Silkworm Genome Informatics Database

Gene

KWMTBOMO12841

Pre Gene Modal

BGIBMGA012721

Annotation

PREDICTED:_protein_vestigial_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr22(-):1469890-1480668 View in EpiBrowser

Location in the cell

Mitochondrial Reliability : 1.248 Nuclear Reliability : 1.366

CDS

ATGGTGTCGCGCAACCTGCCGGCGTCGTTCTTCAACGCGGCGGCGGTGGGCGGCGCGGGCGGCGTGGAGCTGTACGAGTACGACCCGTGGCACCAGCACTACTCCGGCTACGGACACGCGGCGCACCGCCACGCCGCCGAGTACCACGCGGCCGCCCAGGCGCACCACAACATGGCGGCGGCGGCGGGCTACGGGCCGCTGCTGCTGCCCCGCGGCTCTCTGCACGCGCAGTACAAGCCGGTGGAGTGGGGCGCACAGCACCACGCGGCGCACCACCTCGACCCCGCCGCGTGCTCGCCCTACTCTTATCCCGCAGTACCAGGTCTGGAAGCGCAGGTGCAGGACACGTCCAAGGACATGTACTGGTTCTGA

Protein

MVSRNLPASFFNAAAVGGAGGVELYEYDPWHQHYSGYGHAAHRHAAEYHAAAQAHHNMAAAAGYGPLLLPRGSLHAQYKPVEWGAQHHAAHHLDPAACSPYSYPAVPGLEAQVQDTSKDMYWF

Uniprot

H9JT59 A0A2A4K2F4 A0A437AYH8 A0A2W1BSE0 A0A212ET98 A0A212F149 + More
A0A0N1IPE0 A0A194Q8E7 A0A1B6L394 A0A1B6HHJ9 A0A1B6F3M1 A0A1S3DF06 J9L3M9 A0A2H8TZQ9

Pubmed

19121390 28756777 22118469 26354079

EMBL

BABH01034901 NWSH01000272 PCG77860.1 RSAL01000271 RVE43169.1 KZ149953 + More
PZC76545.1 AGBW02012618 OWR44716.1 AGBW02010955 OWR47472.1 KQ460557 KPJ13969.1 KQ459324 KPJ01669.1 GEBQ01021810 JAT18167.1 GECU01033540 JAS74166.1 GECZ01032452 GECZ01026784 GECZ01024907 GECZ01016834 GECZ01016826 GECZ01013967 JAS37317.1 JAS42985.1 JAS44862.1 JAS52935.1 JAS52943.1 JAS55802.1 ABLF02029891 ABLF02029893 ABLF02029894 GFXV01006833 MBW18638.1

Proteomes

UP000005204 UP000218220 UP000283053 UP000007151 UP000053240 UP000053268 + More
UP000079169 UP000007819

PRIDE

H9JT59

Pfam

PF07545 Vg_Tdu

Interpro

IPR011520   Vg_fam        + More
IPR006627   TDU_repeat
IPR020003   ATPase_a/bsu_AS

ProteinModelPortal

H9JT59 A0A2A4K2F4 A0A437AYH8 A0A2W1BSE0 A0A212ET98 A0A212F149 + More
A0A0N1IPE0 A0A194Q8E7 A0A1B6L394 A0A1B6HHJ9 A0A1B6F3M1 A0A1S3DF06 J9L3M9 A0A2H8TZQ9

KEGG

101742732 no KO assigned | (RefSeq) protein vestigial

GO

GO:0005634 GO:0006355 GO:0005524

PANTHER

PTHR15950

Length:

123

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.28827

Exp number, first 60 AAs:

0.2792

Total prob of N-in:

0.11785

outside

1 - 123

Pi

207.112615

Theta

180.33543

Tajima's D

0.227831

CLR

0.244438

CSRT

0.427528623568822

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics