Gene

KWMTBOMO12852

Pre Gene Modal

BGIBMGA010729

Annotation

retroelement_polyprotein_[Glyptapanteles_flavicoxis]

Location

Bomo_Chr22(-):1674744-1678658      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.524

CDS

ATGGGTGACTGTGACACTGAATCTCGCTATTGTACTACTTTGACAGTTGAGTTTCCCGAAATTACGCTAGAAATAGACTTTCAAATTGTTAGTGACAAGTTCATGAATACCCCAGTCATAATCGGTACTGACGTTTTGAATCGGGAAGGTGTCACGTATATTAGGAAAAAGGGCATACAGCGCTTAACTCGGGTAGAAAAGGTTTTTACTGCGGAGACAACTGAACTTAATTCAATCCGTACCGTGAATACTTCATTAACAGGTGAAGAAAAAAATAAATTATTAGCTTTGGTACGAAAATTTTCAAAATACCTTATAACTGGTACCGCGGCCAGTACTGTTACAACTGGATCCATGCAAATTCGACTCAGCAATGAAACTCCTATTGTTTACAGACCTTACAAATTATCATTTAGCGAAAAACTTCGCGTTAGAGAAATTATTAAGGATCTTCTTGATAAAGGTGTGATTAGGGAGTCTGAATCGGAGTTCTCGAGTCCGATATTGCTAGTTAAGAAAAAGGACGGCAGTGACAGGATGTGCGTGGACTTTCGGGCTCTTAATGCGAATACTGTGAAGGATCGCTATCCATTGCCGTTAATAGACGATCACATTGACCGGTTAGGTAGCGCAAAATATTTTACAAGCCTCGATATGGCCACTGGTTTCCACCAGATTCCTTTAGCAAACGACTCCATTCACAAAACCGGCTTTGTGACACCCGAAGGTCATTTTGAATACCTTAAAATGCCCTACGGGTTAGCTAATGCCCCGGTTGTTTATCAACGTATTATAACTAATACTCTGAAAGCCTTTAGTGAGACAGGGAGGGCTTTAATCTATATCGATGATGTTTTAATACCTAGTCAGACCATTGATGAAGGCCTAAATACTCTGCGTGAAATCTTTGAAACACTAACTAAGGCGGGCTTCTCAATTAATTTAAAAAAATGCAAGTTTCTTGCTAACGAAATTGAATATTTGGGCAGAACTATCAGCAATGGTCAGGTTAGGCCGAGTACGTATAAAGTAGAAGCATTGACAAAAGCCCCGAAGCCTGGTAATGTTAAACAAGCTAGACAATTTTTAGGTCTAGCGGGTTATTTTCGGCGCTATATTCCTGCATATTCGTTGCAGACAGCTTGTATTTCTAATCTGTTTCGTAAAGGTGTTGAGTTTAAATGGGGTGATGAACAGGAACAAGTACGCCAGTATATAATTACGCGTTTAACCAGTGAACCTGTCCTCAATATATTTAATCCATCATTATTAACAGAAGTACACACTGATGCTTCTTCTCGAGGGTATGGAGCTGTTTTACTTCAGACTCATGGGAATAATAATAAACGCGTGGTGGGATATTTTAGTAAAGTTACCCAAGGCGCCGAACCACGCTATCACTCCTATGAGCTGGAGACACTCGCTGTGGTCAAGGCTCTGCAGCATTTCAGGCACTACCTCATAGGTATACATTTCAAGGTAGTTACAGACTGCAACGCTTTGAAGCTTACCCAACGTAAAAAAGATTTACTACCGAGAGTCGCTCGGTGGTGGATCTACTTACAAGATTATGATTTTTCGTTAGAGTATCGTAAGGGCGCTGTGCTATCTCATGCCGACTATCTAAGTCGTAATCCTATAAATGTTTGTGAAATTGGTAGACCGCATAACTGGGCACAGATAGCACAGAGTGCTGATGAAGAAACTCGGAATTTAATACAAAAGTTACAAAACGGTGAATTAGATGAGACACGCTATGTAACTAAAAATGATGTTCTTTATTATAAATTTGATTCTGTTGGCCAACCTAGTAAATTATTATGTTATATTCCAAGAGGACATCGCCTCAGTTTGTTACGAATCTTTCATGATGAGCATCATCATATTGGAGTAGATAAGACGCTTGATCTAATATTAAACCATTTTTGGTTTCCTAGTCTAAGACAATTTGTTCGTAAATATGTACGCCATTGTATAGTATGTCTTTCACACAAAAAAATACCACGTCAACCCTTGCAGCCGATCGAGTCGTGGAAGAAACCGGACGTACCCTTTGACACGGTACATAGTGATGTCTTGGGTCCTCTTCCCGAATCGAACGGTTACAAATTTGTTGTCTTGATAATTGACGCTTATAGTAAGTTCTGTCTACTAAATCCTATGCGTAAGCAGGATGCAACAGAGTTAAAATTAGTATTTGAAAACGCTGTATCTTTATTTGGTGCACCTAGGCAGATTGTAACCGATAGGGGTAGAATGTACGAAAATAGATCATTTAGACAATGGGTATCAGACGTAGGTAGTAATTTATTCTTTATAACGCCAGAGATGCACCAGAGTAACGGTCAGGCTGAGAGATATTGCAGAACAGTTCTTAATATGATTCGTGTGGAGGTAAATTTCAGAAACGAAAATTGGTCAGAAGTTTTGTGGAAACTGCAGCTCACCCTGAACATTACGAAACAAAAGTCCACTCAATATTCACCTTTATATTTGTTAATTGGTAGCGATGCTGTGACGCCCGTCATTCGTTCCGTTGTACGCGATGTGGCTCTAGAAGGAACAAGTGCCAACAGAGAAACCTTACGCGAGCTTGCCCGACAAAGAGCTTCTCAACTGCTGGACAAAAACCGAAAACAGCAGGACACTCGAGTAAATGAACGGCGCAAACCCCCGCGTACTTTCCATGAAAACGACGTGGTCTTCGTGCATAAGAATAGCCAATCTGTTGGAAAGCTGGATTCTGGTATGCGTGGCCCGTACAAAATAGTGCGTGCGCTGCCACATGGACGTTATGAACTGAAGCTTCTTTCTGGCTCACTTGGGAAGACCACGAAAGCTGCTGCCGAATTTATAAGTGATGAGAATAGCTCTGAGGAAGGTATTGTTGCCGGTCCATCACACCACCATGACGACATAGTACCTCTAGACGGACCTATTAATGCGGGCGAGGACGCTCCGCCGTCAGGAGAGGCCGTGTTAGAAGATGATGATGACATTGGAGGCGTGGCCTAA

