Silkworm Genome Informatics Database

Gene

KWMTBOMO12858 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA012670

Annotation

PREDICTED:_interferon-related_developmental_regulator_2_[Bombyx_mori]

Location

Bomo_Chr22(+):2306812-2314706 View in EpiBrowser

Location in the cell

Cytoplasmic Reliability : 1.529 Nuclear Reliability : 1.311

CDS

ATGCCTAAAGGGAAAAGAAAAGGAAAATACGAGCACAGAAGAACCGAGCAAGAGTATTCCTCAGAAGAAGATGCTGGCATTGACATGACAAATGACAACTACTCTGAGACATCTGGACAGTCTGACCTCAAGAGCATCCATGATGAAGGCGAAAACGACAGTCAAGAGAAGTTGGAAGAGAAAGTGTTGGAGATCATCGACGGGCTGAGCGCTCGTGCGAACGCGGCCCGTGCGTCGGCGCTGGTGTCGCTGCGGGCCGCGCTGCAGCGCCGCTACCTCGCGCCCGTGCTCAGCAACCAGCGCGCCACGCTCGCAGACCACGTGGCGCGCGCGCTGCGCCGCGGCCGGGACGCGGAGAGACGCGCCGCCGCCGCCGTCGCGCCGCTGCTCGCCCTGCAGATCGGCGAGGAAGGCACGGAGGAGTTCATGGCAGAAGTGCGACCGGCGCTGGTGGCGGCCTGCACGGACAAGACTTCCTCGTTGGAAACCAGAGCCGAGTGTTGTTCATCTTTGGCCGCTCTATGTTATCTGCTGGAGGAAGATGTGAATGAAATTTTAGAAATCATGCAGATGTACGAGACAATCTTTAGTAGCTGTTATTTGAAGGGCGACGGCAGCGTGAAGGTGTCCGGCGCGGCCGTGGAGGAGGGCGCGTGGTGCGGCGCGGCGCTGGACGCGTGGAGCGTGCTGCTGGGCGGGCTGCCCGCCCCCGCCGCGCAGCACGCGCTGCAGGCCGCGCCGCCGGGCTGGGCGCGCCTGCCGGGCCTGCTGCGCGCCGCCGCGCTCGACGTGCGCCTGGCCGCCGGCGCCGCGCTCGCCGTCGCGCACGAGGCCGCGCCGCACCTCGCCGAGCGCCCGCACGAGCTGCTCGACCTGCTGGAGCAGCTGGCGCGCGACTCTCACAAGTACCGCGCCAAGCGCGACCGCAAGCTGCAGCGCGCCACCTTCCGCGACATCCTCAAGTACTTCGAGGAGGACGCGGCGCCCAGCGTGGCCGTGCGCGTGGGCGCCGAGACGCTGCAGTGCGACACGTGGGCGGCGCTGGGCGCCTACGCCGCGCTGGCCGCCGCGCTGGGGGCCGGCCTGCAGGCGCTGGCGCCGCACGCGCGCCCGCTCCGCGCCGCGCTCGGCCTCGACGACGTGCTGCCCGCCGACGCGCTGCCCAAGGCCAAGCTCAACAAGCTGCAGCGGCACCTGCAGAACACGGCGGCGTGCAAGGCGCGCACGCTGGCTCGCAACAAGAACCGCGACAAGCGCTCGGCCGCGCTCGCCCTGTGA

Protein

MPKGKRKGKYEHRRTEQEYSSEEDAGIDMTNDNYSETSGQSDLKSIHDEGENDSQEKLEEKVLEIIDGLSARANAARASALVSLRAALQRRYLAPVLSNQRATLADHVARALRRGRDAERRAAAAVAPLLALQIGEEGTEEFMAEVRPALVAACTDKTSSLETRAECCSSLAALCYLLEEDVNEILEIMQMYETIFSSCYLKGDGSVKVSGAAVEEGAWCGAALDAWSVLLGGLPAPAAQHALQAAPPGWARLPGLLRAAALDVRLAAGAALAVAHEAAPHLAERPHELLDLLEQLARDSHKYRAKRDRKLQRATFRDILKYFEEDAAPSVAVRVGAETLQCDTWAALGAYAALAAALGAGLQALAPHARPLRAALGLDDVLPADALPKAKLNKLQRHLQNTAACKARTLARNKNRDKRSAALAL

Uniprot

A0A1I8PQU8 B3MLB0 B4I2S2 Q7PSW0 Q9VQI5 A0A0J9QUL9 + More
A0A182U8N8 A0A182IDU5 A0A182KVQ6 A0A182US99 A0A023FAJ9 A0A182SKY9 A0A182Y507 A0A182XN51 A0A182PWY5 A0A182W4V9 A0A182LXU1 A0A182RP85 A0A2R7VXG5

Pubmed

17994087 12364791 14747013 17210077 10731132 12537568 + More
12537572 12537573 12537574 16110336 17569856 17569867 26109357 26109356 22936249 20966253 25474469 25244985

EMBL

CH902620 EDV30699.2 CH480820 EDW54067.1 AAAB01008811 EAA04959.5 + More
EGK96300.1 AE014134 AY119016 AAF51186.2 AAM50876.1 CM002910 KMY87767.1 APCN01004806 APCN01004807 GBBI01000230 JAC18482.1 AXCM01007269 KK854150 PTY12203.1

Proteomes

UP000095300 UP000007801 UP000001292 UP000007062 UP000000803 UP000075902 + More
UP000075840 UP000075882 UP000075903 UP000075901 UP000076408 UP000076407 UP000075885 UP000075920 UP000075883 UP000075900

PRIDE

Q9VQI5

Pfam

PF05004 IFRD + More
PF04836 IFRD_C

Interpro

IPR006921   Interferon-rel_develop_reg_C        + More
IPR007701   Interferon-rel_develop_reg_N
IPR039777   IFRD
IPR016024   ARM-type_fold

SUPFAM

SSF48371 SSF48371

ProteinModelPortal

A0A1I8PQU8 B3MLB0 B4I2S2 Q7PSW0 Q9VQI5 A0A0J9QUL9 + More
A0A182U8N8 A0A182IDU5 A0A182KVQ6 A0A182US99 A0A023FAJ9 A0A182SKY9 A0A182Y507 A0A182XN51 A0A182PWY5 A0A182W4V9 A0A182LXU1 A0A182RP85 A0A2R7VXG5

PDB

6MTC E-value=1.68535e-12, Score=176

KEGG

101744697 no KO assigned | (RefSeq) interferon-related developmental regulator 2

GO

GO:0005829 GO:0005488 GO:0007165 GO:0020037 GO:0051082 GO:0015074 GO:0030429 GO:0004003 GO:0005634 GO:0006289 GO:0016286

PANTHER

PTHR12354

Length:

425

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

5.01581

Exp number, first 60 AAs:

0

Total prob of N-in:

0.17568

outside

1 - 425

Pi

264.171466

Theta

199.8747

Tajima's D

1.02287

CLR

0.000922

CSRT

0.660866956652167

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics