SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO12875  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA012680
Annotation
PREDICTED:_four_and_a_half_LIM_domains_protein_2-like_isoform_X3_[Amyelois_transitella]
Location in the cell
Extracellular   Reliability : 3.05
 

Sequence

CDS
ATGGCCGACGTTGACGTTCAAGTCCAGTACACCACCACGGAACGCAAAACTAGGAAGGTCAAGAAGACCTCCAAGCGTAGGGAGTCCAAGGACGGCGAGGTGACCGTCACCGAAGTAGAACAGACCAACACCACCAATAACGACGATGGCGGTGAATACACCAAGGCCATGAACAAGGACTGGCATAGCGGTCACTTCTGCTGCTGGCAGTGCGACGAGTCGCTAACTGGCCAGCGCTATGTTCTTAGGGATGAACACCCCTACTGCATCAAGTGCTATGAAAGCGTCTTCGCCAATGGCTGCGAAGAGTGCAACAAGATCATCGGCATTGACTCTAAGGATCTGTCGTACAAGGACAAGCACTGGCACGAGGCCTGCTTCTTGTGCGCCAAGTGCCGCGTCTCTCTGGTCGACAAGCAGTTCGGCTCCAAGCTCGACAAGATCTACTGCGGTAACTGCTATGACGCCCAGTTCGCAAGCCGCTGCGATGGATGCGGCGAGGTGTTCCGTGCTGGAACCAAGAAGATGGAGTACAAGACCAGGCAGTGGCACGAGAAGTGCTTCTGCTGCGTTGTCTGCAAGAACCCGATCGGCACGAAGAGCTTCATCCCGCGCGAGCAAGAGATCTACTGCGCCGGCTGCTACGAGGACAAGTTCGCCACCCGCTGCGTCAAGTGTAACAAGATAATCACACAAGGCGGCGTGACGTACAAGAACGAGCCATGGCACCGCGAGTGCTTCACGTGCACGAACTGCAACACGTCGCTCGCCGGCCAGCGGTTCACTTCGCGCGACGAGAAGCCCTACTGCGCCGAGTGCTTCGGGGAACTGTTCGCCAAGCGCTGCACTTCTTGCACCAAGCCCATCACAGGTATCGGCGGCACCCGCTTCATCTCGTTCGAAGACAGACACTGGCACAACGACTGCTTCATCTGCGCGCAGTGCAAGACCTCGCTCGTCGGCAAGGGCTTCATCACCGACGGACAGGACATCATCTGTCCCGAGTGCGCCAAGCAGAAGCTCATCGAACATACCATACTACCGGTAGTCGCTAACGCCCGAGACTGGTGCGCGTTCAGAAAGCAGGACACCTCGAGCGAAAAGATTTACGACATCACTGACAAATTTAACTTTCGCAAGGGCAGGGCCAACGTTAGTACGGTGCCCAAATAA
Protein
MADVDVQVQYTTTERKTRKVKKTSKRRESKDGEVTVTEVEQTNTTNNDDGGEYTKAMNKDWHSGHFCCWQCDESLTGQRYVLRDEHPYCIKCYESVFANGCEECNKIIGIDSKDLSYKDKHWHEACFLCAKCRVSLVDKQFGSKLDKIYCGNCYDAQFASRCDGCGEVFRAGTKKMEYKTRQWHEKCFCCVVCKNPIGTKSFIPREQEIYCAGCYEDKFATRCVKCNKIITQGGVTYKNEPWHRECFTCTNCNTSLAGQRFTSRDEKPYCAECFGELFAKRCTSCTKPITGIGGTRFISFEDRHWHNDCFICAQCKTSLVGKGFITDGQDIICPECAKQKLIEHTILPVVANARDWCAFRKQDTSSEKIYDITDKFNFRKGRANVSTVPK