Protein

MGDCDTESRYCTTLTVEFPEITLEIDFQIVSDKFMNTPVIIGTDVLNREGVTYIRKKGIQRLTRVEKVFTAETTELNSIRTVNTSLTGEEKNKLLALVRKFSKYLITGTAASTVTTGSMQIRLSNETPIVYRPYKLSFSEKLRVREIIKDLLDKGVIRESESEFSSPILLVKKKDGSDRMCVDFRALNANTVKDRYPLPLIDDHIDRLGSAKYFTSLDMATGFHQIPLANDSIHKTGFVTPEGHFEYLKMPYGLANAPVVYQRIITNTLKAFSETGRALIYIDDVLIPSQTIDEGLNTLREIFETLTKAGFSINLKKCKFLANEIEYLGRTISNGQVRPSTYKVEALTKAPKPGNVKQARQFLGLAGYFRRYIPAYSLQTACISNLFRKGVEFKWGDEQEQVRQYIITRLTSEPVLNIFNPSLLTEVHTDASSRGYGAVLLQTHGNNNKRVVGYFSKVTQGAEPRYHSYELETLAVVKALQHFRHYLIGIHFKVVTDCNALKLTQRKKDLLPRVARWWIYLQDYDFSLEYRKGAVLSHADYLSRNPINVCEIGRPHNWAQIAQSADEETRNLIQKLQNGELDETRYVTKNDVLYYKFDSVGQPSKLLCYIPRGHRLSLLRIFHDEHHHIGVDKTLDLILNHFWFPSLRQFVRKYVRHCIVCLSHKKIPRQPLQPIESWKKPDVPFDTVHSDVLGPLPESNGYKFVVLIIDAYSKFCLLNPMRKQDATELKLVFENAVSLFGAPRQIVTDRGRMYENRSFRQWVSDVGSNLFFITPEMHQSNGQAERYCRTVLNMIRVEVNFRNENWSEVLWKLQLTLNITKQKSTQYSPLYLLIGSDAVTPVIRSVVRDVALEGTSANRETLRELARQRASQLLDKNRKQQDTRVNERRKPPRTFHENDVVFVHKNSQSVGKLDSGMRGPYKIVRALPHGRYELKLLSGSLGKTTKAAAEFISDENSSEEGIVAGPSHHHDDIVPLDGPINAGEDAPPSGEAVLEDDDDIGGVA

Uniprot

A0A437AUZ6   A0A0A9X1Z8   A0A146M2J2   B7S8P8   A0A0J7KEC9   A0A0C9RXL6   + More
A0A0A9WJJ8   A0A0A9Z954   A0A139WJA1   A0A139WIQ0   A0A3S2L135   D2A5M1   A0A194R1L3   A0A1Y1NG42   A0A1Y1KFN9   A0A1Y1KFM9   A0A1Y1NAV9   J9JJ45   A0A147BLC5   A0A0J7NF11   A0A2S2P032   A0A0J7KLK4   A0A1Y1MFA9   A0A139WIB9   A0A0J7K9X8   A0A2S2PGQ9   X1X5H2   X1WPP0   A0A2S2NFQ4   A0A2H8TRV6   J9LBS9   X1XM84   A0A1W7R6G2   A0A0J7K890   A0A1Y1MFE0   W8C8Q1   A0A2S2NKJ2   X1XD76   X1XU14   Q24310   W8B0V9   A0A2L2Y402   A0A2L2Y1I8   A0A2L2Y1Z9   A0A034WRX5   A0A1Y1NEJ5   J9JQ65   A0A0A1XB16   A0A0A1XFE9   A0A023EZG2   A0A034VLR3   A0A023EYH9   J9JZ77   A0A2S2PFS2   A0A2S2QVZ0   A0A023EY26   A0A1W7R6L8   A0A034VPR8   A0A034VKV9   W8APB2   A0A224XHR1   A0A1W7R6R7   A0A2S2QIS3   A0A034W795   X1XU22   A0A1Y1LN89   A0A0A1WKC8   A0A1W7R6G1   A0A2S2R3T0   A0A139WCG2   A0A139WCC5   A0A2A4J7U9   T1PMR9   X1X261   A0A2S2PMX3   A0A1W7R6H1   Q94885   A0A1Z5L674   A0A147BTY1   L7LV55   A0A131XQ77   A0A034VAM6   A0A2M4AI73   A0A023F013   A0A023EYF0   A0A0A9YEP8   A0A2M4AEU2   L7MCS8   L7LY95   J9K544  

Pubmed

25401762    26823975    18362917    19820115    26354079    28004739    + More
29652888    24495485    2464689    26561354    25348373    25830018    25474469    3007285    8535278    28528879    25576852   

EMBL

RSAL01000399    RVE41947.1    GBHO01030786    JAG12818.1    GDHC01004980    JAQ13649.1    + More
EF710649    ACE75273.1    LBMM01008871    KMQ88569.1    GBYB01013920    JAG83687.1    GBHO01036023    GBHO01032007    JAG07581.1    JAG11597.1    GBHO01040010    GBHO01001812    JAG03594.1    JAG41792.1    KQ971338    KYB27887.1    KYB27888.1    RSAL01000274    RVE43148.1    KQ971345    EFA05054.2    KQ460883    KPJ11409.1    GEZM01007614    GEZM01007613    GEZM01007612    JAV95056.1    GEZM01089268    GEZM01089261    JAV57577.1    GEZM01089269    GEZM01089265    JAV57567.1    GEZM01007616    GEZM01007615    GEZM01007611    JAV95051.1    ABLF02008401    ABLF02008404    GEGO01004299    JAR91105.1    LBMM01005919    KMQ91095.1    GGMR01009949    MBY22568.1    KMQ91096.1    GEZM01033083    JAV84424.1    KQ971339    KYB27733.1    LBMM01010976    KMQ87102.1    GGMR01016004    MBY28623.1    ABLF02004401    ABLF02013544    ABLF02013550    ABLF02033943    ABLF02042737    GGMR01003388    MBY16007.1    GFXV01005120    MBW16925.1    ABLF02041876    ABLF02004526    ABLF02054969    GEHC01000888    JAV46757.1    LBMM01011782    KMQ86633.1    GEZM01034557    JAV83728.1    GAMC01007326    JAB99229.1    GGMR01005091    MBY17710.1    ABLF02022032    ABLF02003120    ABLF02004015    ABLF02057179    ABLF02066208    X14037    CAA32198.1    GAMC01015907    JAB90648.1    IAAA01004057    LAA02040.1    IAAA01004058    LAA02042.1    IAAA01004056    LAA02037.1    GAKP01001563    JAC57389.1    GEZM01005427    JAV96179.1    ABLF02005846    GBXI01005773    JAD08519.1    GBXI01004632    JAD09660.1    GBBI01004551    JAC14161.1    GAKP01016237    JAC42715.1    GBBI01004550    JAC14162.1    ABLF02014660    ABLF02042774    GGMR01015682    MBY28301.1    GGMS01012726    MBY81929.1    GBBI01004477    JAC14235.1    GEHC01000930    JAV46715.1    GAKP01014483    JAC44469.1    GAKP01016235    JAC42717.1    GAMC01020207    JAB86348.1    GFTR01008753    JAW07673.1    GEHC01000880    JAV46765.1    GGMS01008442    MBY77645.1    GAKP01008942    JAC50010.1    ABLF02017401    GEZM01051217    GEZM01051215    JAV75083.1    GBXI01015151    JAC99140.1    GEHC01000891    JAV46754.1    GGMS01015422    MBY84625.1    KQ971370    KYB25610.1    KYB25609.1    NWSH01002797    PCG67520.1    KA649989    AFP64618.1    ABLF02005127    ABLF02005129    ABLF02007401    GGMR01018192    MBY30811.1    GEHC01000876    JAV46769.1    X95908    CAA65152.1    GFJQ02004121    JAW02849.1    GEGO01001472    JAR93932.1    GACK01009547    JAA55487.1    GEFM01006999    JAP68797.1    GAKP01019383    JAC39569.1    GGFK01007168    MBW40489.1    GBBI01004613    JAC14099.1    GBBI01004549    JAC14163.1    GBHO01015604    JAG28000.1    GGFK01005990    MBW39311.1    GACK01004001    JAA61033.1    GACK01009195    JAA55839.1    ABLF02023666   

Proteomes

UP000283053    UP000036403    UP000007266    UP000053240    UP000007819    UP000218220    + More

PRIDE

Q24310    Q94885    L7MCS8   

Pfam

PF17919   RT_RNaseH_2        + More
PF17921   Integrase_H2C2
PF00665   rve
PF00078   RVT_1
PF00077   RVP
PF00098   zf-CCHC
PF17917   RT_RNaseH
PF14392   zf-CCHC_4
PF13873   Myb_DNA-bind_5
PF02037   SAP
PF03732   Retrotrans_gag
PF16064   DUF4806
PF12384   Peptidase_A2B
PF09668   Asp_protease
PF07530   PRE_C2HC
PF03273   Baculo_gp64

Interpro

IPR000477   RT_dom        + More
IPR041588   Integrase_H2C2       
IPR036397   RNaseH_sf       
IPR012337   RNaseH-like_sf       
IPR001584   Integrase_cat-core       
IPR041577   RT_RNaseH_2       
IPR001878   Znf_CCHC       
IPR001969   Aspartic_peptidase_AS       
IPR001995   Peptidase_A2_cat       
IPR018061   Retropepsins       
IPR021109   Peptidase_aspartic_dom_sf       
IPR036875   Znf_CCHC_sf       
IPR041373   RT_RNaseH       
IPR034122   Retropepsin-like_bacterial       
IPR025836   Zn_knuckle_CX2CX4HX4C       
IPR028002   Myb_DNA-bind_5       
IPR036361   SAP_dom_sf       
IPR003034   SAP_dom       
IPR005162   Retrotrans_gag_dom       
IPR032071   DUF4806       
IPR024650   Peptidase_A2B       
IPR019103   Peptidase_aspartic_DDI1-type       
IPR004955   Baculovirus_Gp64       
IPR006579   Pre_C2HC_dom       
IPR011764   Biotin_carboxylation_dom       

SUPFAM

SSF53098   SSF53098        + More
SSF50630   SSF50630       
SSF57756   SSF57756       
SSF68906   SSF68906       

Gene 3D

3.30.420.10     2.40.70.10     1.10.720.30    

CDD

cd05483  retropepsin_like_bacteria

ProteinModelPortal

A0A437AUZ6   A0A0A9X1Z8   A0A146M2J2   B7S8P8   A0A0J7KEC9   A0A0C9RXL6   + More
A0A0A9WJJ8   A0A0A9Z954   A0A139WJA1   A0A139WIQ0   A0A3S2L135   D2A5M1   A0A194R1L3   A0A1Y1NG42   A0A1Y1KFN9   A0A1Y1KFM9   A0A1Y1NAV9   J9JJ45   A0A147BLC5   A0A0J7NF11   A0A2S2P032   A0A0J7KLK4   A0A1Y1MFA9   A0A139WIB9   A0A0J7K9X8   A0A2S2PGQ9   X1X5H2   X1WPP0   A0A2S2NFQ4   A0A2H8TRV6   J9LBS9   X1XM84   A0A1W7R6G2   A0A0J7K890   A0A1Y1MFE0   W8C8Q1   A0A2S2NKJ2   X1XD76   X1XU14   Q24310   W8B0V9   A0A2L2Y402   A0A2L2Y1I8   A0A2L2Y1Z9   A0A034WRX5   A0A1Y1NEJ5   J9JQ65   A0A0A1XB16   A0A0A1XFE9   A0A023EZG2   A0A034VLR3   A0A023EYH9   J9JZ77   A0A2S2PFS2   A0A2S2QVZ0   A0A023EY26   A0A1W7R6L8   A0A034VPR8   A0A034VKV9   W8APB2   A0A224XHR1   A0A1W7R6R7   A0A2S2QIS3   A0A034W795   X1XU22   A0A1Y1LN89   A0A0A1WKC8   A0A1W7R6G1   A0A2S2R3T0   A0A139WCG2   A0A139WCC5   A0A2A4J7U9   T1PMR9   X1X261   A0A2S2PMX3   A0A1W7R6H1   Q94885   A0A1Z5L674   A0A147BTY1   L7LV55   A0A131XQ77   A0A034VAM6   A0A2M4AI73   A0A023F013   A0A023EYF0   A0A0A9YEP8   A0A2M4AEU2   L7MCS8   L7LY95   J9K544  

PDB

4OL8     E-value=2.37135e-77,     Score=739

KEGG

101738461    no KO assigned | (RefSeq) uncharacterized LOC101738461

GO

GO:0015074   GO:0003676   GO:0004190   GO:0008270   GO:0005634   GO:0008233   GO:0003964   GO:0019048   GO:0020037   GO:0051082   GO:0030429   GO:0004003   GO:0006289   GO:0016286  

Length:

1004

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.253340000000001

Exp number, first 60 AAs:

0.00117

Total prob of N-in:

0.01195

outside

1  -  1004

 

 

Pi

2.530243

Theta

157.463951

Tajima's D

0

CLR

0

CSRT

0.371181440927954

Interpretation

Uncertain