Gene

KWMTBOMO12842

Pre Gene Modal

BGIBMGA012721

Annotation

PREDICTED:_protein_vestigial_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr22(-):1483674-1492318      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 1.255 Nuclear   Reliability : 1.735

CDS

ATGGCGGTGAGCTGCCCCGAGGTGATGTACGGCGCCTACTATCCCTACCTGTACGGCCGCGGAGCCGCGCGCTCCTTCCACCACGCGCCGCACTTCCAGTACGATCGGTTGAACGTGCAGAGCGGCGGCGTCAATGCGGGCAGCAGCGAGGCGTTCGTGTCGGGGGCGCAGTCCCCGGGCTCTCCGCCGCACGCGCTCCCGGCGCACCGTCTGCGCACCAAGGAGGAGGATCTCTCTGCACACGGCCGAGCCAGCGCTGACGGAGGCGGTTCGTCCGAGTCGGAGGGCGAGTGCGGCGGCGCGGGTCCGCGAGCGCGCGCGCAGTACGTCAGCGCCAACTGCGTCGTGTTCACGCACTACTCCGGGGACGTCGCCGCGGTCGTCGACGAGCACTTCGCCAGGGCGCTCTCGCTCGACAAGACTAAAGGTCAGGGTGGGTCAGCTGGTATACTCGTATGA

Protein

MAVSCPEVMYGAYYPYLYGRGAARSFHHAPHFQYDRLNVQSGGVNAGSSEAFVSGAQSPGSPPHALPAHRLRTKEEDLSAHGRASADGGGSSESEGECGGAGPRARAQYVSANCVVFTHYSGDVAAVVDEHFARALSLDKTKGQGGSAGILV

Uniprot

A0A2W1BSE0   A0A2A4K2F4   H9JT59   A0A437AYH8   A0A1B6HHJ9   A0A1B6F3M1   + More
A0A1S3DF06   A0A1J1IJG6   A0A2S2PWV4   A0A1Y1MB82   A0A2S2R2B8   J9L3M9   A0A2H8TZQ9   A0A1B6BYE8   A0A0A9YJ25   A0A0A9YM55   C8KHR1   M1VK11   A0A0C9QJV3   A0A0C9REQ5   A0A3L8DNW8  

Pubmed

28756777    19121390    28004739    25401762    26823975    23493422    + More
30249741   

EMBL

KZ149953    PZC76545.1    NWSH01000272    PCG77860.1    BABH01034901    RSAL01000271    + More
RVE43169.1    GECU01033540    JAS74166.1    GECZ01032452    GECZ01026784    GECZ01024907    GECZ01016834    GECZ01016826    GECZ01013967    JAS37317.1    JAS42985.1    JAS44862.1    JAS52935.1    JAS52943.1    JAS55802.1    CVRI01000054    CRK99906.1    GGMS01000832    MBY70035.1    GEZM01038653    JAV81575.1    GGMS01014279    MBY83482.1    ABLF02029891    ABLF02029893    ABLF02029894    GFXV01006833    MBW18638.1    GEDC01031248    JAS06050.1    GBHO01011420    GDHC01008472    JAG32184.1    JAQ10157.1    GBHO01011421    GDHC01010711    JAG32183.1    JAQ07918.1    AB480199    BAI40290.1    AB698923    BAM84192.1    GBYB01015093    JAG84860.1    GBYB01015084    JAG84851.1    QOIP01000006    RLU21923.1   

Proteomes

UP000218220    UP000005204    UP000283053    UP000079169    UP000183832    UP000007819    + More
UP000279307   

PRIDE

H9JT59   

Pfam

PF07545   Vg_Tdu

Interpro

IPR011520   Vg_fam        + More
IPR006627   TDU_repeat       
IPR020003   ATPase_a/bsu_AS       

ProteinModelPortal

A0A2W1BSE0   A0A2A4K2F4   H9JT59   A0A437AYH8   A0A1B6HHJ9   A0A1B6F3M1   + More
A0A1S3DF06   A0A1J1IJG6   A0A2S2PWV4   A0A1Y1MB82   A0A2S2R2B8   J9L3M9   A0A2H8TZQ9   A0A1B6BYE8   A0A0A9YJ25   A0A0A9YM55   C8KHR1   M1VK11   A0A0C9QJV3   A0A0C9REQ5   A0A3L8DNW8  

PDB

5Z2Q     E-value=0.00428828,     Score=89

KEGG

101742732    no KO assigned | (RefSeq) protein vestigial

GO

GO:0005634   GO:0006355   GO:0005524   GO:0016021   GO:0006508   GO:0015074   GO:0030429   GO:0004003   GO:0006289   GO:0016286  

PANTHER

PTHR15950  

Length:

152

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02588

Exp number, first 60 AAs:

0.00934

Total prob of N-in:

0.11846

outside

1  -  152

 

 

Pi

191.923668

Theta

193.134048

Tajima's D

1.095209

CLR

0.002794

CSRT

0.693215339233038

Interpretation

Uncertain