SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO12879
Pre Gene Modal
BGIBMGA012682
Annotation
PREDICTED:_decaprenyl-diphosphate_synthase_subunit_2_[Amyelois_transitella]
Location in the cell
Mitochondrial   Reliability : 1.962
 

Sequence

CDS
ATGAGTTTCAGTAGATTGTGTCATTTGAGGTGTGCTGTGAGATGTGATTTGGTGAAAGTTTCCTCATCAAGCGCATTCATTGCGAAACTTGGGGGACCTTGCGCGAAGGAACTAAGCACAAGTAGCACTCAGAGAGGCAGTGTTGCCCAACATCACTCCAAGCCGGATTGGAACAGAGCTGTTAGCGAAGCCGAGAAGATTGTTGGCTATCCCACATCCTTCCTGAGCTTAAGGTGGATTTTGAGCGATGAGATTGCGAATGTTGCGCTTCATCTACGCAAACTAGTTGGCAGTAATCATCCTTTACTGAAAACTGCCAAAAATCTAATTTACAATGGTAAGAATAATATGCAAGCATGGGGTCTCATTGTCTTGCTGGTGTCTAAAGCTGCTGGTCACAGTCCAGAGATACCTGACATGGAGCAGGATAAAGCTGCAGGAGTATTACATAGTCAGCGTGCCTTAGCCGAAGTCACCGAGATGATCCGGACCTCGCATTTGGTGCACAAAGGTCTCGTCAACATGAACGCGAGACAGCGGGCTTCCATAACTGAAGAACCTGATGATATGATGTTCGGAAATAAAATTGCTCTACTCAGTGGAGATTATTTACTGGCCAATTCTTGTTCAGAACTGGCCAATTTAAGGAATCAAGAGTTGGTAGAGCTGATGTCTTCCGCCGTTCGAGACCTCGCCGAGGCCGAGTTCATGGGTGAACGCGACGATCAAAACAATCCTCTACCCTCGAGACCTTTATCTAAAGAAGAGAGAGAGGAACCTACAGAGTGGGACTGCATCCTGGAGCCGCTGCCGATGCGCGGCGTGCTGGGCACGGCGGCCCGCGAGTGGGCGGCGCGGCACGTGCTGGCGGCCGGCGCGCTGCTCGGCAAGAGTTGCTCCGCCGCGCTCAAGCTGGCCGGCCACGACGCGCACATGCAGACGCAGGGCTACCTGTTCGGCTGCCACCTGGCGCTGGCGTGGCAGGCGTACCTGGACCTGGAGGCGTTCAGCGGCCCCGAGCCCAGCTCGTTCTCGCTGGTGGGCGCGCCGCTCGCCTTCACGCTGGACGCGCGCCCGCACCTCTACTCCTACATCGAGGCGGGCCGCGCCAGCGTGCACCACGTCGACTACCACGCCTTGTACAAAGCGGTGCTGGAAGGCGACGGGCTCGAGCAGACGAAGCGCGTGCAGCACGAGCACATCGCGCGGGCGCGCGCGCAGCTGCGCAGCCTGCCGCCCGGGGACGCGCGCACCGCGCTCGCCAACATACTCGTCGCCATGCACCAGGACCACTACTGA
Protein
MSFSRLCHLRCAVRCDLVKVSSSSAFIAKLGGPCAKELSTSSTQRGSVAQHHSKPDWNRAVSEAEKIVGYPTSFLSLRWILSDEIANVALHLRKLVGSNHPLLKTAKNLIYNGKNNMQAWGLIVLLVSKAAGHSPEIPDMEQDKAAGVLHSQRALAEVTEMIRTSHLVHKGLVNMNARQRASITEEPDDMMFGNKIALLSGDYLLANSCSELANLRNQELVELMSSAVRDLAEAEFMGERDDQNNPLPSRPLSKEEREEPTEWDCILEPLPMRGVLGTAAREWAARHVLAAGALLGKSCSAALKLAGHDAHMQTQGYLFGCHLALAWQAYLDLEAFSGPEPSSFSLVGAPLAFTLDARPHLYSYIEAGRASVHHVDYHALYKAVLEGDGLEQTKRVQHEHIARARAQLRSLPPGDARTALANILVAMHQDHY

