SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO12846
Pre Gene Modal
BGIBMGA012754
Annotation
PREDICTED:_palmitoyltransferase_ZDHHC18_[Amyelois_transitella]
Full name
Palmitoyltransferase       + More
Palmitoyltransferase app      
Alternative Name
Protein approximated
Location in the cell
PlasmaMembrane   Reliability : 3.874
 

Sequence

CDS
ATGGCGTCGCGGCGCGTGACGCGCAAGTGGGAAGTGTTCGCGGGGCGAAACCGGTTCTGGTGCGACGGGCGGCTCATGACTGCACCGCACCCCGGCGTCTTCCTGCTCACACTGGCGCTCATCTGCGGCACGTGCGCGCTGCACTTCGCGTTCGACTGTCCCTTCCTGGCCGTGCGCGTGTCGGCCGCCGTGCCCGCCGTGGGCGCCGCGCTGTTCGTGCTGACGCTGGCGGCGCTGCTGCGGACCGCGCTGTCCGACCCGGGCATCATCCCGCGCGCGGCCACGGCCGAGGCGGCGGCCCTGGAGGCTGCCGAAGCGGGTCGGCCTCCGCCGCGCGCGCGGGAGGTGCTCGTGCGAGGCCGCCCCGTCAAGCTCAAGTACTGCTTCACCTGTAAGATGTTCCGACCTCCGCGCGCGTCGCACTGCTCACTCTGCGACAACTGCGTGGACCGGTTCGACCATCACTGTCCGTGGGTGGGGAACTGCGTGGGCAAGCGCAACTACCGGTCGTTCTACACGTTCGTGGTGTCGCTGTCGTTCCTGGCGGTGTTCGTGTTCGCGTGCGCCGTGACGCACCTGGCGCTGGCGGCGCGGGGCGCGGGCGTGGCGGCGGCGCTGCACGCGTCCCCCGCCTCGGCGCTGGTGGCCGCCGTGTGCTTCCTGTCCGTGTGGTCCGTGCTGGGGCTCGCCGGCTTCCACACGTACCTCGCCTCCACCGACCAGACCACCAACGAGGACATTAAAGGTTCATTTTCGAGTCGGCGCGGCGTGTCCAACCCGAACCCGTACTCGCGAGGTAACGCCTGCGCCAACTGCTGGTACGTGCTGTGCGGTCCGCTGGCGCCCAGCCTCATCGACCGGCGCGGCGTGTTCACGATCGACGTGAAGGACGAGCTGCCGCCGAGCTTCGTCCGCGCGCTGGGAGCCGTGACCGTGGCCCCGGCGCCGGGCGGCGGCGCGGAGCCGGCCCGCCACGCCTACATGAACAGGTCGCTGGACGTGGAGCCGGCGGGGGCGGGCGCGGGGGCGGGGGCGGGCGCGGGGGCGGGGGGCGCGGTGGCGCTGAGCGCGTCCCGGCTGCGGCTGCTGCACGACACGACCATGATCGACGCGGCGCTGGACCTGGACGAGCCGGAGCCGCCGCCGCACCTGTCCGTGGCGCTGCCGCCCCTCCCCCCGCACCCGCTCACCGACTGCAACTGA
Protein
MASRRVTRKWEVFAGRNRFWCDGRLMTAPHPGVFLLTLALICGTCALHFAFDCPFLAVRVSAAVPAVGAALFVLTLAALLRTALSDPGIIPRAATAEAAALEAAEAGRPPPRAREVLVRGRPVKLKYCFTCKMFRPPRASHCSLCDNCVDRFDHHCPWVGNCVGKRNYRSFYTFVVSLSFLAVFVFACAVTHLALAARGAGVAAALHASPASALVAAVCFLSVWSVLGLAGFHTYLASTDQTTNEDIKGSFSSRRGVSNPNPYSRGNACANCWYVLCGPLAPSLIDRRGVFTIDVKDELPPSFVRALGAVTVAPAPGGGAEPARHAYMNRSLDVEPAGAGAGAGAGAGAGGAVALSASRLRLLHDTTMIDAALDLDEPEPPPHLSVALPPLPPHPLTDCN

Summary

Description
Palmitoylates Dlish which is required for the apical cell cortex localization, total cellular level and full activity of dachs.
Catalytic Activity
hexadecanoyl-CoA + L-cysteinyl-[protein] = CoA + S-hexadecanoyl-L-cysteinyl-[protein]
Subunit
Interacts with Dlish (via N-terminus including SH3 domain 1); this leads to palmitoylation of Dlish by app. Interacts with ft; this is likely to interfere with the interaction between app and Dlish, reducing the ability of app to palmitoylate Dlish and tether it to the apical cell cortex.
Similarity
Belongs to the DHHC palmitoyltransferase family.
Belongs to the DHHC palmitoyltransferase family. ERF2/ZDHHC9 subfamily.
Belongs to the actin family.
Keywords
Acyltransferase   Alternative splicing   Cell membrane   Complete proteome   Endoplasmic reticulum   Lipoprotein   Membrane   Palmitate   Reference proteome   Transferase   Transmembrane   Transmembrane helix  
Feature
chain  Palmitoyltransferase app
splice variant  In isoform S.
EC Number
2.3.1.225
EMBL
ODYU01000773    SOQ36074.1    RSAL01000015    RVE53071.1    AGBW02008428    OWR53424.1    + More
KQ971343    EFA04303.2    LJIG01016404    KRT80702.1    GAMD01001730    JAA99860.1    CH902618    KPU77652.1    CH379069    KRT07714.1    CM000159    KRK01733.1    CH954178    KQS43836.1    AE014296    BT030308    ABN49447.1    CM002912    KMY99200.1    BT012335    AAS77460.1    JXUM01011106    JXUM01011107    JXUM01011108    JXUM01011109    JXUM01011110    JXUM01011111    JXUM01011112    JXUM01011113    JXUM01011114    JXUM01011115    GDHF01026100    GDHF01017497    GDHF01016168    JAI26214.1    JAI34817.1    JAI36146.1    GFDL01001375    JAV33670.1    GEZM01062665    JAV69551.1    GFDL01001356    JAV33689.1    GGFM01003556    MBW24307.1    CVRI01000063    CRL04718.1    GFDL01001353    JAV33692.1    GFDL01001316    JAV33729.1    GFDL01001346    JAV33699.1    GFDL01001339    JAV33706.1    GFDL01001374    JAV33671.1    KMY99199.1    GFDL01001387    JAV33658.1    GFDL01001359    JAV33686.1    GFDL01001421    JAV33624.1    GGFK01007931    MBW41252.1    GAMD01001727    JAA99863.1    GGFM01002600    MBW23351.1    GEZM01062663    JAV69553.1    GBXI01001662    JAD12630.1    GBXI01012779    JAD01513.1    GAKP01008005    GAKP01008004    GAKP01008003    GAKP01008002    JAC50948.1    KPU77654.1    KQ414755    KOC61792.1    GAMC01016090    JAB90465.1    CH963847    EDW72818.2    KK853114    KDR11201.1    CH940647    KRF84264.1    OUUW01000002    SPP76282.1    KRK01732.1    CH477216    EAT47524.1    KQS43837.1    CH916366    EDV96115.1    GGFL01003910    MBW68088.1    GAPW01000328    JAC13270.1    GBXI01017124    GBXI01004065    JAC97167.1    JAD10227.1    KMY99201.1    EAL30867.3    EDV38816.2    GGFJ01002227    MBW51368.1    GBXI01013028    JAD01264.1    DS235882    EEB20091.1    GDHF01019258    GDHF01005678    JAI33056.1    JAI46636.1    GDHF01032828    GDHF01024048    JAI19486.1    JAI28266.1    GGFJ01002218    MBW51359.1    EDW69248.1    KRF84263.1    CM000363    EDX10208.1    KMY99197.1    AAF49939.3    CH933809    EDW18005.2    SPP76283.1    EDV51543.2    EDW94277.2    JR037217    AEY57643.1    GL448819    EFN83760.1    QOIP01000009    RLU19022.1    KK107320    EZA52782.1    ATLV01021831    KE525324    KFB46909.1    FJ821035    ACN94781.1    APCN01002922    APCN01002923    AAAB01008900    EGK97214.1    GEDC01021894    JAS15404.1    JRES01001294    KNC23857.1    KQ982779    KYQ50736.1    GL888565    EGI59495.1    CH480815    EDW41237.1    UFQS01000784    UFQT01000784    SSX06868.1    SSX27212.1    GL437711    EFN70032.1    KQ976932    KYN07042.1    JR037216    AEY57642.1    KZ288263    PBC30328.1    ADMH02000391    ETN66738.1    AXCN02000912   
Pfam
PF01529   DHHC        + More
PF00022   Actin
Interpro
IPR001594   Palmitoyltrfase_DHHC        + More
IPR004000   Actin       
IPR020902   Actin/actin-like_CS       
IPR015623   Arp3       
PDB
6BML     E-value=1.41828e-12,     Score=176

Ontologies

Topology

Subcellular location
Endoplasmic reticulum membrane  
Apical cell membrane  
Length:
400
Number of predicted TMHs:
4
Exp number of AAs in TMHs:
96.64138
Exp number, first 60 AAs:
22.81608
Total prob of N-in:
0.99883
POSSIBLE N-term signal
sequence
inside
1  -  31
TMhelix
32  -  51
outside
52  -  60
TMhelix
61  -  80
inside
81  -  173
TMhelix
174  -  196
outside
197  -  210
TMhelix
211  -  233
inside
234  -  400
 
 

Population Genetic Test Statistics

Pi
219.556349
Theta
185.014064
Tajima's D
0.688159
CLR
0.002844
CSRT
0.569821508924554
Interpretation
Uncertain
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