Silkworm Genome Informatics Database

Gene

KWMTBOMO12859

Pre Gene Modal

BGIBMGA012712

Annotation

PREDICTED:_DNA-binding_protein_RFX2_[Bombyx_mori]

Location

Bomo_Chr22(-):2329832-2343541 View in EpiBrowser

Transcription factor

RFX

Location in the cell

Nuclear Reliability : 2.931

CDS

ATGGAAAGGAGGTATAGAGTTATCTTAACACGAGACGTATTTGAGGTTTTAGAAAATAATTGTTCTGAAGATAATACTGAAAGATTGGAAACTTCTGAAGTTCTACCAGATTTTGAGCATCACTGCAAGCAATTATATTACCATGATTTTGAGTGCGCCGGCGACGAGGTGCTCGTGGAATCGTCGCCGCCTCCATCGCCAGGCATGGCGGCGAGTCTAGCGGCGCCCACACAGGGCAACGGCGCCGGCAATACTTCGCCCTCGGCGGTACGCGAACTCATCGTTATACCGGAGATACCGAATTCTATACAACTACAGCATGCTATGCAACAGGTGTCGAACACTTTGGTGGAGGTGAAAGGGGATAGCTCGGGGCAGTCCAGTCCATCTGTGGACGCTCAACACACGTACATCACCGTTGCCAGCGAGGGGGGCAATGGAACCAACTACCACGTACAGTACGTCACGGAGCCACAAGAGATATACACACAAGGGAATCAAACGCATATGGAGGAGCTACGTACGTACCCGGTGTACGGAGTCGCCACCGTCGCGAACCCGGCCCCGGCCGAGGGCACGTCGTTCGACAGCAACTGGGGCGGAGCCTCCTCGGCCGAATACTCCGCTTATGGCATCGTTGTGGCCGGCGACGAGGCGGAGGCGCCGTCGTCCCCCGCGACCCCCGGCGCCCCCCGCATGCCCCCCGCCACCGTGCAGTGGCTGCTGGACCACTACGAGACCGCGGACGGCGTGTCCCTGCCCCGCTCGAGCCTGTACGCGCACTACCTGCGGCACTGCACGTCGCACCGCCTGGAGCCGGTCAACGCGGCGTCGTTCGGCAAGCTCATCCGCTCGGTGTTCGTGGGGCTGCGCACCAGGCGGCTCGGCACGCGCGGCAACTCCAAGTACCACTACTACGGCATCCGCGCCAAGCCGCACGCCGCTGCCGACACCAGCGCCGACACCGCCGCCGCCGACAAGACTGACCTCTACGACGCACAGGTATCCGTGCCTGTACTGCCTTAG

Protein

MERRYRVILTRDVFEVLENNCSEDNTERLETSEVLPDFEHHCKQLYYHDFECAGDEVLVESSPPPSPGMAASLAAPTQGNGAGNTSPSAVRELIVIPEIPNSIQLQHAMQQVSNTLVEVKGDSSGQSSPSVDAQHTYITVASEGGNGTNYHVQYVTEPQEIYTQGNQTHMEELRTYPVYGVATVANPAPAEGTSFDSNWGGASSAEYSAYGIVVAGDEAEAPSSPATPGAPRMPPATVQWLLDHYETADGVSLPRSSLYAHYLRHCTSHRLEPVNAASFGKLIRSVFVGLRTRRLGTRGNSKYHYYGIRAKPHAAADTSADTAAADKTDLYDAQVSVPVLP

Uniprot

H9JT50 A0A2H1V9E3 A0A437BA19 A0A194RCA7 A0A212EVV4 A0A194Q9G8 + More
A0A1W4WSD4

Pubmed

19121390 26354079 22118469

EMBL

BABH01030753 BABH01030754 ODYU01001347 SOQ37406.1 RSAL01000108 RVE47249.1 + More
KQ460416 KPJ14915.1 AGBW02012108 OWR45622.1 KQ459324 KPJ01640.1

Proteomes

UP000005204 UP000283053 UP000053240 UP000007151 UP000053268 UP000192223 + More

PRIDE

H9JT50

Pfam

PF02257 RFX_DNA_binding

Interpro

IPR036388   WH-like_DNA-bd_sf        + More
IPR036390   WH_DNA-bd_sf
IPR003150   DNA-bd_RFX
IPR039779   RFX-like

SUPFAM

SSF46785 SSF46785

Gene 3D

1.10.10.10

ProteinModelPortal

H9JT50 A0A2H1V9E3 A0A437BA19 A0A194RCA7 A0A212EVV4 A0A194Q9G8 + More
A0A1W4WSD4

PDB

1DP7 E-value=5.46735e-23, Score=265

KEGG

101744551 K09173 regulatory factor X 1/2/3 | (RefSeq) DNA-binding protein RFX2

GO

GO:0003677 GO:0003700 GO:0006355 GO:0020037 GO:0051082 GO:0015074 GO:0030429 GO:0004003 GO:0005634 GO:0006289 GO:0016286

PANTHER

PTHR12619

Length:

341

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00323

Exp number, first 60 AAs:

0

Total prob of N-in:

0.05671

outside

1 - 341

Pi

174.531196

Theta

159.677597

Tajima's D

0.439336

CLR

0.401014

CSRT

0.499025048747563

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics