Silkworm Genome Informatics Database

Gene

KWMTBOMO12835

Annotation

PREDICTED:_uncharacterized_protein_LOC105390591_isoform_X2_[Plutella_xylostella]

Location

Bomo_Chr22(-):1054042-1059310 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.592

CDS

ATGAGCCAACATTCTGAGGATTTAGATACTCTTATTAAGCGACGAGGTGCAATTAAAGCCAAACTTACTATTTTCAGAAATTATATTAAACCTCTTACTAGTTTTTCTAGCTTGACCGACTTGCAACGTTTTGAGTTGGAAGGACGTTATGAGCGTATTCAGTGTTTATACAACGACTTCGACAAGTTACAGACGGAGATCGAGACGTTGTTGGACGCACCCGATGACGACTTTAAATCCCGGTGTGAGTTCGAGGACCAATACCATCCTGCGGTGGCACTGGCGCGAAGCCTGCTTTCAGCAACTACCAACTCAGAAGATTCAGCTATGGTGAGAGTGCGTGGTGCCGATGGCACTAAGCACCCCGCCCGAGTTTTGCTGGACAACGTAAAAGCTGTTCATATCGAGCTCGTCACCGCATTGTCATCGGAGGCGTACATAGCTGCTCTCAAAAGATTCGTGTCTCGTCGAGGCAAGCCCCGCAGCATATGGTCCGACAATGGGACAAACTTTGTTGGTGCTTGCAACGAACTCAAAGGCGTCCTTTCAAACTCAGACATTGCGTCATTCATGTCTCAAGAAGGCATAGATTTTAGTTTTTCTCCACCTTATTCCCCTCATTTTAATGGTCTGGCTGAAGCAGCGGTTAAGGCCACTAAAGGCCATCTCAAAAAACTCCTCAGTCTTACTCACCTCACGTATGAAGAAATGTCTTCGTGCTTATGTCAAATTGAGGCCATTCTAAATTCCCGTCCACTTACTCCTATTTCCTCCGTCCGTCCGTTAGATTTAACTGCCCTTACTCCTGCTCACTTTCTGATTGGACGACCGCTCACGTCAGTTCCGCACCCGCAGATTACCGACGGCAACATCACGCGCTTGGAGCGCTACCAACGAGTGGAACTCATCAGGCAGCATTTTTGGAAGCGCTTTATTAATGAATACATTTCTCTGCTGCAGCAGAAATCTAAATGGTCCACCTCTACAGGGAGCTTGATACCAGGGACGCTAGTCCTTGTGAAGGACAGGACGCTACCGGCTCTGTTGTGGCCTTTGGGCCGCATTACCAAGACGTATCCGGGCAGCGACGGCATCACACGGGTCGCAGAGGTCAAGACGAGGACGGGGACCGTGGTGCGAGGCTTCAACTCCATCTGTCCCCTCCCTCTTCATTGA

Protein

MSQHSEDLDTLIKRRGAIKAKLTIFRNYIKPLTSFSSLTDLQRFELEGRYERIQCLYNDFDKLQTEIETLLDAPDDDFKSRCEFEDQYHPAVALARSLLSATTNSEDSAMVRVRGADGTKHPARVLLDNVKAVHIELVTALSSEAYIAALKRFVSRRGKPRSIWSDNGTNFVGACNELKGVLSNSDIASFMSQEGIDFSFSPPYSPHFNGLAEAAVKATKGHLKKLLSLTHLTYEEMSSCLCQIEAILNSRPLTPISSVRPLDLTALTPAHFLIGRPLTSVPHPQITDGNITRLERYQRVELIRQHFWKRFINEYISLLQQKSKWSTSTGSLIPGTLVLVKDRTLPALLWPLGRITKTYPGSDGITRVAEVKTRTGTVVRGFNSICPLPLH

Uniprot

A0A0J7KBV8 A0A151IPF9 A0A0A9Z2M8 A0A2L2YW58 A0A0J7KFV3 A0A1B6CM38 + More
A0A2S2PB26 A0A182GGM4 J9JVI2 A0A1Y1MWL6 A0A1Y1LIG5 A0A1B6GNW4 A0A1Y1MY22 A0A1Y1KN79

Pubmed

25401762 26561354 26483478 28004739

EMBL

LBMM01009941 KMQ87772.1 KQ976863 KYN07859.1 GBHO01005508 GBHO01005504 + More
JAG38096.1 JAG38100.1 IAAA01066606 LAA12316.1 LBMM01008181 KMQ89076.1 GEDC01022769 JAS14529.1 GGMR01014052 MBY26671.1 JXUM01062058 KQ562182 KXJ76474.1 ABLF02026857 GEZM01018697 JAV90052.1 GEZM01054765 JAV73413.1 GECZ01005654 JAS64115.1 GEZM01018702 JAV90048.1 GEZM01078370 GEZM01078366 GEZM01078363 JAV62754.1

Proteomes

UP000036403 UP000078542 UP000069940 UP000249989 UP000007819

Pfam

PF17921   Integrase_H2C2        + More
PF05380   Peptidase_A17
PF18701   DUF5641
PF00665   rve
PF05585   DUF1758
PF00078   RVT_1

Interpro

IPR001584   Integrase_cat-core        + More
IPR012337   RNaseH-like_sf
IPR008042   Retrotrans_Pao
IPR040676   DUF5641
IPR041588   Integrase_H2C2
IPR036397   RNaseH_sf
IPR008737   Peptidase_asp_put
IPR000477   RT_dom

SUPFAM

SSF53098 SSF53098

Gene 3D

3.30.420.10

ProteinModelPortal

A0A0J7KBV8 A0A151IPF9 A0A0A9Z2M8 A0A2L2YW58 A0A0J7KFV3 A0A1B6CM38 + More
A0A2S2PB26 A0A182GGM4 J9JVI2 A0A1Y1MWL6 A0A1Y1LIG5 A0A1B6GNW4 A0A1Y1MY22 A0A1Y1KN79

KEGG

105842541 no KO assigned | (RefSeq) uncharacterized LOC105842541

GO

GO:0003676 GO:0015074 GO:0016021 GO:0006508 GO:0030429 GO:0004003 GO:0005634 GO:0006289 GO:0016286

Length:

391

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02253

Exp number, first 60 AAs:

0.00791

Total prob of N-in:

0.00885

outside

1 - 391

Pi

235.397308

Theta

185.993543

Tajima's D

1.461175

CLR

0

CSRT

0.778911054447278

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree