Gene

KWMTBOMO12830

Annotation

PREDICTED:_mucin-2-like_[Amyelois_transitella]

Location

Bomo_Chr22(-):866671-869839      View in EpiBrowser

Full name

Retrovirus-related Pol polyprotein from transposon TNT 1-94      

Location in the cell

Nuclear   Reliability : 3.055

CDS

ATGGCTACCAACTACCTTATCAATGTGCCGAAACTAAAAGGACGCGATAATTATTCAGAGTGGTGTTTCGCTGCAGAAAATTTTTTAGTACTCGAAGGCATGAAGCATTGCATCAAGCCAGAACCGGGGAAAGAAATAGCAAGCGCGGATGACGAAAAAACTAAAGCCAAATTGATCATGACCATCGACCCGTCGTTGTATGTACATGTCAAAACCGTTAAATCGTCGAAGGAATTGTGGGATAAACTAAGGCAATTATTCGATGATAGTGGCTTTTCACGAAGAATTAGTCTATTGAGAAATTTAATTTCAATCCGGCGAGATAATTGCAGTTCGATGACGTCATACGTGACGCAGATAATCGATACAGCGCAGAAATTAAGTGGAACGGGATTTGAAATAAACGAGGAATGGGTGGGATCATTGCTGTTGGCGGGGCTGCCAGAAAAGTTTGCCCCAATGATCATGGCAATTGAACATTCCGGGATTGCCATAAACTCTGATGTAATTAAAACAAAATTACTTGATATGAGTTCCGAGATCGGTGACCATGATCCGGAAGTTGCACTATGGTCGAAACCAAAAACGAGGGTAGATCAAAATTTCAATACAAAAGGCGAGAAACGAACATCAAATTATACGTCAAATGTAAAAAAAAAGGTTATAAAATGCTATAAATGTAAGCAAAGTGGTCATTATAAAAATCAGTGTCCGAGTTTAGAAGCCGAAAAAAGAAAACAATCCAACGCCTTTAGTGCTATTTTCTTAAGTGGAAATTTCAACTGCGATAGTTGGTACATAGATAGCGGGGCCAGCAAACACATGACAGCAAAGAAAGAATACGTTGAGAGTCCATCATTTGAACATGAAATTAAAGAAATAATTGTGGCGAACAAAACATCCGTCCCGGTAGTGTGTTCTGGTGATGTAAACATAATCACAGTTGTGAATGGTGTAGAATATGACATCACAGTTTCAAATGTATTGTGCATACCGAGTTTAACAACAAACTTGCTTTCAGTGAGTCAGTTGATTGAGAATGGCAATAAGGTAATCTTTAAAGAGAAATTTTGCTATATTTACAATCAACAGAGAACTCTAGTTGGAAAGGCAGAATTAGTAGATGGTGTGTACAGATTATATACTAAGAAATCAGAACAGTTATTCGCAGCCACAGCTAAGGTGTCGAGTGAAACATGGCATCGACGATTAGGGCATATCAACAGTACCAGCTTGAACAAAATGAAGAATGGAGCTACGACAGGTATTTCATACACAAATAAAGCTGATGTTGACAAATCTAAGTGTACTGTTTGCTGTAAGGGGAAGCAGGCTAGACTACCTTTTCAGCCTAGTTCAACTAGCACCCAAGATATTTTAGAATTGATACACTCAGATGTGTGTGGTCCGATGGAAAATGTGTCTATTGGAGGTTCCAGATACTATGTCTTATTTGTGGATGACTACAGCAGAATGGTTTTTGTATACTTCATGAAAACAAAGTCAGAGGTATTTAAGTTTTTCAAAGAATTCCAGTCACTTGTAGAAAAACAGACAGATCGGAAAATTAAAATTCTAAGAACAGACAATGGCGGTGAGTACTGCAGTCAAGACTTTGAAAGATATCTAAAACAACACGGAATAATTCACCAGAAAAGTAATGCTTACACACCACAGCAAAATGGTGTGTGTGAAAGGATGAATAGGTCATTAGTTGAAAAGGCTAGATGTCTAATTTTTGATGCTGGTTTACATAAAAAGTTTTGGGCAGAAGCCATAAATACCTCTGTATACTTAAGGAATCGATCAGTTGTTACTGGATTAAACAACATGACTCCATATGAAGCCTGGACAAAGAAAAAACCTGACTTAAGTCATGTACGTATTTTTGGAAGTAAGGTTATGATGCACATACCAAAAGAAAAGCGCTTAAAATGGGATATGAAGGCTAAAGAACTTATTTTGGTAGGCTATGCAGACAATGTAAAAGGCTATAGGGTTTATAACCCAGAAAATAACTCTGTCACAACTAGCAGAGACATTATAATAATGGAGAAAACCGAAAATACAATTGAAATTCCTATTGAGTGCAAGGCTCCAGCGGAGGAACAGAGAGAAGGAGACGAAAGTAGAACTACAGAAAGTACAGACACTGAATGTGATGATAATGATATCACATATATTCCAGAAGCTTCTTCAGTAAGTGACTCATATGACAGTTTTTCTGAAACAGCATCAGAACCAGAACCTTCATTATTAGAATTGAATCAGGATATTCCAAACAAGCGAGTGAGAAAAATACCTGATAGATTTAGCTATAGCCACTTATGTATTGCAGAATCAGATGATCAAAATATAATGGATATTTCACTCAAGGAAGCTTTAAATGGACCTGAAAGTAAATTTTGGAGATCAAGCATGGAGGAGGAATTAGAATCATTTAAGAAAAATGATGCATGGGAACTTGTGGATAAGCCTCGTGACTCTACAGTAGTGCCGTGCAAATGGGTATTTAAAAAGAAGTATGATAGTGTCGGTAATGTGCGTTATCGTGCTAGATTAGTGGCAAAAGGCTTTTCACAGAAAGCTGGCATAGACTATCATGAAACTTTTTCACCTGTGCTACGTTATACTACTTTAAGATTGTTATTTTCTATAGCAGTAAAACTAGGTTTAGATATACGTCATCTTGATGTCACTACAGCCTTTCTAAATGGTTTTTTGAATGAATCTGTGTATATGCAAAAACCTGTCCTTTATAGAGATTGTAATGATAATGATAACAAAGTATTAAAGCTTAAACGTGCCATATATGGACTTAAGCAATCATCTCGTGCTTGGTATCAGAGAGTTAATGATTACTTAGAGTCTTTAGGGTATTTAAAATCTAAGTATGAACCGTGTTTGTTTACGAAGTCTGAAGGAAATGCTAAAGTTATAATAGCATTGTTTGTTGATGATTTTTTTGTTTTGCTAACTGTAAAATGGCAACTAATCAGTTAA

Protein

MATNYLINVPKLKGRDNYSEWCFAAENFLVLEGMKHCIKPEPGKEIASADDEKTKAKLIMTIDPSLYVHVKTVKSSKELWDKLRQLFDDSGFSRRISLLRNLISIRRDNCSSMTSYVTQIIDTAQKLSGTGFEINEEWVGSLLLAGLPEKFAPMIMAIEHSGIAINSDVIKTKLLDMSSEIGDHDPEVALWSKPKTRVDQNFNTKGEKRTSNYTSNVKKKVIKCYKCKQSGHYKNQCPSLEAEKRKQSNAFSAIFLSGNFNCDSWYIDSGASKHMTAKKEYVESPSFEHEIKEIIVANKTSVPVVCSGDVNIITVVNGVEYDITVSNVLCIPSLTTNLLSVSQLIENGNKVIFKEKFCYIYNQQRTLVGKAELVDGVYRLYTKKSEQLFAATAKVSSETWHRRLGHINSTSLNKMKNGATTGISYTNKADVDKSKCTVCCKGKQARLPFQPSSTSTQDILELIHSDVCGPMENVSIGGSRYYVLFVDDYSRMVFVYFMKTKSEVFKFFKEFQSLVEKQTDRKIKILRTDNGGEYCSQDFERYLKQHGIIHQKSNAYTPQQNGVCERMNRSLVEKARCLIFDAGLHKKFWAEAINTSVYLRNRSVVTGLNNMTPYEAWTKKKPDLSHVRIFGSKVMMHIPKEKRLKWDMKAKELILVGYADNVKGYRVYNPENNSVTTSRDIIIMEKTENTIEIPIECKAPAEEQREGDESRTTESTDTECDDNDITYIPEASSVSDSYDSFSETASEPEPSLLELNQDIPNKRVRKIPDRFSYSHLCIAESDDQNIMDISLKEALNGPESKFWRSSMEEELESFKKNDAWELVDKPRDSTVVPCKWVFKKKYDSVGNVRYRARLVAKGFSQKAGIDYHETFSPVLRYTTLRLLFSIAVKLGLDIRHLDVTTAFLNGFLNESVYMQKPVLYRDCNDNDNKVLKLKRAIYGLKQSSRAWYQRVNDYLESLGYLKSKYEPCLFTKSEGNAKVIIALFVDDFFVLLTVKWQLIS

Catalytic Activity

a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1)

Keywords

Aspartyl protease   Complete proteome   Endonuclease   Hydrolase   Metal-binding   Nuclease   Nucleotidyltransferase   Protease   Reference proteome   RNA-directed DNA polymerase   Transferase   Transposable element   Zinc   Zinc-finger  

Feature

chain  Retrovirus-related Pol polyprotein from transposon TNT 1-94

Uniprot

A0A212F7V4   A0A1Y1N668   A0A1Y1N932   V5GAG2   A0A2A4J959   A0A2A4JRI1   + More
A0A1Y1N6L8   A0A0J7NHJ8   A0A1Y1NAZ7   A0A194RU38   A0A1Y1N664   A0A0A1WXQ3   A0A0N1ICY1   A0A0A9WPH5   A0A0A9WRE3   A0A034VP70   A0A1W7R6K6   A0A1W7R6J6   A0A0V1APS7   A0A0V1FKH2   A0A0V0TUP0   A0A0V0T3I0   A0A0V1K1Y9   A0A0V1F2E6   A0A2J7Q1Z2   A0A2J7RKJ6   A0A1B6E9D0   A0A085MVP5   A0A2J7R668   A0A2J7R8S8   A0A085N572   A0A355BEE2   A0A0K8U6S2   A0A1Y1N3X2   A0A0A1XLZ7   A0A1Y1LYU4   A0A0J7KG03   W4VRQ4   W8BYI7   A0A085MSF4   W8ANX7   A0A0V0Z6Q0   A0A0J7K6W1   A0A1W7R670   W8ADM5   A0A1W7R663   A0A0V0YNF4   A0A0V0RWJ3   T1PKV2   A0A0J7KDR3   A0A0A1X768   A0A224XA26   A0A0A9XVJ9   A0A2M4CV35   A0A085NQR3   A0A085N9K0   A0A2M3YZL7   A0A2M3YZL3   A0A251T6N3   A0A0N5DDW3   A0A0K8U956   A0A0V0V098   A0A0V1NJN8   A0A151T355   A0A0V1APU2   A0A0V1GTY0   W4VRP9   A0A0K8U6X2   A0A0K8WJW9   A0A131XNF9   P10978   A0A0V1MGJ0   A0A151RCT9   A0A438J1J0   W8B7K5   A0A224X581   A0A3S3NIE3   A0A0P6IU13   A0A151THM1   A0A0K8U8C3   A0A2N9IWX1   A0A2R6RYD4   A0A2N9EZ52   A0A2K3MYT4   A0A2K3MZ63   A0A085MV21   A0A1Y1K3Y8   A0A1Y1K1A3   Q9ZRJ0  

Pubmed

22118469    28004739    26354079    25830018    25401762    25348373    + More
24929829    30148503    24495485    28538728    22057054    2536143    30458008    26999592    29661190    24500806    28382043    8624443   

