Gene

KWMTBOMO12910

Annotation

endonuclease_and_reverse_transcriptase-like_protein_[Bombyx_mori]

Location

Bomo_Chr22(-):3989687-3991021      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 2.001

CDS

ATGGTCTGGCATAGGGCACTTCTATCGAAGCTTCCAGCATACGGGATCCCTGAGGGACTCTGCAAGTGGATCGCTAGCTTTTTGGATGGACGGAGCATTGCAGTTGTCGTCGACGGCTGCTGCTCCGATACCATGACCATCAACGCTGGTGTTCCACAAGGTGCGGTGCTCTCCCCCACGCTTTTCATACTGCATATCAATGACATGCTATCTATTGATGGCATGCATGGCTATGCGGATGACAGCACGGGGGATGCGCGATATATCGGCCATCAGAGTCTCTCTCGAAGCGTTGTACACGAGAGGCGATTAAAACTTGTGTCTGAAGTGGAGAACTCTCTGGGGCGGGTCTCCAAGTGGGGTGAACTGAATTCAGTTCAGTTCAACCCATTGAAGACACAGGTTTGCGCGTTCACTGCGAAGAAGGACCCTTTTGCCATGGCGCCGGAATTTCAAGGAGTATCCCTGCAGCTTTCCGCGAGTATCGGGATTCTGGGGGTCGATATTTCGAGCGATGTCCAGTTTCGGAGTCATTTGGAAGGTAAAGCCAAATTGGCCTCTAAAATGTTGGGAGTTCTCAACAGAGCGAAGCGGTATTTCACGCCTAGACAGAGACTTGCGCTTTATAAAGCGCAGGTCCGACCTCGCGTGGAGTACTGCTCTCACCTCTGGGCCGGGGCTCCCAAATACCAGCTACTTCCATTTGACTCCATACAGAAACGGGCTGTTCGGATGGTCGATAGTCCTGCTCTCGCGGATCGCTTGGAACCTCTGGGTCTACGGAGGGACTTCGGTTCTCTCTGTGTTTTATACCGCATGGTCCATGGGGAATGCTCTGAGGAATTATTCGAGATGATTCCCTCATCTCCTTTTTATCATCGCACCTCCCGCCATCGGAGCAGAGTTCATCCATATTATCTGAAACCGCTGCGTTTATCGACAGTGCGTTTCCAAAGATCTTTTTTGCCACGTACCATCCGGCTTTGGAATGAGCTCCCCTCCACGGTGTTTTCCGAGCGCTATGACATGTCCTTCTTCAAACGAGGCTTGCGGAGAGTTCTTTATGGTAGGCAGCGGCTTGGCTCTGCCCCTGGCATTGCTGACGTCCATGAGCGACGGTGA

Protein

MVWHRALLSKLPAYGIPEGLCKWIASFLDGRSIAVVVDGCCSDTMTINAGVPQGAVLSPTLFILHINDMLSIDGMHGYADDSTGDARYIGHQSLSRSVVHERRLKLVSEVENSLGRVSKWGELNSVQFNPLKTQVCAFTAKKDPFAMAPEFQGVSLQLSASIGILGVDISSDVQFRSHLEGKAKLASKMLGVLNRAKRYFTPRQRLALYKAQVRPRVEYCSHLWAGAPKYQLLPFDSIQKRAVRMVDSPALADRLEPLGLRRDFGSLCVLYRMVHGECSEELFEMIPSSPFYHRTSRHRSRVHPYYLKPLRLSTVRFQRSFLPRTIRLWNELPSTVFSERYDMSFFKRGLRRVLYGRQRLGSAPGIADVHERR

