Gene

KWMTBOMO12862

Pre Gene Modal

BGIBMGA012672

Annotation

PREDICTED:_nucleoporin_NUP53_[Amyelois_transitella]

Location

Bomo_Chr22(+):2357572-2359336      View in EpiBrowser

Full name

Nucleoporin NUP53       + More
Nucleoporin Nup35      

Alternative Name

35 kDa nucleoporin
Nuclear pore complex protein Nup35
Nucleoporin Nup53

Location in the cell

Nuclear   Reliability : 2.591

CDS

ATGGAACCAATGACACTTGGTAGTCCTACACATTCGCCCTCAGGGAGCCCTAATGTAGGGTATTTACCGCCTTTTCTGCTGGGTGAAATAAATCCGCCAACAACACCTAGAACAAATAGTTTGTCCCCAACTAAAGGACGAAATCTAGCATTTGGTTCACCTACCAGTCCTAGTAAAACATCAACACCAGATCAAAAAATATACCGTCAGAACATCTCTATGCACCAGCAAGCGCTGTATAACCAACAAAGCACATATACTAATATTCCGACTTCACCCAACATATCTTACTCGACTAAGCCGAATGGTCCACCCATTGAAGACTTATTCGACACAATAAAAAGCAATGAGCCGTCTGTAAATAAATCATTGTATAATGATCACAGTTTTCTTGGCTATGGAAATAATATGATGTTACAAAATTCCTATGGAAATAACATCGATCTGTCTGTTAACAATCAATCTTTATCCCAATGGCAGGATATTTGTCAAGAACAAGATGAATACTGGGTGACTGTGTTTGGGTTTCCACCTAATGCTGCTAATACAGTATTGGCAAGATTCAGCAACTGTGGTGCTATTCTGGACAAGCAGTATCCTACACAAGGCAACTGGGCCCACATTAGGTATGCGACAAGAGCAGAGAAAGAGAGAGCCATGGCTTTAAGTGGAAGGCAAGTCTTGCCAGGGGTAATGGTTGGAGTAATTGAGTGCAAGGAACCACCCCGAATATCTTTTACTAGTCCTGGAATTATGTCACCCGAAAGGCAAACTACTGGAGCCCGATCCCTATGTCCAACACCAATACCCTCAGCACCAGTCCCTCAGAAGTCTAGTGGTCTCATTTCCAAAGCATTAGACTATGTGCTGGGATGGTGA

Protein

MEPMTLGSPTHSPSGSPNVGYLPPFLLGEINPPTTPRTNSLSPTKGRNLAFGSPTSPSKTSTPDQKIYRQNISMHQQALYNQQSTYTNIPTSPNISYSTKPNGPPIEDLFDTIKSNEPSVNKSLYNDHSFLGYGNNMMLQNSYGNNIDLSVNNQSLSQWQDICQEQDEYWVTVFGFPPNAANTVLARFSNCGAILDKQYPTQGNWAHIRYATRAEKERAMALSGRQVLPGVMVGVIECKEPPRISFTSPGIMSPERQTTGARSLCPTPIPSAPVPQKSSGLISKALDYVLGW

Description

Functions as a component of the nuclear pore complex (NPC).
Functions as a component of the nuclear pore complex (NPC) (By similarity). May have a role in the organization of the inner nuclear membrane proteins at the nuclear envelope together with Nup154 (PubMed:22718353).

Subunit

Interacts with Nup154.

Similarity

Belongs to the Nup35 family.

Keywords

Complete proteome   mRNA transport   Nuclear pore complex   Nucleus   Protein transport   Reference proteome   Translocation   Transport  

