Gene

KWMTBOMO12913

Pre Gene Modal

BGIBMGA000221

Annotation

(6-4)_photolyase_[Operophtera_brumata]

Location

Bomo_Chr22(+):4062092-4063767      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 2.168

CDS

ATGTCCAAAACCCCAACGGTTATTCATTGGTTTCGCTTAGATTTACGTATTCATGATAACCTTGCCCTTCGCAATGCTATAAATGAAGCAGAAAACAGAAAACATTTGCTCAGACCAATTTATTTTTTAGATCCAAACATTAAAGATAAAGTAGGCATAAATAGATTGCGGTTTTTGTTACAAAGCTTAGAAGATTTAGATAACAATTTAAAGAAATTAAACACTTGTCTGTATGTTTTGAGAGGAAAAGCTGTGGATCTATTGCCTAAGTTATTTGATGACTGGCAAGTAAAATATTTAACATGTCAAGTGGATATAGATCCTGAGTTTGTACAGCAGGATGAATACATTGAAGACATTGCTGAGAAGAAAGGTGTATTCATTAACAAGAGAGTACAGCATACAGTTTATGATGTACATAAAGTTTTGAGAGAGAACAATGGAGCTGTACCACTCACGTATCAAAAGTTTCTTTCATTAGTAAAGAGCATTAATGTAAAGGAACCAATAGAAATATCTAATGTCTTATCAAGCCACTGCAAGCCAATTGATATACAATCCGAAAACTATAGTATACCCAATTTGAAGGAATTACAAATTGATGAAGAAACATTAGCACCTGTGAAATATCATGGTGGTGAAACAGAAGCTCTTAAACGTTTGAATTTATACATGTCTAAAAAAGAATGGGTTTGTAAATTTGAAAAACCAAATTCATCTCCAAATAGTATTGAACCAAGCACAACAGTACTCAGTCCATATATTAGTCATGGTTGCTTATCAGCAAAACTATTTTATTATAAACTCAAAGAGGTGGAAAATGGTAGACAACACACCTTGCCACCAGTATCTCTGATGGGACAATTAATGTGGCGAGAATTTTATTATACAGCAGGAACTGGTGTAGCCAATTTTGACAAAATGGTTGGTAATGCTATTTGCATTCAAATACCTTGGACAAAAAATGACGCCTTCTTAAAAGCCTGGGCAGAAGGTAAAACTGGTTACCCATTTGTTGATGCAATCATGAGGCAACTGAAACAAGAAGGTTGGATCCATCATTTAGCTAGACACATGGTGGCTTGCTTCTTAACCCGAGGTGATCTCTGGATATCATGGGAAGAAGGAGCTAAAATATTTGAAGATTATCTACTTGATTATGACTGGTCATTGAATGCTGGTAATTGGATGTGGTTGTCAGCTTCTGCATTCTTTTACAAATATTTCAGAGTTTATAGTCCAGTGGCATTTGGTCAGAAAACTGATAAAGAGGGAGTTTACATTAAGAAGTATGTACCTGAATTAAAGAAGTATCCACGAGAATGA

Protein

MSKTPTVIHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIKDKVGINRLRFLLQSLEDLDNNLKKLNTCLYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYIEDIAEKKGVFINKRVQHTVYDVHKVLRENNGAVPLTYQKFLSLVKSINVKEPIEISNVLSSHCKPIDIQSENYSIPNLKELQIDEETLAPVKYHGGETEALKRLNLYMSKKEWVCKFEKPNSSPNSIEPSTTVLSPYISHGCLSAKLFYYKLKEVENGRQHTLPPVSLMGQLMWREFYYTAGTGVANFDKMVGNAICIQIPWTKNDAFLKAWAEGKTGYPFVDAIMRQLKQEGWIHHLARHMVACFLTRGDLWISWEEGAKIFEDYLLDYDWSLNAGNWMWLSASAFFYKYFRVYSPVAFGQKTDKEGVYIKKYVPELKKYPRE

Uniprot

H9ISJ4   A0A0L7L2N2   A0A2H1W0A6   A0A0N1IBN5   A4GKG4   A0A194Q866   + More
S4P9S3   A0A212FCT0   Q17M01   A0A182G8D4   A0A1B6HRI7   A0A182X5V0   Q7Q8F7   A0A182IBI3   A0A1J1ISJ3   A0A182VBA2   A0A1Q3F0B2   A0A182P1L9   A0A182NGQ8   A0A182F370   A0A2M4ATL2   A0A1Q3F145   A0A2M4AU29   A0A182Q6J1   A0A1B6LDP8   A0A1Q3F0U4   A0A182K1C5   A0A182MFJ8   J9JTZ3   A0A182WFE6   W5J4Q5   A0A336M3J7   A0A182RK33   A0A084VSM5   A0A0L0CFN6   A0A1W4WDB6   A0A1B6C1X2   A0A1I8NXW5   A0A1B6DMQ6   A0A1B6CPB0   A0A182KN39   K1R2B2   A0A1Q1NMK0   B0XE23   B4KIZ1   A0A0P5BWR0   E9G560   A0A1I8N4Q5   A0A0P4XR46   Q29LV7   A0A0P6JBL8   A0A3B4DKP2   A0A3B0JVD6   A0A3B1IHH9   Q8SXK5   Q0E8P0   A0A1A9VI18   W5KG40   A0A1W4UW94   B3MJT4   A0A0A1XG18   B4JAI4   Q24281   B4P425   B4LVA2   B4Q3F5   B4IFD8   A0A3B3C2U5   A0A1A9YH73   A0A182TEM2   A0A034W8G7   A0A1S3HGK8   B3NM00   A7RWD1   A0A1S3HDP4   A0A0K8W6G0   A0A1S3KC50   A0A3P9JXI3   A0A0K8UN60   W8BJA9   A0A1B0FGM4   A0A1S3LSH2   A0A1S3LSL5   A0A3P9LM43   C0H946   H2MAP7   V4BE98   A0A1B0C3Y9   A0A1S3KCP2   A0A3Q8GXL8   I3J2U8   A0A3P9IKW7   A0A3P9IKX1   G3PVR8   A0A2C9JDL3   A0A2S2R0G9   A0A060VQF5   A0A2I4CT47   A0A1A9WM15   A0A2C9JDL6  

Pubmed

19121390    26227816    26354079    17244599    23622113    22118469    + More
17510324    26483478    12364791    14747013    17210077    20920257    23761445    24438588    26108605    20966253    22992520    28072861    17994087    21292972    25315136    15632085    23185243    25329095    18956392    19722240    19570997    20166732    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    25830018    8600518    17550304    22936249    29451363    25348373    17615350    17554307    24495485    20433749    23254933    25186727    15562597    24755649   

EMBL

BABH01013549    JTDY01003316    KOB69753.1    ODYU01005561    SOQ46529.1    KQ460041    + More
KPJ18367.1    EF117813    ABO38436.1    KQ459324    KPJ01584.1    GAIX01003614    JAA88946.1    AGBW02009152    OWR51555.1    CH477209    EAT47743.1    JXUM01151927    KQ571331    KXJ68201.1    GECU01030412    JAS77294.1    AAAB01008944    EAA10141.3    APCN01000703    CVRI01000058    CRL02690.1    GFDL01014053    JAV20992.1    GGFK01010824    MBW44145.1    GFDL01013768    JAV21277.1    GGFK01010901    MBW44222.1    AXCN02002079    GEBQ01024628    GEBQ01018159    JAT15349.1    JAT21818.1    GFDL01013874    JAV21171.1    AXCM01005884    ABLF02035823    ADMH02002210    ETN57794.1    UFQT01000502    SSX24815.1    ATLV01016091    KE525057    KFB40969.1    JRES01000539    KNC30304.1    GEDC01029782    JAS07516.1    GEDC01010350    JAS26948.1    GEDC01022009    JAS15289.1    JH818748    EKC39908.1    KX371078    AQM57606.1    DS232798    EDS45795.1    CH933807    EDW13504.1    GDIP01182980    LRGB01000568    JAJ40422.1    KZS17925.1    GL732532    EFX85418.1    GDIP01239335    JAI84066.1    CH379060    EAL33938.1    KRT04340.1    GDIQ01009718    JAN85019.1    OUUW01000004    SPP79450.1    AY089584    AAL90322.1    AE014134    BT044074    AAF53904.1    AAN11080.1    ACH92139.1    AGB93167.1    AGB93168.1    CH902620    EDV31423.1    GBXI01004375    JAD09917.1    CH916368    EDW02770.1    D83701    BAA12067.1    CM000158    EDW90535.1    CH940649    EDW64362.1    CM000361    CM002910    EDX05636.1    KMY91178.1    CH480833    EDW46360.1    GAKP01007953    JAC50999.1    CH954179    EDV54536.1    DS469546    EDO44240.1    GDHF01005675    JAI46639.1    GDHF01024192    JAI28122.1    GAMC01016871    JAB89684.1    CCAG010020599    BT058852    ACN10565.1    KB199882    ESP04097.1    JXJN01025192    MG659714    AXM05369.1    AERX01000034    GGMS01014295    MBY83498.1    FR904279    CDQ57056.1   