Summary

EMBL
RSAL01000108    RVE47237.1    ADTU01019344    ADTU01019345    ADTU01019346    ADTU01019347    + More
ADTU01019348    ADTU01019349    MH366203    QBB02012.1    AE014296    ADV37558.1    CM000159    KRK02057.1    CM002912    KMZ00144.1    GBYB01011528    JAG81295.1    CH902618    KPU78563.1    KQ979568    KYN20757.1    CH379070    KRT08811.1    KZ288310    PBC28568.1    JR039645    AEY58791.1    FX985397    BAX07410.1    GBRD01001794    JAG64027.1    GECZ01023217    JAS46552.1    IACF01000609    LAB66374.1    APCN01004393    ATLV01021957    KE525326    KFB47014.1    AAAB01008960    EAA10887.3    GGFL01004270    MBW68448.1    FX985395    BAX07408.1    GAMD01003188    JAA98402.1    KK852588    KDR20775.1    GFDF01006486    JAV07598.1    GFDL01002219    JAV32826.1    FX985394    BAX07407.1    GFDF01006778    JAV07306.1    GAPW01002310    JAC11288.1    CH477231    EAT46934.1    GFDF01007568    JAV06516.1    GFDF01006478    JAV07606.1    GFDF01006477    JAV07607.1    GFDL01000395    JAV34650.1    GGFL01004792    MBW68970.1    GGFK01008812    MBW42133.1    GFDL01000405    JAV34640.1    GFDL01000409    JAV34636.1    AK417620    BAN20835.1    KQ981864    KYN34382.1    GDUN01000119    JAN95800.1    KQ977115    KYN05627.1    GFDL01000371    JAV34674.1    GFDL01000372    JAV34673.1    GAHY01000529    JAA76981.1    CH963876    KRF98548.1    GGMS01013068    MBY82271.1    GBHO01002133    GBHO01002132    GBRD01001793    JAG41471.1    JAG41472.1    JAG64028.1    GBGD01002003    JAC86886.1    GDHF01024400    JAI27914.1    GBXI01015607    GBXI01013991    JAC98684.1    JAD00301.1    EDW76927.1    KMZ00136.1    AGB94669.1    KPU78557.1    KMZ00135.1    KMZ00139.1    BT100317    AAN11714.1    AAS64978.1    ACZ54679.1    CH933809    KRG05764.1    KRT08810.1    KMZ00137.1    KMZ00138.1    AY069696    BT009969    AJ418713    AAF49398.2    AAL39841.1    AAQ22438.1    AAS64977.1    AFH04479.1    CAD11441.1    GBRD01001792    JAG64029.1    GDHF01033277    GDHF01031869    JAI19037.1    JAI20445.1    CH940647    KRF84140.1    OUUW01000009    SPP85192.1    KRT08805.1    KRT08808.1    KA646811    AFP61440.1    KRG05767.1    GFXV01006486    MBW18291.1    GGMR01019846    MBY32465.1    GAMC01011764    GAMC01011759    JAB94791.1    KRG05762.1    GDKW01002548    JAI54047.1    EDW94779.1    CH480815    EDW41827.1    CH954178    EDV52022.1    GBXI01012131    JAD02161.1    GBXI01003041    JAD11251.1    CM000363    EDX10795.1    KMZ00132.1    BT044112    AAF49396.2    ACH92177.1    AY113460    AAM29465.1    KPU78558.1    EZ422453    ADD18729.1    EDW17795.1    EDY74121.1    CH479208    EDW31252.1   
Pfam
PF00412   LIM        + More
PF06297   PET
Interpro
IPR010442   PET_domain        + More
IPR037987   FHL2/3/5       
IPR001781   Znf_LIM       
PDB
2MIU     E-value=2.25128e-24,     Score=278

Ontologies

Topology

Length:
390
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0
Exp number, first 60 AAs:
0
Total prob of N-in:
0.02074
outside
1  -  390
 
 

Population Genetic Test Statistics

Pi
223.688857
Theta
170.833904
Tajima's D
0.990036
CLR
0.29355
CSRT
0.661566921653917
Interpretation
Uncertain
Peptides ×
Source Sequence Identity Evalue
28467696 AMNIYGDVVSEAK 95.83 2e-11
28556443 CTSCTKPITGIGGTR 100.00 8e-09
28556443 DEKPYCAECFGELFAK 100.00 8e-09
28467696 FISFEDR 100.00 2e-08
28467696 EQEIYCAGCYEDK 100.00 2e-05
26822097 DEKPYCAECFGEIFAK 100.00 7e-05
26280517 GDISEAEHIEHGMSESIDEKR 100.00 7e-05
28467696 GFIIQGDK 100.00 7e-05
28556443 GFITDGQDIICPECAK 100.00 7e-05
28556443 GFITDGQDIICPECAK 100.00 7e-05
28556443 DWHSGHFCCWQCDESLTGQR 100.00 7e-05
28556443 EQEIYCAGCYEDK 100.00 7e-05
28556443 DEKPYCAECFGEL 100.00 8e-05
28556443 DWHSGHFCCWQCDESLTGQR 100.00 1e-04
28467696 RCSEIDFYQR 100.00 3e-04
26822097 DWHSGHFCCWQCDESITGQR 100.00 7e-04
28467696 CVVWDIR 100.00 7e-04
26822097 YVIRDEHPYCIK 100.00 0.001
26280517 IWNTFHRPDIVR 100.00 0.001
28467696 IYCAPGSVGISTTK 100.00 0.001
28556443 HWHNDCFICAQCK 100.00 0.001
26822097 CFCCVVCK 100.00 0.001
26280517 CTETVDGYR 100.00 0.001
28467696 CTPTVYPAEPFDPAADAETIRK 100.00 0.001
28556443 CDGCGEVFR 100.00 0.001
28556443 CDGCGEVFR 100.00 0.001
26822097 CTSCTKPITGIGGTR 100.00 0.001
28467696 HWHEACFICAK 100.00 0.001
28556443 GFITDGQDIICPECAK 100.00 0.001
28556443 VLPSITSEVLK 100.00 0.007
26822097 FISFEDR 100.00 0.017
26280517 EPMPPMPNIPPIR 100.00 0.017
28467696 EQEIFFFHEISPGSCFFQPR 100.00 0.017
28556443 ECFTCTNCNTSLAGQR 100.00 0.017
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