Feature

chain  Nucleoporin Nup35

Uniprot

H9JT10   A0A194Q7X1   A0A194RBB7   A0A212EVW4   A0A2A4IXP4   A0A437BA28   + More
S4PJN0   A0A2H1V974   A0A0L7LF82   A0A1B0CVQ9   A0A1I8MGK4   A0A1B0D6N0   A0A0T6B5I9   A0A1I8PHD4   A0A1L8DY11   Q17DT3   A0A0L0BUL8   A0A182GCB0   D6WIX8   B4NUM9   A0A182JMS3   Q9VWS2   A0A1Q3EX33   B4I6V0   A0A087ZYB2   A0A1A9VSL4   A0A2A3EF63   B3NUL8   A0A336MHE2   A0A1W4UDT6   A0A1A9V8J2   B4L3B4   A0A1A9ZZX7   A0A336MCG4   W8CE75   A0A084WFX4   J3JT95   U4UNE9   N6TAL2   B4PWD1   B4M1B3   A0A0Q9WDM8   Q7PPM4   A0A1Y1L1J4   A0A0M4EM12   A0A067QUU3   E0VNL1   A0A0M9A1X5   B4ND93   A0A3B0J4R2   A0A310SFI0   B0WQV6   A0A0L7R0L4   B3MVP9   A0A1A9Z4Z1   E9IX08   B4JL90   A0A232EL39   B4H7G3   A0A2P8ZDU8   A0A0J7KY97   E2A005   A0A1A9WSD6   A0A195B0N8   A0A158NKH9   A0A195FC38   A0A151IJZ9   A0A2J7QSD7   A0A151J239   A0A1A9ZHJ6   A0A1B6I023   A0A1B6L809   A0A2K5CBN2   A0A151WTX8   A0A0P5DW53   A0A2L2YAU6   A0A2K6NRE1  

Pubmed

19121390    26354079    22118469    23622113    26227816    25315136    + More
17510324    26108605    26483478    18362917    19820115    17994087    10731132    12537572    12537569    22718353    24495485    24438588    22516182    23537049    17550304    12364791    28004739    24845553    20566863    21282665    28648823    29403074    20798317    21347285    26561354    25362486   

EMBL

BABH01030752    KQ459324    KPJ01637.1    KQ460416    KPJ14912.1    AGBW02012108    + More
OWR45626.1    NWSH01005788    PCG63952.1    RSAL01000108    RVE47246.1    GAIX01001366    JAA91194.1    ODYU01001347    SOQ37403.1    JTDY01001367    KOB74065.1    AJWK01031027    AJVK01026070    LJIG01009705    KRT82545.1    GFDF01002939    JAV11145.1    CH477291    EAT44579.1    JRES01001305    JRES01000781    KNC23693.1    KNC28368.1    JXUM01054003    JXUM01077311    KQ563000    KQ561800    KXJ74670.1    KXJ77498.1    KQ971342    EFA03859.1    CH984138    EDX16676.1    AE014298    AY061318    AAL28866.1    GFDL01015195    JAV19850.1    CH480823    EDW56048.1    KZ288266    PBC30124.1    CH954180    EDV46615.1    UFQT01001276    SSX29814.1    CH933810    EDW07042.1    UFQT01000646    SSX26087.1    GAMC01000686    JAC05870.1    ATLV01023407    KE525343    KFB49118.1    BT126451    AEE61415.1    KB632288    ERL91540.1    APGK01037392    KB740948    ENN77314.1    CM000162    EDX02749.1    CH940651    EDW65467.1    KRF82246.1    AAAB01008944    EAA10168.4    GEZM01069078    JAV66658.1    CP012528    ALC48646.1    KK853376    KDR08044.1    DS235340    EEB14967.1    KQ435760    KOX75630.1    CH964239    EDW82802.1    OUUW01000002    SPP76545.1    KQ773583    OAD52370.1    DS232046    EDS33036.1    KQ414670    KOC64373.1    CH902625    EDV35044.1    GL766616    EFZ14925.1    CH916370    EDW00343.1    NNAY01003649    OXU19055.1    CH479218    EDW33774.1    PYGN01000086    PSN54658.1    LBMM01002114    KMQ95259.1    GL435531    EFN73245.1    KQ976692    KYM77855.1    ADTU01018847    KQ981693    KYN37767.1    KQ977294    KYN03964.1    NEVH01011876    PNF31485.1    KQ980439    KYN16052.1    GECU01032424    GECU01027429    JAS75282.1    JAS80277.1    GEBQ01020236    JAT19741.1    KQ982762    KYQ51085.1    GDIP01150692    GDIQ01167487    GDIQ01089349    LRGB01000745    JAJ72710.1    JAK84238.1    KZS16170.1    IAAA01010206    LAA05281.1   

Proteomes

UP000005204    UP000053268    UP000053240    UP000007151    UP000218220    UP000283053    + More
UP000037510    UP000092461    UP000095301    UP000092462    UP000095300    UP000008820    UP000037069    UP000069940    UP000249989    UP000007266    UP000000304    UP000075880    UP000000803    UP000001292    UP000005203    UP000078200    UP000242457    UP000008711    UP000192221    UP000009192    UP000092445    UP000030765    UP000030742    UP000019118    UP000002282    UP000008792    UP000007062    UP000092553    UP000027135    UP000009046    UP000053105    UP000007798    UP000268350    UP000002320    UP000053825    UP000007801    UP000001070    UP000215335    UP000008744    UP000245037    UP000036403    UP000000311    UP000091820    UP000078540    UP000005205    UP000078541    UP000078542    UP000235965    UP000078492    UP000233020    UP000075809    UP000076858    UP000233200   

PRIDE

H9JT10    Q9VWS2   

Pfam

PF05172   Nup35_RRM        + More
PF13895   Ig_2

Interpro

IPR012677   Nucleotide-bd_a/b_plait_sf        + More
IPR035979   RBD_domain_sf       
IPR017389   Nucleoporin_NUP53       
IPR007846   RRM_NUP35_dom       
IPR036179   Ig-like_dom_sf       
IPR013783   Ig-like_fold       
IPR007110   Ig-like_dom       
IPR003599   Ig_sub       
IPR036691   Endo/exonu/phosph_ase_sf       

SUPFAM

SSF54928   SSF54928        + More
SSF48726   SSF48726       
SSF56219   SSF56219       

Gene 3D

3.30.70.330     2.60.40.10     3.60.10.10    

ProteinModelPortal

H9JT10   A0A194Q7X1   A0A194RBB7   A0A212EVW4   A0A2A4IXP4   A0A437BA28   + More
S4PJN0   A0A2H1V974   A0A0L7LF82   A0A1B0CVQ9   A0A1I8MGK4   A0A1B0D6N0   A0A0T6B5I9   A0A1I8PHD4   A0A1L8DY11   Q17DT3   A0A0L0BUL8   A0A182GCB0   D6WIX8   B4NUM9   A0A182JMS3   Q9VWS2   A0A1Q3EX33   B4I6V0   A0A087ZYB2   A0A1A9VSL4   A0A2A3EF63   B3NUL8   A0A336MHE2   A0A1W4UDT6   A0A1A9V8J2   B4L3B4   A0A1A9ZZX7   A0A336MCG4   W8CE75   A0A084WFX4   J3JT95   U4UNE9   N6TAL2   B4PWD1   B4M1B3   A0A0Q9WDM8   Q7PPM4   A0A1Y1L1J4   A0A0M4EM12   A0A067QUU3   E0VNL1   A0A0M9A1X5   B4ND93   A0A3B0J4R2   A0A310SFI0   B0WQV6   A0A0L7R0L4   B3MVP9   A0A1A9Z4Z1   E9IX08   B4JL90   A0A232EL39   B4H7G3   A0A2P8ZDU8   A0A0J7KY97   E2A005   A0A1A9WSD6   A0A195B0N8   A0A158NKH9   A0A195FC38   A0A151IJZ9   A0A2J7QSD7   A0A151J239   A0A1A9ZHJ6   A0A1B6I023   A0A1B6L809   A0A2K5CBN2   A0A151WTX8   A0A0P5DW53   A0A2L2YAU6   A0A2K6NRE1  

PDB

1WWH     E-value=1.05656e-10,     Score=159

KEGG

101742780    K14313 nuclear pore complex protein Nup53 | (RefSeq) nucleoporin NUP53

PATHWAY

03013    RNA transport - Bombyx mori (domestic silkworm)

GO

GO:0051028   GO:0031965   GO:0005643   GO:0015031   GO:0006913   GO:0003676   GO:0003697   GO:0044613   GO:0006607   GO:0017056   GO:0044615   GO:0005543   GO:0006999   GO:0005654   GO:0005886   GO:0000166   GO:0020037   GO:0051082   GO:0015074   GO:0030429   GO:0004003   GO:0005634   GO:0006289   GO:0016286  

Subcellular location

  

Length:

292

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00247

Exp number, first 60 AAs:

0.0002

Total prob of N-in:

0.00704

outside

1  -  292

 

 

Pi

201.967067

Theta

208.977434

Tajima's D

-0.240871

CLR

0.090953

CSRT

0.298985050747463

Interpretation

Possibly Positive selection