Proteomes

UP000005204    UP000037510    UP000053240    UP000053268    UP000007151    UP000008820    + More
UP000069940    UP000249989    UP000076407    UP000007062    UP000075840    UP000183832    UP000075903    UP000075885    UP000075884    UP000069272    UP000075886    UP000075881    UP000075883    UP000007819    UP000075920    UP000000673    UP000075900    UP000030765    UP000037069    UP000192223    UP000095300    UP000075882    UP000005408    UP000002320    UP000009192    UP000076858    UP000000305    UP000095301    UP000001819    UP000261440    UP000268350    UP000018467    UP000000803    UP000078200    UP000192221    UP000007801    UP000001070    UP000002282    UP000008792    UP000000304    UP000001292    UP000261560    UP000092443    UP000075902    UP000085678    UP000008711    UP000001593    UP000265180    UP000092444    UP000087266    UP000001038    UP000030746    UP000092460    UP000005207    UP000265200    UP000007635    UP000076420    UP000193380    UP000192220    UP000091820   

PRIDE

H9ISJ4    Q8SXK5    Q0E8P0    Q24281   

Pfam

PF00875   DNA_photolyase        + More
PF03441   FAD_binding_7

Interpro

IPR006050   DNA_photolyase_N        + More
IPR005101   Cryptochr/Photolyase_FAD-bd       
IPR036134   Crypto/Photolyase_FAD-like_sf       
IPR014729   Rossmann-like_a/b/a_fold       
IPR036155   Crypto/Photolyase_N_sf       
IPR002081   Cryptochrome/DNA_photolyase_1       

SUPFAM

SSF48173   SSF48173        + More
SSF52425   SSF52425       

Gene 3D

3.40.50.620    

ProteinModelPortal

H9ISJ4   A0A0L7L2N2   A0A2H1W0A6   A0A0N1IBN5   A4GKG4   A0A194Q866   + More
S4P9S3   A0A212FCT0   Q17M01   A0A182G8D4   A0A1B6HRI7   A0A182X5V0   Q7Q8F7   A0A182IBI3   A0A1J1ISJ3   A0A182VBA2   A0A1Q3F0B2   A0A182P1L9   A0A182NGQ8   A0A182F370   A0A2M4ATL2   A0A1Q3F145   A0A2M4AU29   A0A182Q6J1   A0A1B6LDP8   A0A1Q3F0U4   A0A182K1C5   A0A182MFJ8   J9JTZ3   A0A182WFE6   W5J4Q5   A0A336M3J7   A0A182RK33   A0A084VSM5   A0A0L0CFN6   A0A1W4WDB6   A0A1B6C1X2   A0A1I8NXW5   A0A1B6DMQ6   A0A1B6CPB0   A0A182KN39   K1R2B2   A0A1Q1NMK0   B0XE23   B4KIZ1   A0A0P5BWR0   E9G560   A0A1I8N4Q5   A0A0P4XR46   Q29LV7   A0A0P6JBL8   A0A3B4DKP2   A0A3B0JVD6   A0A3B1IHH9   Q8SXK5   Q0E8P0   A0A1A9VI18   W5KG40   A0A1W4UW94   B3MJT4   A0A0A1XG18   B4JAI4   Q24281   B4P425   B4LVA2   B4Q3F5   B4IFD8   A0A3B3C2U5   A0A1A9YH73   A0A182TEM2   A0A034W8G7   A0A1S3HGK8   B3NM00   A7RWD1   A0A1S3HDP4   A0A0K8W6G0   A0A1S3KC50   A0A3P9JXI3   A0A0K8UN60   W8BJA9   A0A1B0FGM4   A0A1S3LSH2   A0A1S3LSL5   A0A3P9LM43   C0H946   H2MAP7   V4BE98   A0A1B0C3Y9   A0A1S3KCP2   A0A3Q8GXL8   I3J2U8   A0A3P9IKW7   A0A3P9IKX1   G3PVR8   A0A2C9JDL3   A0A2S2R0G9   A0A060VQF5   A0A2I4CT47   A0A1A9WM15   A0A2C9JDL6  

PDB

3CVY     E-value=2.19278e-139,     Score=1270

KEGG

101735529    K02295 cryptochrome | (RefSeq) cryptochrome-1

GO

GO:0016829   GO:0003914   GO:0006281   GO:0009416   GO:0000166   GO:0003904  

Length:

441

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.22285

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00918

outside

1  -  441

 

 

Pi

231.291039

Theta

204.001642

Tajima's D

0.276947

CLR

0

CSRT

0.448277586120694

Interpretation

Uncertain