SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO12856
Pre Gene Modal
BGIBMGA012714
Annotation
Uncharacterized_protein_OBRU01_15168_[Operophtera_brumata]
Full name
Protein amnionless      
Location in the cell
Extracellular   Reliability : 1.895
 

Sequence

CDS
ATGTACACGAGCACTAGTTTGCTGTTGTTCTCGTCAATTGTCGCTATCGCATCAGCGGCTCTAGTGAAATGGGTGCCAAATGGGAGCTTCAACTTGCCTGCCAACTTCAAAGACAAGAAACTGCCGTGTTCAAAGCAAACTGTTGTGTTTCCTGATAGAATGACAGGGTCAGTGAAAATGCAGTCTGAGGAGAAAGTGAAAGAGCTTGTCTTGCCCGTGGATGGTGAGATTATTCTCGAAACCTTGATAGTTCTCGGTGAGGATCCAACAGAAACGAATTGCACAGAAGGTTACTCGTATTATATGGATCAGTCTATGTCTTCGTGGGCCCAAGCGGGCGTTTGGAGTTCTCTTCGATTCAATGAAGCCACGCCTGATTCTGAGAAGTTGCCCTGTGAAGGTGACGATGTCGAATTCCCGAATGCCAAATACACAGTGATACTGCCGGATTCAATGCAGTCTGTGCGCAGTTTAAAAGTTAGCGGCGAGACCTACACCACCGAGTCGTTTCTAAGCCGAGCTTCGGAATCTGAGGAGGAGCAAGCTTTTCAACTAAACAGCTTATTACAAACAGGAGTTAAAGTTTCTTCAAGGACTTGTCGTCACAAAAATGGTTGTCCGTGCCAGAAGTTTCCTTTGGAAATCGACTGCTCTTTGAAATATTGTCCGCAACCAAGCTGCTTGGCGCCAATCAAGCCGGACGGTTACTGCTGTAAGCAATGCGGAGGATACATTACATTTGAAATTGACGACGACTTCGATATGATAGCCTTCAATGAGCTAGTGGATAAAACTGTTCAGAGCTACGGGGGAAATGTTGTGTATCACATCGGTTTCGCGCCGGTCAAAGATTCTAGGACACTACAGCTTGTTGTTGTGGAAAAAGGAGCGTATACCGGAACTAGTGCTGAAATAGCTAATTATATTGATAAAACTATCGAGAAACATTGGTTTAAGAGTAGCAAGCTGGCGAAGATTAGCGGAAGTCCACTTGACAAAGCAAATTTGGGAGAGAAAATGTTTTTCTCAATGTTCTTTGCGGTCGCTTTAGTAATGGGAGCCATTTACTTATATTACTATAGATTACCTAAAATAGAATTTCCAGTAATAAACAGAGGCTCTAGACGGATGTTCAGCAGATTCCAAAGAAGAACAGACAGCGTGGTGTCGTTGACCCGAAGAGATTCGACCATTATAGGGGGCGGACGAACTGCGTTTAGGAACCCGATGTATGACTCAAGAAGGGGGCGTGTTGAGGTTGCAGAGTCAGTTGTTGAAGAATAA
Protein
MYTSTSLLLFSSIVAIASAALVKWVPNGSFNLPANFKDKKLPCSKQTVVFPDRMTGSVKMQSEEKVKELVLPVDGEIILETLIVLGEDPTETNCTEGYSYYMDQSMSSWAQAGVWSSLRFNEATPDSEKLPCEGDDVEFPNAKYTVILPDSMQSVRSLKVSGETYTTESFLSRASESEEEQAFQLNSLLQTGVKVSSRTCRHKNGCPCQKFPLEIDCSLKYCPQPSCLAPIKPDGYCCKQCGGYITFEIDDDFDMIAFNELVDKTVQSYGGNVVYHIGFAPVKDSRTLQLVVVEKGAYTGTSAEIANYIDKTIEKHWFKSSKLAKISGSPLDKANLGEKMFFSMFFAVALVMGAIYLYYYRLPKIEFPVINRGSRRMFSRFQRRTDSVVSLTRRDSTIIGGGRTAFRNPMYDSRRGRVEVAESVVEE

