Gene

KWMTBOMO12882

Pre Gene Modal

BGIBMGA013961

Annotation

PREDICTED:_Down_syndrome_cell_adhesion_molecule-like_protein_Dscam2_[Plutella_xylostella]

Location

Bomo_Chr22(-):3218416-3222176      View in EpiBrowser

Full name

Ribosomal protein L19      

Location in the cell

Nuclear   Reliability : 2.338

CDS

ATGAAATTCGCAAAATTATTGGGGAATTACTGGTGGATCATACAGGATAAAGGGGACAAGGATAATCCTGTCAAATCTGCCATTGTGATATTCGACAGAAGTCTGGTAGTAATTGAAAATAATTTACTCATAGATCGTAACATAGTAGCTGTTACGATAGATACACAGGGACATAGAATCGGGTGCATCTCAGTTTACTGGGAGGATTACGTGAACGTGGACACATATCTAAACAAACTACAATACGTAATCAACAATCTAAAAACGGACACTTATATAGTTGGTGGTGATGTAAATGCTCGTAGCCAGTGGTGGGGATGCCCCAAAGACGATATAAGAGGAGCGGCTATCGCCGTTTTCTTAGCCCAGAATGATCTCCAAATACTAAACAAAGGAAACACCCCTACATTTTGGACTGTCAGACAAAACAGGCTGTACACAAGTATAATAGATATAACGGCATGCAGTGACGGACTTCTCAACTCAATATCAGATTGGAAAGTAGATGAGAATCTAATCACCACCTCCGATCATCGCTCAATCACGTTCAGCGTCGACCTTACCGGGAACAGAGGTTCTCAGAAAGGAAATCTTACCACTACAAAGAAATACAATACTAATAAAGCAAACTGGCCTAAATTCAAAAATAAACTACTAGAGCAATTCTCTGAACGAAATATCACAGTTGAAACCATCGCCTCAAAAACTGACAACGAAGAGTTCAACAAAATGGTAGAGGACTACGCGGGATGCATTGCGGTAGCTTGTGATTCCGCGATTCCTCTGATTGACCATAGTAAAAATCAATGTAGGCTATCCTGGTGGACCAAAGAACTAACCGAACTTAAAAATGAGGTTAAAAGAATCAGAAGCAAGATTAGGAAGGCAAACCCTAGAAGAAGGCCGCTTCTGATAAAAGATTATCAAGAAAGGTTAAAAGAATATAAACACACAATAATCACAACGAGGACCACCAGTTGGAAAGATTATACATCACGACAGAAGAGAGAATCGATGTGGGATAAATTCTACCGCATTATACGTACTAATAATAGAAGCAGAGATGAGGTGATGCTCAAGAAAGGGAATGACGTCCTCGATCCCCTCAAATCCGCAGAACTACTAGCTGATACATTCTATCCTAAGGACAATAAAGATATCGAAAACGAAGAACATCACCAATGTCCTAGATTCGGATTTAGACGCATAGAAACAGAACAGATCTTGGACTTTGCCATGGTCGCTCAAAACTTCCCCAGTATTATCGAGGACGACAGTGCTAGAGAAGCGTTCCTGAAATTCGCTATAAACAGTATAAAAATTGCCAACAACAGAAATAATAGTATAATGAAATACGCTATAGATTAA

Protein

MKFAKLLGNYWWIIQDKGDKDNPVKSAIVIFDRSLVVIENNLLIDRNIVAVTIDTQGHRIGCISVYWEDYVNVDTYLNKLQYVINNLKTDTYIVGGDVNARSQWWGCPKDDIRGAAIAVFLAQNDLQILNKGNTPTFWTVRQNRLYTSIIDITACSDGLLNSISDWKVDENLITTSDHRSITFSVDLTGNRGSQKGNLTTTKKYNTNKANWPKFKNKLLEQFSERNITVETIASKTDNEEFNKMVEDYAGCIAVACDSAIPLIDHSKNQCRLSWWTKELTELKNEVKRIRSKIRKANPRRRPLLIKDYQERLKEYKHTIITTRTTSWKDYTSRQKRESMWDKFYRIIRTNNRSRDEVMLKKGNDVLDPLKSAELLADTFYPKDNKDIENEEHHQCPRFGFRRIETEQILDFAMVAQNFPSIIEDDSAREAFLKFAINSIKIANNRNNSIMKYAID

Similarity

Belongs to the eukaryotic ribosomal protein eL19 family.

Uniprot

Q9BLI0   Q9BLH8   Q9BLI4   Q9BLH9   Q9BLI1   Q9BLI3   + More
Q9BLI2   A0A194QZG8   Q9BLI5   Q93139   A0A212F890   K7JMI9   A0A2R7WHA3   A0A1B6FCA5   A0A1Y3BRS2   A0A0J7KIV1   A0A2R7WW78   A0A1I8IBT3   A0A023EX80   A0A1S3D5J4   A0A087TI44   K7JWL9   A0A147BCI0   A0A0J7KIC2   A0A0J7MWN5   A0A0J7K3F1   A0A2R7WZJ4   X1XR79   A0A1B6D5E4   A0A224X653   A0A212FI97   A0A1B6E1N0   A0A1B6DRM7   A0A0K8TLH8   A0A0K8TL06   J9LES5   J9M8T8   A0A224X5M4   J9LM37   J9KPX6   A0A0J7KCD9   A0A0J7N8R4   A0A1I8FVG9   A0A2R7WZM4   A0A2R7WYT6   A0A1I8I4W7   A0A142LX43   T1HJW2   A0A0J7KTH2   A0A0J7KN48   A0A0J7KF91   X1XKA4   J9KRH3   K7JAI1   A0A0J7N8F6   A0A0K1IK29   A0A1B6G0A1   A0A0J7KQY4   J9JWJ3   A0A087TE52  

Pubmed

11319268    26354079    7623845    15247245    22118469    20075255    + More
26392545    25474469    29652888    26369729    25527032   

EMBL

AB046673    BAB21516.1    AB046675    BAB21518.1    AB046669    BAB21512.1    + More
AB046674    BAB21517.1    AB046672    BAB21515.1    AB046670    BAB21513.1    AB046671    BAB21514.1    KQ461108    KPJ08991.1    AB046668    BAB21511.1    D38414    BAA07467.1    AGBW02009775    OWR49941.1    AAZX01008070    KK854804    PTY18889.1    GECZ01021958    JAS47811.1    MUJZ01008278    OTF82483.1    LBMM01006940    KMQ90177.1    KK855758    PTY23794.1    GBBI01004920    JAC13792.1    KK115320    KFM64783.1    AAZX01018244    GEGO01007232    JAR88172.1    LBMM01006945    KMQ90173.1    LBMM01015285    KMQ84870.1    LBMM01015025    KMQ84953.1    KK856129    PTY24964.1    ABLF02021798    ABLF02021805    ABLF02021806    ABLF02023973    ABLF02031332    ABLF02031333    ABLF02031339    ABLF02046725    ABLF02054971    ABLF02056555    GEDC01016405    JAS20893.1    GFTR01008469    JAW07957.1    AGBW02008417    OWR53447.1    GEDC01005462    JAS31836.1    GEDC01008950    JAS28348.1    GDAI01002592    JAI15011.1    GDAI01002584    JAI15019.1    ABLF02008889    ABLF02041820    ABLF02007471    ABLF02007472    GFTR01008639    JAW07787.1    ABLF02014650    ABLF02019936    ABLF02057951    LBMM01009610    KMQ87992.1    LBMM01008226    KMQ89040.1    PTY24962.1    PTY23785.1    KU543682    AMS38369.1    ACPB03028300    LBMM01003366    KMQ93606.1    LBMM01005188    KMQ91737.1    LBMM01008445    KMQ88871.1    ABLF02011057    ABLF02048793    ABLF02020082    ABLF02020086    ABLF02020092    AAZX01006426    LBMM01008384    KMQ88925.1    KP771711    AKU04648.1    GECZ01013919    JAS55850.1    LBMM01004262    KMQ92649.1    ABLF02013358    ABLF02013361    ABLF02054869    KK114812    KFM63391.1   

Proteomes

UP000053240    UP000007151    UP000002358    UP000036403    UP000095280    UP000079169    + More
UP000054359    UP000007819    UP000015103   

PRIDE

Q9BLI4    Q9BLI3    Q9BLI2    Q9BLI5    Q93139   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF00075   RNase_H
PF07530   PRE_C2HC
PF12017   Tnp_P_element
PF00098   zf-CCHC
PF01280   Ribosomal_L19e
PF00004   AAA
PF17862   AAA_lid_3
PF16725   Nucleolin_bd
PF16012   DUF4780

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR012337   RNaseH-like_sf       
IPR036397   RNaseH_sf       
IPR002156   RNaseH_domain       
IPR036875   Znf_CCHC_sf       
IPR001878   Znf_CCHC       
IPR006579   Pre_C2HC_dom       
IPR021896   Transposase_37       
IPR039547   RPL19       
IPR000196   Ribosomal_L19/L19e       
IPR023638   Ribosomal_L19/L19e_CS       
IPR035970   60S_ribosomal_L19/L19e_sf       
IPR015972   Ribosomal_L19/L19e_dom1       
IPR033935   Ribosomal_L19_euka       
IPR003959   ATPase_AAA_core       
IPR027417   P-loop_NTPase       
IPR003960   ATPase_AAA_CS       
IPR031996   NVL2_nucleolin-bd       
IPR041569   AAA_lid_3       
IPR003593   AAA+_ATPase       
IPR038100   NLV2_N_sf       
IPR031961   DUF4780       

SUPFAM

SSF56219   SSF56219        + More
SSF53098   SSF53098       
SSF57756   SSF57756       
SSF48140   SSF48140       
SSF52540   SSF52540       

Gene 3D

3.60.10.10     3.30.420.10     1.10.1650.10     1.10.10.2010    

CDD

cd01417  Ribosomal_L19e_E

ProteinModelPortal

Q9BLI0   Q9BLH8   Q9BLI4   Q9BLH9   Q9BLI1   Q9BLI3   + More
Q9BLI2   A0A194QZG8   Q9BLI5   Q93139   A0A212F890   K7JMI9   A0A2R7WHA3   A0A1B6FCA5   A0A1Y3BRS2   A0A0J7KIV1   A0A2R7WW78   A0A1I8IBT3   A0A023EX80   A0A1S3D5J4   A0A087TI44   K7JWL9   A0A147BCI0   A0A0J7KIC2   A0A0J7MWN5   A0A0J7K3F1   A0A2R7WZJ4   X1XR79   A0A1B6D5E4   A0A224X653   A0A212FI97   A0A1B6E1N0   A0A1B6DRM7   A0A0K8TLH8   A0A0K8TL06   J9LES5   J9M8T8   A0A224X5M4   J9LM37   J9KPX6   A0A0J7KCD9   A0A0J7N8R4   A0A1I8FVG9   A0A2R7WZM4   A0A2R7WYT6   A0A1I8I4W7   A0A142LX43   T1HJW2   A0A0J7KTH2   A0A0J7KN48   A0A0J7KF91   X1XKA4   J9KRH3   K7JAI1   A0A0J7N8F6   A0A0K1IK29   A0A1B6G0A1   A0A0J7KQY4   J9JWJ3   A0A087TE52  

PDB

1WDU     E-value=1.13994e-29,     Score=324

KEGG

105841336    no KO assigned | (RefSeq) uncharacterized LOC105841336

GO

GO:0016021   GO:0004523   GO:0003676   GO:0008270   GO:0003964   GO:0004519   GO:0004803   GO:0006313   GO:0003735   GO:0022625   GO:0006412   GO:0003723   GO:0005524  

PANTHER

PTHR10722  

Length:

455

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.000710000000000001

Exp number, first 60 AAs:

0.00025

Total prob of N-in:

0.00309

outside

1  -  455

 

 

Pi

21.013213

Theta

4.955533

Tajima's D

-1.251795

CLR

40.572289

CSRT

0.0889455527223639

Interpretation

Uncertain