Uniprot

Q6UV17   A0A3S2LP03   A0A3S2LQP1   A0A3S2NMS5   A0A3S2NTH0   A0A3S2NHP4   + More
A0A3S2NMX8   A0A2H1VFZ3   A0A0P4VXU0   A0A3D5S1K1   A0A131XT39   A0A2H9T3F5   A0A131XQR9   A0A1G4M3N1   A0A147BJZ1   A0A0P4VTV9   T2M4I6   W4ZIH4   A0A1G4M5I2   A0A2H9T4Y5   A0A2H9T4F1   W4YEI4   A0A2H9T2R7   A0A0K8RPQ6   E3NNZ5   A0A2H9T5P0   W4Y3F1   A0A1E1XGQ7   A0A147BNQ9   A0A1E1X2P4   W4ZGQ7   A0A147BMA3   K7EZ61   A0A2H9T2Z5   A0A2H9T4Q5   K7F012   A0A2H9T361   A0A3M0KCP4   A0A131Y4I8   A0A1E1XNL1   K7EYW0   K7EWE8   K7EWB0   A0A147BKL3   A0A2H9T2V7   A0A0P4VVV8   A0A147BKM4   A0A210QEX7   A0A3M0J7Q7   K7EYM6   K7EZY9   K7F0H6   A0A210QQ08   A0A2H9T2H3   A0A1E1XNW6   K7EY42   K7F1N2   W4XHK9   A0A3M0JFD2   A0A2H9T441   K7EY14   K7EX25   K7F115   A0A1E1XPS6   A0A2G8KET5   K7EW64   K7EWU0   K7EWJ2   A0A131XV56   K7EYU0   A0A2I0UC10   K7EW73   K7EWF2   K7EWV3   K7EX34   A0A2B4RZI8   K7F1S9   K7F046   A0A1E1WW75   K7EYN3  

Pubmed

30148503    29150518    29652888    24065732    28503490    17381049    + More
29209593    28812685    29023486   

EMBL

AY359886    AAQ57129.1    RSAL01002067    RVE40593.1    RSAL01000422    RVE41792.1    + More
RSAL01000002    RVE54942.1    RSAL01000090    RVE48098.1    RSAL01003136    RVE40332.1    RVE55041.1    RVE55094.1    ODYU01002162    SOQ39302.1    GDRN01105059    JAI57791.1    DPOC01000269    HCX22453.1    GEFM01006421    JAP69375.1    NSIT01000412    PJE77717.1    GEFM01006417    JAP69379.1    FLMD02000154    SCV66010.1    GEGO01004295    JAR91109.1    GDRN01111334    JAI56796.1    HAAD01000593    CDG66825.1    AAGJ04095885    FLMD02000280    SCV66640.1    NSIT01000218    PJE78268.1    NSIT01000271    PJE78081.1    AAGJ04103823    NSIT01000538    PJE77518.1    GADI01001229    JAA72579.1    DS269285    EFP11931.1    NSIT01000164    PJE78524.1    AAGJ04090645    GFAC01000919    JAT98269.1    GEGO01003312    JAR92092.1    GFAC01005653    JAT93535.1    AAGJ04096877    GEGO01003518    JAR91886.1    AGCU01081420    NSIT01000477    PJE77602.1    NSIT01000239    PJE78188.1    AGCU01135984    NSIT01000462    PJE77627.1    QRBI01000116    RMC08860.1    GEFM01002394    JAP73402.1    GFAA01002514    JAU00921.1    AGCU01046616    AGCU01003726    AGCU01168427    GEGO01004422    JAR90982.1    NSIT01000532    PJE77527.1    GDRN01111277    JAI56804.1    GEGO01004061    JAR91343.1    NEDP02004020    OWF47171.1    QRBI01000171    RMB96954.1    AGCU01156312    AGCU01064953    AGCU01096477    NEDP02002425    OWF50811.1    NSIT01000637    PJE77413.1    GFAA01002479    JAU00956.1    AGCU01190758    AGCU01115937    AAGJ04014892    QRBI01000146    RMB99817.1    NSIT01000300    PJE77993.1    AGCU01156992    AGCU01018596    AGCU01164164    GFAA01002385    JAU01050.1    MRZV01000639    PIK46517.1    AGCU01055496    AGCU01076500    AGCU01061849    GEFM01006250    JAP69546.1    AGCU01001404    KZ505886    PKU43598.1    AGCU01130115    AGCU01106812    AGCU01002265    AGCU01155839    LSMT01000248    PFX22193.1    AGCU01038874    AGCU01124718    AGCU01148950    GFAC01007905    JAT91283.1    AGCU01124120   