Summary

Description
Necessary for efficient absorption of vitamin B12 (PubMed:12590260, PubMed:14576052). Required for normal CUBN-mediated protein transport in the kidney. May direct the production of trunk mesoderm during development by modulating a bone morphogenetic protein (BMP) signaling pathway in the underlying visceral endoderm (By similarity).
Necessary for efficient absorption of vitamin B12 (By similarity). Required for normal CUBN-mediated protein transport in the kidney (PubMed:15342463). May direct the production of trunk mesoderm during development by modulating a bone morphogenetic protein (BMP) signaling pathway in the underlying visceral endoderm.
Subunit
Interacts with CUBN/cubilin.
Miscellaneous
The mutations described in PubMed:12590260 all affect the N-terminus of the protein; shorter isoforms produced from alternative transcription start sites might still fulfill a role in embryogenesis. This might explain the discrepancy with the embryonic lethality of null mutants in mice.
Keywords
3D-structure   Alternative promoter usage   Cell membrane   Coated pit   Complete proteome   Developmental protein   Direct protein sequencing   Disease mutation   Endosome   Glycoprotein   Membrane   Protein transport   Reference proteome   Signal   Transmembrane   Transmembrane helix   Transport  
Feature
chain  Protein amnionless
sequence variant  In RH-MGA1; dbSNP:rs119478058.
EMBL
BABH01030763    JTDY01002845    KOB70613.1    KQ459324    KPJ01643.1    NWSH01001131    + More
PCG72462.1    ODYU01012113    SOQ58235.1    KQ460416    KPJ14917.1    GEDC01026435    JAS10863.1    CVRI01000047    CRK97728.1    GECU01018168    JAS89538.1    APCN01003309    AAAB01008986    EDO63297.1    GECZ01016002    JAS53767.1    AAMC01075696    AAMC01075697    AXCM01006675    NOWV01000139    RDD39309.1    KL669858    KFW77320.1    KL226108    KFM08653.1    KL380141    KFP86756.1    KK501363    KFP14320.1    BC074152    AAH74152.1    KL224603    KFW61522.1    PYGN01000334    PSN48330.1    NEVH01018372    PNF23689.1    MUZQ01000364    OWK52213.1    DS985260    EDV20393.1    JRES01000536    KNC30327.1    KL218472    KFP05629.1    JXUM01060631    KQ562111    KXJ76667.1    KL460545    KFV12466.1    AHZZ02032720    KK555391    KFV97869.1    CH477198    EAT48283.1    AXCN02001025    KL447555    KFO74853.1    KZ507224    PKU37259.1    KL516659    KFO88240.1    KL410729    KFQ98952.1    AABR07065586    AABR07065587    CH474034    EDL97480.1    ADON01080849    ADON01080850    ADON01080851    ADON01080852    ADON01080853    ADON01080854    ADON01080855    GAPW01001369    JAC12229.1    KK454952    KFQ75776.1    LWLT01000019    AQIB01045002    AF328788    AL117209    AY358468    KK718430    KFO56161.1    QUSF01000004    RLW10483.1    KL873269    KGL98111.1    RQTK01000015    RUS91274.1    AF320615    AF320616    AF320619    BC087954    ABLF02031630    QRBI01000152    RMB98706.1    KK521562    KFP66607.1    KB743197    EOB00435.1    AJFE02020022    AJFE02020023    KK681622    KFQ12829.1    AACZ04029300    GCES01144766    JAQ41556.1    DS232318    EDS39922.1    AGTO01000282    CCAG010003108    NBAG03000028    PNI97180.1    KL297664    KFP50694.1    NDHI03003534    PNJ26201.1    GFDL01005410    JAV29635.1    BC102126    AAI02127.1   
Pfam
PF14828   Amnionless        + More
PF04750   Far-17a_AIG1
Interpro
IPR026112   AMN        + More
IPR006838   Far-17a_AIG1       
PDB
6GJE     E-value=1.62208e-22,     Score=262

Ontologies

Topology

Subcellular location
Apical cell membrane  
Cell membrane  
Endosome  
Membrane  
Coated pit  
SignalP
Position:   1 - 19,         Likelihood:  0.887010
 
 
Length:
427
Number of predicted TMHs:
2
Exp number of AAs in TMHs:
36.85846
Exp number, first 60 AAs:
15.41181
Total prob of N-in:
0.73366
POSSIBLE N-term signal
sequence
inside
1  -  6
TMhelix
7  -  26
outside
27  -  339
TMhelix
340  -  362
inside
363  -  427
 
 

Population Genetic Test Statistics

Pi
129.025939
Theta
156.03929
Tajima's D
-0.274236
CLR
38.735752
CSRT
0.296235188240588
Interpretation
Uncertain
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