Summary

Similarity
Belongs to the FPP/GGPP synthase family.
EMBL
NWSH01004165    PCG65416.1    AGBW02009028    OWR51824.1    KQ460416    KPJ14892.1    + More
KQ459324    KPJ01613.1    APGK01054216    APGK01054217    APGK01054218    KB741248    KB631854    ENN71929.1    ERL86744.1    GEZM01016911    JAV91048.1    CVRI01000043    CRK95970.1    AJWK01017431    UFQS01000067    UFQT01000067    SSW98956.1    SSX19338.1    KQ971343    KYB27485.1    CH477226    EAT47123.1    GFDL01009756    JAV25289.1    GBXI01016343    GBXI01001023    JAC97948.1    JAD13269.1    JXUM01021119    KQ560591    KXJ81757.1    JXJN01005555    GAMC01002571    JAC03985.1    JRES01000128    KNC33931.1    GDHF01015616    JAI36698.1    GGFK01005952    MBW39273.1    GAKP01003492    GAKP01003490    JAC55462.1    ATLV01019157    KE525263    KFB43820.1    GGFK01005960    MBW39281.1    CCAG010008960    GGFJ01005271    MBW54412.1    GGFJ01005270    MBW54411.1    ADMH02001837    ETN60973.1    DS232561    EDS43446.1    AXCN02000482    GGFJ01005859    MBW55000.1    GGFJ01005580    MBW54721.1    GGFJ01005644    MBW54785.1    CH891933    EDX00064.1    CM002912    KMZ00916.1    CM000159    EDW95095.1    CH480826    EDW44302.1    CM000363    EDX11319.1    AE014296    AY051597    AAF51668.1    AAK93021.1    OUUW01000002    SPP76901.1    CH940647    EDW68494.1    CH379069    EAL30715.1    CH954178    EDV52595.1    AXCM01006428    KA646386    AFP61015.1    CH964095    EDW79309.2    AAAB01008960    EAA11709.4    KZ288444    PBC25668.1    APCN01000091    NEVH01013268    PNF29031.1    CH902618    EDV39785.1    GECZ01031525    GECZ01020753    GECZ01020553    GECZ01017953    GECZ01016238    GECZ01013282    GECZ01002758    JAS38244.1    JAS49016.1    JAS49216.1    JAS51816.1    JAS53531.1    JAS56487.1    JAS67011.1    CH933809    EDW17473.1    KQ414585    KOC70537.1    PNF29029.1    KK853097    KDR11434.1    CH479191    EDW26299.1    GEBQ01029358    JAT10619.1    EDO63779.1    ETN60974.1    ABLF02016144    GGMR01010785    MBY23404.1    KFB43819.1    GFXV01000039    MBW11844.1    CH916366    EDV95684.1    NNAY01001234    OXU24665.1    KF673862    AHB81558.1    CP012525    ALC43608.1    JXUM01021120    JXUM01021121    KXJ81758.1    EDS43445.1    KQ434870    KZC09559.1    GGMS01007608    MBY76811.1    KC431244    AGJ83980.1    GBGD01001669    JAC87220.1    GECL01000422    JAP05702.1   
Pfam
PF00348   polyprenyl_synt
Interpro
IPR000092   Polyprenyl_synt        + More
IPR008949   Isoprenoid_synthase_dom_sf       
SUPFAM
SSF48576   SSF48576       
Gene 3D
PDB
3AQ0     E-value=7.40496e-19,     Score=231

Ontologies

Topology

Length:
432
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.01408
Exp number, first 60 AAs:
0.00022
Total prob of N-in:
0.00425
outside
1  -  432
 
 

Population Genetic Test Statistics

Pi
207.3782
Theta
141.261945
Tajima's D
0
CLR
16.84893
CSRT
0.365481725913704
Interpretation
Uncertain
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