SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO12870
Pre Gene Modal
BGIBMGA012706
Annotation
PREDICTED:_X-linked_retinitis_pigmentosa_GTPase_regulator-like_isoform_X1_[Bombyx_mori]
Location in the cell
Cytoplasmic   Reliability : 1.484 Nuclear   Reliability : 1.855
 

Sequence

CDS
ATGCTTTCTTGGTACACAGAGAATGGTCGTGTGTTTGTGTTCGGAGCTAACACGTGGGGTCAGCTGGGCCTTGGTCATAAAGATGAGGTGACGCGGCCTAGTTGCGTGAAATGGCTCAAACCGCAGCGAACAATGTTCGTTGCGTGCGGACGAGCGCACACCGTTTTCGTTACAGAAACAAACGCTATATACACCGTGGGCTGCAACGATGAGGGGCAGCTCGGCACCGGCGATATGGAACACAGCACAGTTCCGCAAAGTGTCGAACTTGAGGAGCCCATAGTCGTGAAACAGATATCCGCTGGAAGCAACCACACGGCTCTACTGACTGAGGATGGTCGCGTGTTTATGTGCGGCTCCAACTCCGAAGGGCAGCTCGGTTTAGGCGAAGACTCACGATCCGCTGTACGGTTCACTGAACTCAAGTTCATGGAGAAGATAGCCTTCATCGAATGCGGGTATTATCACACCGTCTTTATAACTACCAAAGGAGCAGTCTTTGTAACTGGCGACAACGAAAATCAGAAACTAGGTATCCAGAAAATAGCCACAAGCATCTACGTTCCGGAAGTTTTGCCCATAAGTACTCCAATAAAGAGCGCCTGCTGTGGGGCTGCACACACGTTCCTTCTGACAATGGATGAATCTAAAATATTGGGCTTCGGTTCCAATGAAAAGGGTCAGCTGGGAATGCCTCGAGAGGTCGAGTTTGTTACTGAGCCTAGCGAAATTGACATGGACATTATGTTCGACGGATACCAACTAAAGTTGGTCGCCTACAACGGACTACTGTACACGTGCGGCGAGTCGAGGCATAATAAACTGTGTTTGGAAGATATCGACGACACCAACTCAAACGAGGTGGTCCCCAATCAATACACCCCTAAACGGGTCACCGCCATGAATGGGCACATCGTAGACAATGTGGCGTGTGGGGGCTGCCACACTCTACTTACGGCCACCAAAGGCTCGAACGCGGACTTCACGAACAACGATTTCAACATTATTAACGAAGCCACCAGACAAATAACTCTCACCGAATTACCGCCCTTACAGAAAATACCAGCGATGAACAAAACCGAAGAGAATCCGTTCTTAATTGAAGACGTGACAAACTCTAACGTGGACGACAAACAGAAAGCGGATAACTTGAATGGAAACACGAACGAGGAATCCGGATCAATAGACTCGTTAGAGGCCAACGTGAGCGGATCACACATCGTAAACATAAACGACCTTGAAATTGAAAATGGAAGTACGCATGACCTGGCTGACCTAAACAAAGACAACATTGATCGTGTTTCCGACACAGGTGACTCGGCTATGGACGTGGTCGAAATTATGGACACGGTGCTTGACGATATGCAGACAAATGTTCATGATTCTGTAAAAGAGGTCACCGATACAGTCCATGAGAAAAAGGAAGTGATTGAAGAAGTAATTCACAAAACGGAAGCAAATGCAAAAGGGCTGCGCGATGATGTCACAAAGATTTTGACCGTTCCTGATAAAGTAGTCGAAATTGCAAATTCCCCGCTGCCTAAAACACCCATATTGCAAGAACTACTCCACGTTCCCGATATATCACAACTCAGTCCTGCTCACAGTAAGCACAGTGACGAGAAAAGTGAAACAGGCCAGTCCGAAAACGAAACAATAACATGCGCATCGGATAAATCTAGTCCTCAAGCTGGGAAGACAGCTAAAACACAAGCCGTTATGCCGATTGTCAGGAGCGAGGACCATATAGACTCTCATGTTGATGAAACCAATGAAGAATCAGATGTTGTTGTTAATAAATTGGAAGAGAAGGGTCGATTTGCGAGGATGTTTCAGTCAATACGAGACAAGGAAAACTCTTGTATGGGGAAGGGCAAAGTCATTGAAGAGAAAGTTGTTGAGACGGTTCACAAAGGCATCGACAACGCCGAAGAGTCGATTCACAAAGTTGAAGAAACCGTTGAAACAGAGATACGGAACCAGACAAACTCTAGAACCTGCACTATATTGTAA
Protein
MLSWYTENGRVFVFGANTWGQLGLGHKDEVTRPSCVKWLKPQRTMFVACGRAHTVFVTETNAIYTVGCNDEGQLGTGDMEHSTVPQSVELEEPIVVKQISAGSNHTALLTEDGRVFMCGSNSEGQLGLGEDSRSAVRFTELKFMEKIAFIECGYYHTVFITTKGAVFVTGDNENQKLGIQKIATSIYVPEVLPISTPIKSACCGAAHTFLLTMDESKILGFGSNEKGQLGMPREVEFVTEPSEIDMDIMFDGYQLKLVAYNGLLYTCGESRHNKLCLEDIDDTNSNEVVPNQYTPKRVTAMNGHIVDNVACGGCHTLLTATKGSNADFTNNDFNIINEATRQITLTELPPLQKIPAMNKTEENPFLIEDVTNSNVDDKQKADNLNGNTNEESGSIDSLEANVSGSHIVNINDLEIENGSTHDLADLNKDNIDRVSDTGDSAMDVVEIMDTVLDDMQTNVHDSVKEVTDTVHEKKEVIEEVIHKTEANAKGLRDDVTKILTVPDKVVEIANSPLPKTPILQELLHVPDISQLSPAHSKHSDEKSETGQSENETITCASDKSSPQAGKTAKTQAVMPIVRSEDHIDSHVDETNEESDVVVNKLEEKGRFARMFQSIRDKENSCMGKGKVIEEKVVETVHKGIDNAEESIHKVEETVETEIRNQTNSRTCTIL

Summary

Pfam
PF00415   RCC1
Interpro
IPR009091   RCC1/BLIP-II        + More
IPR000408   Reg_chr_condens       
SUPFAM
SSF50985   SSF50985       
Gene 3D
PDB
4JHN     E-value=5.04055e-55,     Score=545

Ontologies

GO

Topology

Length:
670
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.2516
Exp number, first 60 AAs:
0.00802
Total prob of N-in:
0.01147
outside
1  -  670
 
 

Population Genetic Test Statistics

Pi
148.59268
Theta
144.833189
Tajima's D
0.098727
CLR
22.719337
CSRT
0.397630118494075
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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