SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO12907  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA000473
Annotation
PREDICTED:_5'-3'_exoribonuclease_1_isoform_X1_[Bombyx_mori]
Full name
5'-3' exoribonuclease 1      
Location in the cell
Nuclear   Reliability : 2.938
 

Sequence

CDS
ATGGGTGTCCCAAAATTTTTCCGTTATACCAGTGAAAGGTATCCTTGTCTCAATGAGCTGGTAAAACAGTATCAGATTCCAGATTTTGATAACATGTATTTAGACATGAATGGAATCATTCACAATTGCTCGCATCCTGATGACTCCAACCCACATTTTCGTATCACTGAAGAGAAGATATTCACTGATGTCTTCCATTATATTAGTATTTTATTTCAAATTGTCAAGCCAAAAAAATTATTTTTCATGGCTATTGATGGAGTTGCACCTAGAGCGAAGATGAACCAGCAGAGAGGCAGAAGGTTCCGGTCTGCTAGAGAGGCAGAAAATTTAGAAGCAGAGGCTAAAGCAAAAGGGGAAGTTCTGCCTACAGAGAAGAGATTCGACAGTAATTGCATCACCCCAGGAACTGTCTTCATGGCACGCCTACATGAACAACTCAAATATTTCGTAAAGCATAAAATGTCCACAGATCCACTCTGGTCCAAAGTTAAGGTCATACTCTCGGGACATGAGACCCCTGGCGAAGGGGAGCATAAAATAATGGACTATATTAGATGGGCACGCTCGCAGCCCGATTATGATCCTAATACAAGACATTGCCTGTATGGTCTTGATGCAGATCTCATAATGCTGGGAATGTGCACGCATGAACCACATTTTGCACTTTTGAGAGAAGAGGTTAAATTTGGTCGAACAACCCAAAGGGCGACAACCCCAGAAGAGACGAACTTCTATTTACTACATTTATCTCTGTTGAGAGAATATTTGGAACAAGAGTTTATCGCGATAAAGGACAAGTTGCCGTTCCCTTATGATATAGAGAAGATTGTTGATGACTGGGTGCTCATGGGATTCTTAGTGGGAAATGATTTTATACCTAATTTACCGAACATGCACGTCAATAACGATGCACTCCCACTATTGTATAATACTTACATGACCGTGCTGCCTAAGTTGGATGGCTATATAAACGAAGCTGGTGATCTGAACTTGGAAAGATTCGAGATATTTATGCAAGAACTTTCTAAGATAGACAAAGAAAAATTTCAGGACACCTACACCGACTTAAAGTACTTCGAAGAGAAAACGGGACGACGACCTAACGCTAATGAAAGGAGAGAGTACAAAGCTAATAACAATGAAACGTTCAACGTAGATGTAAATGAAATAAAAGGAAACCATTTGGACAATGATCTGCAAGCACTCATAAATGCTACAGACAATATGTTTATGAATGATTTGGAAGATGGTGAAGAAGAATACGAGGAAACGAGCGATGAGGAAGCCAACATGGAAATGGAGTTTATTTTGCATAAAAAAGATTATTATATGAATAAGTTGGACTATTCGAAAGTTACAGACGAAGTGCTGGCGGACCAGGCCGAGGGCTACGTGCGAGCCATCCAGTGGAACCTGTACTACTACTACAAGGGCTGCCCCTCGTGGTGCTGGTTCTATCCGCACCACTACGCCCCCTACATATCCGACATTAAGGGATTCAAAGATCTGAAGATCGACTTCGAGCTCGGGGAACCGTTCAAGCCCTTCGAACAGCTGCTAGCAGTGTTGCCGGCCGCCAGTAAGCATCTACTGCCGACCCCGTTTCACGATTTAATGACTGATGAAGATTCGCCGATAGTACATTACTATCCCGTGCATTTCGATACCGACCTCAACGGGAAAATCAACGATTGGGAGGCAGTCGTACTCATACCGTTCATAGATGAGACTAATTTACTGTCAGCGATGGCTCCGTGCTACCAGCGGCTGACGGACGAAGAAATTAAAAGGAACCAGCCCGGACCGATGCTGGTCTACAGCTGGAGCTCTACTAGTCTAGGTGTCGTCGATGCTCCTCAGTACTTCCCTTCGATCAAGGAGTGTCATGCGTTCGAGAAACGAGTGTGGAGGAATGAACTGGACGTGCCCGAGGAGCAGCTGAAGAAGGGAATGTTGCCCAACGCACGTCGAGACATGCTGTTCCCGGGCTTCCCCACCATGAGACATCTCAAATATAAGTCGAGTCATAAAATGGCAAAAGTGAAAGTTTTCGACCTGCCAGCTCGAAATAGTAGCGTAATTATTGAACTGATCCGAGATAAAGATGAGGATTCCCTGGAGAGGGTGGCGAACGAACTGCTCGGTAAAGTTATATGGGTTGGGTGGCCGCACCTCACGAGAGCTAAAGTTATCTCGGTGTCAAATGAGAAGACGCGCCTGCATTATGTCGACAAGCAGAACAATAATGTGAACGGTACGTCGCTATACACCACGGTGCAGAACAGCGGTAACTTACACAAACAATGGCTCGGAGAGAGGAACACTATTATTGAGCATAACATGAACAGACTCGGCATAGAGTTGGGCGATGTCAATATTATAGTGCACGCTGTTAATTTGAAAGGTTACAAGTATATCGTCCAAGACAACTGCCAGATGGTGTACGAGCCGGAATGGTGCGAGGTGCCGTGCGGGTACGCCTACCAGGCCGTGGTGAGGGATGTCAGCGCGCACGTGGTGCAGGAGGTCAACAGGTTCAGCACGCTGCAGGAGGCCTACCCTCCCGGGGACACGGTCTTCCTGTTAACGCCCGGACAGTACTACGGGTGTCTGGCTACCGTGGTCGAATCGGCGCAGGTCCGCAGCGGGCGCATCAAGGTGTCGGTGTGCGAGAGCGTGGAGCCCACGCCCGTCGCCGCGCCCGCGCCCCCCTACAAGAGCAGCCAGCACGCCGCGGCCGCGTGCGGTGTCACTAATCAGATGCTGTCGTGCATCACGGGCTGCGTGTTCGTCGTGGAAGGGACCCGCGACGGACGGTCAACAGACAAACTCAAGAAAATTAATATCGGCCTCAATTTAAAGTTTAATAAAAAGAATCAGGAAGTGGCCGGGTATACGCGGCGCTGCGCGGTGACGGGCGCGTGGCAGTACTCGGACCGCTGCGTGCAGCTCGTCAAAGATTACGCCCAGAATTTCCCGGAACTGTTCGACAAACTCGCGTCGTCGTCGATAAGAGACGTTTTCTTTGAGAGCGATCTGTGGCCCGGAGAAGTTGGAGAGAAGAAATACCAGGACGTATTACAGTGGATCAAAAACCAGCCTTTCCGTCGCGCGCTTCGAAGGGATTGTGGTTCCGAGGCCTTAGAACCTGAAGAGATGAAGGCCCTGGCTGATAACATCGACAAGCAGCTGGAGATACTCAATGCCAATGAGAGGAAAATCACGATGCAGGTCAAGTGGAATCTGCTTTATAAGGCGGAGTTGCACGCGGGCGAGGTGTCGCCGGACCGCGCGGCGGACTACCGGCTGTACGACCGCGTGGTGTGCGTGGCGCGCGGGCTGTGCGTGCCGGCGGGCGCGCGCGGCACCGTGGCGGCGCTGCTGCCCCCGCCCCCCGCCACCTCCGTGCGCCTGTCCGACCGCCTCAACGCCGCGCACACCTACCTCGTGATCTTCGATCGGCCCTTCGCGGGCGCCCTGCACGACGACTGCTTCGAGGAGAACAGGCTCTACAGAATGCGACCGAATCAGCTACTGAACATATCGTACGGTCGGAAGATACGTCAGGACGTGCGGACGGAGCAAGCCCTGGAGCCCTTCAGCTACTTCCGGCCGGTCAGCCTGCTGCGGAAAGACGACGGACATCACTCCGCTTTTGCGAGCTACAGTCCTCCAGCGGATAAGAGTAATGGTGTTGAGATGAATTCGCCACCGCAGGATAAAGCAACACATCTACTGCGTAACTTGTTGAGGATCAGCGAAGATAACCCGAAGGCTAATAACAATCTCCCGAGTGAATCTAACCAGAGCTGGCGAATCAAGCCGGACGTCACTCCGCCGGCCCTCCCGCAGCCCCCCAGAGTGCAGCCCCACGGGTGGCGCAAGGACGCTTCCAGCGCGAGCGGCGGCCGCCCGGGCCCCGCGCCGCCCAACAACTGGACCAATAACATCGGGCATAACAATTTTAAGAATCCACCGCCGTTCCCACCGGTCCCGACCTTCAACCAGCCTTTCCCTGGCCCCTCTCAAATCCCACTCCAGAGTCCACTGCAGTCCCGCCAGTATTTCAACGTCCAGCAACAGCGGCCCTACCAGCAAAACTTTCCCCAACATTTGCCCAACGTTTCGGCCAACAATTCTACTGCCGCATTGCCAACCCAGCGGTCTCATACGGTACCCGTTGGCCCTATACTACAAAATATGAAATCGGATATAACCAATCAAAAATCTGGGATGCATCCCAACCCGCCGCGGACCAGCGATAAGGTTGTGAATCCATTCGTGCCTCTACAAGTACAAACCAGCCAGAGAAGAGTGAGTCAACCAAGCTCGTCCCAGAGAGATGCTAACGAACTGGTGACGCCGAAGGCTCACGTCGCGACGCAGCAGCAGCGGGCGGGTGCGGCGGCGAACCAACAGAACTCCAGTGCAGACGTGAAGCCTCAAAAGAAGAGGAAACAAAGGATAGCAGCCAACCTCCCATTTCAAGAAGATTAA
Protein
MGVPKFFRYTSERYPCLNELVKQYQIPDFDNMYLDMNGIIHNCSHPDDSNPHFRITEEKIFTDVFHYISILFQIVKPKKLFFMAIDGVAPRAKMNQQRGRRFRSAREAENLEAEAKAKGEVLPTEKRFDSNCITPGTVFMARLHEQLKYFVKHKMSTDPLWSKVKVILSGHETPGEGEHKIMDYIRWARSQPDYDPNTRHCLYGLDADLIMLGMCTHEPHFALLREEVKFGRTTQRATTPEETNFYLLHLSLLREYLEQEFIAIKDKLPFPYDIEKIVDDWVLMGFLVGNDFIPNLPNMHVNNDALPLLYNTYMTVLPKLDGYINEAGDLNLERFEIFMQELSKIDKEKFQDTYTDLKYFEEKTGRRPNANERREYKANNNETFNVDVNEIKGNHLDNDLQALINATDNMFMNDLEDGEEEYEETSDEEANMEMEFILHKKDYYMNKLDYSKVTDEVLADQAEGYVRAIQWNLYYYYKGCPSWCWFYPHHYAPYISDIKGFKDLKIDFELGEPFKPFEQLLAVLPAASKHLLPTPFHDLMTDEDSPIVHYYPVHFDTDLNGKINDWEAVVLIPFIDETNLLSAMAPCYQRLTDEEIKRNQPGPMLVYSWSSTSLGVVDAPQYFPSIKECHAFEKRVWRNELDVPEEQLKKGMLPNARRDMLFPGFPTMRHLKYKSSHKMAKVKVFDLPARNSSVIIELIRDKDEDSLERVANELLGKVIWVGWPHLTRAKVISVSNEKTRLHYVDKQNNNVNGTSLYTTVQNSGNLHKQWLGERNTIIEHNMNRLGIELGDVNIIVHAVNLKGYKYIVQDNCQMVYEPEWCEVPCGYAYQAVVRDVSAHVVQEVNRFSTLQEAYPPGDTVFLLTPGQYYGCLATVVESAQVRSGRIKVSVCESVEPTPVAAPAPPYKSSQHAAAACGVTNQMLSCITGCVFVVEGTRDGRSTDKLKKINIGLNLKFNKKNQEVAGYTRRCAVTGAWQYSDRCVQLVKDYAQNFPELFDKLASSSIRDVFFESDLWPGEVGEKKYQDVLQWIKNQPFRRALRRDCGSEALEPEEMKALADNIDKQLEILNANERKITMQVKWNLLYKAELHAGEVSPDRAADYRLYDRVVCVARGLCVPAGARGTVAALLPPPPATSVRLSDRLNAAHTYLVIFDRPFAGALHDDCFEENRLYRMRPNQLLNISYGRKIRQDVRTEQALEPFSYFRPVSLLRKDDGHHSAFASYSPPADKSNGVEMNSPPQDKATHLLRNLLRISEDNPKANNNLPSESNQSWRIKPDVTPPALPQPPRVQPHGWRKDASSASGGRPGPAPPNNWTNNIGHNNFKNPPPFPPVPTFNQPFPGPSQIPLQSPLQSRQYFNVQQQRPYQQNFPQHLPNVSANNSTAALPTQRSHTVPVGPILQNMKSDITNQKSGMHPNPPRTSDKVVNPFVPLQVQTSQRRVSQPSSSQRDANELVTPKAHVATQQQRAGAAANQQNSSADVKPQKKRKQRIAANLPFQED

Summary

Similarity
Belongs to the 5'-3' exonuclease family.
EC Number
3.1.13.-
EMBL
BABH01013557    BABH01013558    KQ459324    KPJ01589.1    NEVH01010475    PNF32570.1    + More
PNF32572.1    KK852665    KDR18997.1    PNF32571.1    KQ971343    EFA03462.2    NNAY01001122    OXU25055.1    GEDC01029789    JAS07509.1    APGK01046715    KB741067    ENN74402.1    LBMM01001426    KMQ96340.1    GL438838    EFN68180.1    GL887908    EGI69505.1    ADTU01018763    KQ976601    KYM79423.1    KK107148    QOIP01000009    EZA57402.1    RLU18324.1    KQ981693    KYN37692.1    GL452776    EFN76744.1    KQ978881    KYN27760.1    GL762137    EFZ21990.1    KQ434868    KZC09221.1    KQ978406    KYM94136.1    KQ983082    KYQ47718.1    GECZ01031544    JAS38225.1    GECZ01008043    JAS61726.1    GECZ01019220    GECZ01015658    JAS50549.1    JAS54111.1    KZ288266    PBC30137.1    GGLE01003445    MBY07571.1    KQ435760    KOX75605.1    DS231974    EDS29953.1    GEBQ01024451    JAT15526.1    JH817550    EKC38214.1    QCYY01000746    ROT83050.1    AFYH01135231    AFYH01135232    AFYH01135233    AFYH01135234    AFYH01135235    AFYH01135236    AFYH01135237    GFDL01013498    JAV21547.1    GFDL01013457    JAV21588.1    GFXV01001390    MBW13195.1    JH167593    EHB02317.1    GBZA01000724    JAG69044.1    AAPE02010924    AAPE02010925    AAPE02010926    AAPE02010927    AAPE02010928    AAPE02010929    AAPE02010930    AAPE02010931    KN124268    KFO21863.1    KQ773953    OAD52342.1    CH477534    EAT39382.1    AMGL01011317    AMGL01011318    AMGL01011319    AMGL01011320    KL216003    KFV67709.1    GDHC01001167    JAQ17462.1    JXUM01040824    KQ561260    KXJ79181.1    AGTP01051985    AGTP01051986    AGTP01051987    AGTP01051988    JH880452    ELR61446.1    ADFV01028505    ADFV01028506    ADFV01028507    ADFV01028508    ADFV01028509    ADFV01028510    NDHI03003484    PNJ36234.1    GAMT01001670    GAMS01006909    GAMS01006908    GAMS01006907    GAMS01006906    GAMS01006905    GAMR01004462    GAMQ01000612    GAMP01005509    JAB10191.1    JAB16229.1    JAB29470.1    JAB41239.1    JAB47246.1    AAGW02015210    AAGW02015211    AAGW02015212    AAGW02015213   
Pfam
PF17846   XRN_M        + More
PF03159   XRN_N
PF18129   SH3_12
PF18332   XRN1_D1
PF18334   XRN1_D2_D3
Interpro
IPR027073   5_3_exoribonuclease        + More
IPR016494   5_3_exoribonuclease_1       
IPR040992   XRN1_D1       
IPR041385   SH3_12       
IPR041412   Xrn1_helical       
IPR004859   Put_53exo       
IPR041106   XRN1_D2_D3       
IPR014720   dsRBD_dom       
PDB
2Y35     E-value=0,     Score=2205

Ontologies

Topology

Subcellular location
Cytoplasm  
Length:
1499
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.02668
Exp number, first 60 AAs:
0.00063
Total prob of N-in:
0.00129
outside
1  -  1499
 
 

Population Genetic Test Statistics

Pi
219.054229
Theta
162.406523
Tajima's D
1.158963
CLR
0.8931
CSRT
0.707864606769662
Interpretation
Uncertain
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