Silkworm Genome Informatics Database

Gene

KWMTBOMO12848

Annotation

TRAS3_protein_[Operophtera_brumata]

Location

Bomo_Chr22(-):1575660-1577488 View in EpiBrowser

Location in the cell

Mitochondrial Reliability : 2.753

CDS

ATGAGTCATCCCGAGGGTCATGGACCAAAAACCACAGCCAGAGCTTCCACAGTCTCTCCTAAACCCAAACCGAAACAAGGCGACGCGAAAAAGTTTTCGGTGCCCCCCCAAACGATTTCGGTTAGGAGGAGCATCGGGGAATGGGAGAAGGCTTCATATACATGCAAATTGGACGAAGCAACAGCATGCGCGGGCAGAGCAAAACAACAGCTCAACGCCGCACGCAACTTGAAAGGGGAGTTAAAAATTGAAGCCTTTAAAATGCTGGATAGGTTACTCGAAATTGTGAAAAAGTTGGAAATGCCCTCGAAAACAAAGGTAGAGAAGGAGGTCATGAAGCAGATGTACCGCGAAAATAGCAAGACAGAAATGGGCACGAGCAACCTGAAAAATATTATTGAGGAGCATAGTAAGGTTTTGGGAGAGACTGTGAAAGAAATGGACCGACTACGCACGGTTATTAGGAGACACGAGGAGAAAATGGATGACACGGCACAAAACGCCGAAAAACGAGATGGGGGACATAGCGGTGGAGAGTTTCTGGCGGAAATCCGTGAGCTCAAGCGACTCACACAAGAGACCCGGGTACGGACCGACGAGGCGCAGGGGGTAATTCCCTCGTACGCGGAGGTCCTGTCTCGGCCACCAGCCGCTAGAGTGGACAAGCCGAAGTTCTCCGTCATCGTGGGTTCAAAAAACGTCATCGATACTAGTGCTGATGTCATAGAAAAGCTGAGAGGGGCGTTAGATGCACGGCGCAGCGGTCTAAAGATAGAGCGTCTCCGTAGGGATGGCTGA

Protein

MSHPEGHGPKTTARASTVSPKPKPKQGDAKKFSVPPQTISVRRSIGEWEKASYTCKLDEATACAGRAKQQLNAARNLKGELKIEAFKMLDRLLEIVKKLEMPSKTKVEKEVMKQMYRENSKTEMGTSNLKNIIEEHSKVLGETVKEMDRLRTVIRRHEEKMDDTAQNAEKRDGGHSGGEFLAEIRELKRLTQETRVRTDEAQGVIPSYAEVLSRPPAARVDKPKFSVIVGSKNVIDTSADVIEKLRGALDARRSGLKIERLRRDG

Uniprot

A0A2A4IZ95 Q9BLI5 A0A212EIV6

Pubmed

11319268 22118469

EMBL

NWSH01005109 PCG64433.1 AB046668 BAB21511.1 AGBW02014565 OWR41401.1 + More

Proteomes

UP000218220 UP000007151

PRIDE

Q9BLI5

Pfam

PF14529   Exo_endo_phos_2        + More
PF00075   RNase_H
PF00078   RVT_1

Interpro

IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR012337   RNaseH-like_sf
IPR005135   Endo/exonuclease/phosphatase
IPR000477   RT_dom
IPR036397   RNaseH_sf
IPR002156   RNaseH_domain

SUPFAM

SSF56219 SSF56219 + More
SSF53098 SSF53098

Gene 3D

3.30.420.10 3.60.10.10

ProteinModelPortal

A0A2A4IZ95 Q9BLI5 A0A212EIV6

KEGG

NA

GO

GO:0004523 GO:0003676

Length:

265

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01708

outside

1 - 265

Pi

124.036086

Theta

131.260079

Tajima's D

-0.322073

CLR

234.71289

CSRT

0.288335583220839

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree