Gene

KWMTBOMO12906

Pre Gene Modal

BGIBMGA000218

Annotation

DNA_polymerase_epsilon_subunit_4_[Operophtera_brumata]

Location

Bomo_Chr22(+):3919682-3920839      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 2.076 Nuclear   Reliability : 2.221

CDS

ATGTCTGAAGAAGAATGCCACGAAGATGTCGACATTTCAGATATTACAGAGCATTCGGAATCATATCTAGAAAATGAACATCTAAAATTTGCACTGACGGAGGCTACAGAAGCAGATAATAACAAACTAGAATTTGAACTAAACTCTGAGGAACAAGTACATGAGAAGAAACAGAAAACTGAAGTTATAAGATCTACAAAGCTTCCTATAGCGAGAATTAAAAACATTATGAAAATGGACCCAGATGTAAATATTGTATCTAGCGATGCTGTATTTTTGGTTACTAAAGCGACAGAAATGTTTCTAGAAACAATAGTGAAAGAAACTTATGCATTTACATCATCAAATAAACGGAAGGTTATATCAAAGAAAGATTTGGAACTTGTAATAGATAAAGTTGATTGTTTGTGCTTTTTAGAAGGTGCTATGGACTTCTAG

Protein

MSEEECHEDVDISDITEHSESYLENEHLKFALTEATEADNNKLEFELNSEEQVHEKKQKTEVIRSTKLPIARIKNIMKMDPDVNIVSSDAVFLVTKATEMFLETIVKETYAFTSSNKRKVISKKDLELVIDKVDCLCFLEGAMDF

Uniprot

H9ISJ1   A0A2H1W013   A0A2A4JDI0   S4PL56   A0A0L7LA15   A0A3S2TCR5   + More
A0A212F6J0   A0A0N1IPU1   A0A194Q9C8   A0A2R7W3A9   A0A1B0FFG5   A0A1B6C1F2   A0A1S3KDS9   B0WVH5   B4QH54   A0A088A8X7   A0A2A3E4Y3   A0A3B3R034   A0A3Q2DB81   Q28I81   B1WB35   A0A3B0JND2   H2RP88   A0A131Z497   A0A3Q2SU43   A0A3Q4I478  

Pubmed

19121390    23622113    26227816    22118469    26354079    17994087    + More
22936249    29240929    20431018    21551351    26830274    25186727   

EMBL

BABH01013559    ODYU01005517    SOQ46440.1    NWSH01001872    PCG69836.1    GAIX01004220    + More
JAA88340.1    JTDY01002057    KOB72220.1    RSAL01000354    RVE42245.1    AGBW02010006    OWR49356.1    KQ460041    KPJ18360.1    KQ459324    KPJ01590.1    KK854285    PTY14204.1    CCAG010007007    GEDC01030218    JAS07080.1    DS232126    EDS35581.1    CM000362    CM002911    EDX08200.1    KMY95786.1    KZ288379    PBC26554.1    BC170722    CR760539    AAI70722.1    CAJ81258.1    AAMC01112145    AAMC01112146    BC161599    AAI61599.1    OUUW01000001    SPP75069.1    GEDV01002353    JAP86204.1   

Proteomes

UP000005204    UP000218220    UP000037510    UP000283053    UP000007151    UP000053240    + More
UP000053268    UP000092444    UP000085678    UP000002320    UP000000304    UP000005203    UP000242457    UP000261540    UP000265020    UP000008143    UP000268350    UP000005226    UP000265000    UP000261580   

PRIDE

H9ISJ1   

Pfam

PF00808   CBFD_NFYB_HMF

Interpro

IPR003958   CBFA_NFYB_domain        + More
IPR009072   Histone-fold       

SUPFAM

SSF47113   SSF47113       

Gene 3D

1.10.20.10    

ProteinModelPortal

H9ISJ1   A0A2H1W013   A0A2A4JDI0   S4PL56   A0A0L7LA15   A0A3S2TCR5   + More
A0A212F6J0   A0A0N1IPU1   A0A194Q9C8   A0A2R7W3A9   A0A1B0FFG5   A0A1B6C1F2   A0A1S3KDS9   B0WVH5   B4QH54   A0A088A8X7   A0A2A3E4Y3   A0A3B3R034   A0A3Q2DB81   Q28I81   B1WB35   A0A3B0JND2   H2RP88   A0A131Z497   A0A3Q2SU43   A0A3Q4I478  

PDB

1N1J     E-value=9.80993e-09,     Score=137

KEGG

101736457    K03506 DNA polymerase epsilon subunit 4 [EC:2.7.7.7] | (RefSeq) DNA polymerase epsilon subunit 4

PATHWAY

03030    DNA replication - Bombyx mori (domestic silkworm)
03410    Base excision repair - Bombyx mori (domestic silkworm)
03420    Nucleotide excision repair - Bombyx mori (domestic silkworm)

GO

GO:0005634   GO:0046982   GO:0008622   GO:0007264   GO:0006457   GO:0051082   GO:0005515   GO:0045181   GO:0050660   GO:0008152   GO:0016491   GO:0015930  

Subcellular location

Nucleus  

Length:

145

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02738

Exp number, first 60 AAs:

0

Total prob of N-in:

0.14206

outside

1  -  145

 

 

Pi

192.425612

Theta

155.987238

Tajima's D

0.006208

CLR

0.388131

CSRT

0.368981550922454

Interpretation

Uncertain