Proteomes

UP000283053    UP000007110    UP000008281    UP000007267    UP000269221    UP000242188    + More
UP000230750    UP000225706   

PRIDE

Q6UV17   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF01585   G-patch
PF04939   RRS1
PF02460   Patched
PF03372   Exo_endo_phos

Interpro

IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR012677   Nucleotide-bd_a/b_plait_sf       
IPR000504   RRM_dom       
IPR034653   SPF45_RRM       
IPR003954   RRM_dom_euk       
IPR000467   G_patch_dom       
IPR040052   RBM17       
IPR035979   RBD_domain_sf       
IPR007023   Ribosom_reg       
IPR030223   Dispatched       
IPR003392   Ptc/Disp       
IPR000731   SSD       
IPR019786   Zinc_finger_PHD-type_CS       
IPR011011   Znf_FYVE_PHD       
IPR019787   Znf_PHD-finger       
IPR013083   Znf_RING/FYVE/PHD       

SUPFAM

SSF56219   SSF56219        + More
SSF54928   SSF54928       
SSF57903   SSF57903       

Gene 3D

3.60.10.10     3.30.70.330     3.30.40.10    

CDD

cd12647  RRM_UHM_SPF45

ProteinModelPortal

Q6UV17   A0A3S2LP03   A0A3S2LQP1   A0A3S2NMS5   A0A3S2NTH0   A0A3S2NHP4   + More
A0A3S2NMX8   A0A2H1VFZ3   A0A0P4VXU0   A0A3D5S1K1   A0A131XT39   A0A2H9T3F5   A0A131XQR9   A0A1G4M3N1   A0A147BJZ1   A0A0P4VTV9   T2M4I6   W4ZIH4   A0A1G4M5I2   A0A2H9T4Y5   A0A2H9T4F1   W4YEI4   A0A2H9T2R7   A0A0K8RPQ6   E3NNZ5   A0A2H9T5P0   W4Y3F1   A0A1E1XGQ7   A0A147BNQ9   A0A1E1X2P4   W4ZGQ7   A0A147BMA3   K7EZ61   A0A2H9T2Z5   A0A2H9T4Q5   K7F012   A0A2H9T361   A0A3M0KCP4   A0A131Y4I8   A0A1E1XNL1   K7EYW0   K7EWE8   K7EWB0   A0A147BKL3   A0A2H9T2V7   A0A0P4VVV8   A0A147BKM4   A0A210QEX7   A0A3M0J7Q7   K7EYM6   K7EZY9   K7F0H6   A0A210QQ08   A0A2H9T2H3   A0A1E1XNW6   K7EY42   K7F1N2   W4XHK9   A0A3M0JFD2   A0A2H9T441   K7EY14   K7EX25   K7F115   A0A1E1XPS6   A0A2G8KET5   K7EW64   K7EWU0   K7EWJ2   A0A131XV56   K7EYU0   A0A2I0UC10   K7EW73   K7EWF2   K7EWV3   K7EX34   A0A2B4RZI8   K7F1S9   K7F046   A0A1E1WW75   K7EYN3  

KEGG

105842661    no KO assigned | (RefSeq) uncharacterized LOC105842661

GO

GO:0003964   GO:0004519   GO:0003723   GO:0016021   GO:0046872  

PANTHER

PTHR13288   PTHR17602   PTHR45951:SF3  

Length:

373

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.117

Exp number, first 60 AAs:

0.07847

Total prob of N-in:

0.01779

outside

1  -  373

 

 

Pi

43.630398

Theta

43.637629

Tajima's D

-1.032316

CLR

0.054193

CSRT

0.133943302834858

Interpretation

Uncertain