EMBL

AGBW02009826    OWR49812.1    GEZM01011856    JAV93393.1    GEZM01011857    JAV93390.1    + More
GALX01001351    JAB67115.1    NWSH01002292    PCG68657.1    PCG68658.1    NWSH01000816    PCG74073.1    GEZM01011858    GEZM01011854    JAV93389.1    LBMM01004924    KMQ91985.1    GEZM01011855    JAV93396.1    KQ459875    KPJ19636.1    GEZM01011859    JAV93384.1    GBXI01011094    JAD03198.1    KQ460882    KPJ11482.1    GBHO01033237    JAG10367.1    GBHO01033235    JAG10369.1    GAKP01015352    JAC43600.1    GEHC01000867    JAV46778.1    GEHC01000868    JAV46777.1    JYDH01000330    KRY26802.1    JYDT01000069    KRY86576.1    JYDJ01000136    KRX42725.1    JYDJ01000808    KRX33413.1    JYDS01000009    JYDV01000021    KRZ33483.1    KRZ41218.1    JYDR01000001    KRY80095.1    NEVH01019375    PNF22597.1    NEVH01002725    PNF41351.1    GEDC01002834    JAS34464.1    KL367628    KFD61291.1    NEVH01006980    PNF36330.1    NEVH01006721    PNF37230.1    KL367553    KFD64618.1    DNYX01000353    HBK84078.1    GDHF01030254    JAI22060.1    GEZM01013472    GEZM01013471    GEZM01013470    JAV92539.1    GBXI01002679    JAD11613.1    GEZM01045163    GEZM01045162    JAV77888.1    LBMM01008124    KMQ89126.1    GANO01000510    JAB59361.1    GAMC01008189    JAB98366.1    KL367691    KFD60150.1    GAMC01020352    JAB86203.1    JYDQ01000379    KRY07987.1    LBMM01012645    KMQ86082.1    GEHC01000989    JAV46656.1    GAMC01020355    JAB86200.1    GEHC01000988    JAV46657.1    JYDU01000001    KRY01876.1    JYDL01000068    KRX18751.1    KA648745    AFP63374.1    LBMM01008999    LBMM01007721    KMQ88472.1    KMQ89488.1    GBXI01007143    JAD07149.1    GFTR01008662    JAW07764.1    GBHO01020706    JAG22898.1    GGFL01004951    MBW69129.1    KL367480    KFD71809.1    KL367527    KFD66146.1    GGFM01000952    MBW21703.1    GGFM01000953    MBW21704.1    CM007900    OTG06758.1    GDHF01029191    JAI23123.1    JYDN01000113    KRX56900.1    JYDM01000185    KRZ84108.1    CM003610    KYP61490.1    KRY26801.1    JYDP01000258    KRZ01816.1    GANO01000659    JAB59212.1    GDHF01029905    JAI22409.1    GDHF01000873    JAI51441.1    GEFH01000951    JAP67630.1    X13777    JYDO01000104    KRZ71003.1    KQ483843    KYP40337.1    QGNW01000068    RVX02815.1    GAMC01020736    JAB85819.1    GFTR01008771    JAW07655.1    NCKU01012701    RWS00004.1    GDUN01000695    JAN95224.1    CM003608    KYP66486.1    GDHF01029405    JAI22909.1    OIVN01006239    SPD28653.1    NKQK01000002    PSS35035.1    OIVN01000423    SPC79931.1    ASHM01014005    PNX95963.1    ASHM01014140    PNX96091.1    KL367637    KFD61067.1    GEZM01096003    JAV55208.1    GEZM01096000    JAV55213.1    D83003    BAA11674.1   

Proteomes

UP000007151    UP000218220    UP000036403    UP000053240    UP000054776    UP000054995    + More
UP000055048    UP000054805    UP000054826    UP000054632    UP000235965    UP000054783    UP000054815    UP000054630    UP000215914    UP000046395    UP000054681    UP000054924    UP000075243    UP000055024    UP000084051    UP000054843    UP000288805    UP000285301    UP000241394    UP000236291   

Pfam

PF13976   gag_pre-integrs        + More
PF00098   zf-CCHC
PF00665   rve
PF07727   RVT_2
PF13961   DUF4219
PF14244   Retrotran_gag_3
PF04500   FLYWCH
PF05380   Peptidase_A17
PF00078   RVT_1
PF05585   DUF1758

Interpro

IPR025724   GAG-pre-integrase_dom        + More
IPR036397   RNaseH_sf       
IPR001584   Integrase_cat-core       
IPR039537   Retrotran_Ty1/copia-like       
IPR036875   Znf_CCHC_sf       
IPR012337   RNaseH-like_sf       
IPR001878   Znf_CCHC       
IPR013103   RVT_2       
IPR025314   DUF4219       
IPR029472   Copia-like_N       
IPR007588   Znf_FLYWCH       
IPR008042   Retrotrans_Pao       
IPR000477   RT_dom       
IPR008737   Peptidase_asp_put       

SUPFAM

SSF53098   SSF53098        + More
SSF57756   SSF57756       

Gene 3D

3.30.420.10    

ProteinModelPortal

A0A212F7V4   A0A1Y1N668   A0A1Y1N932   V5GAG2   A0A2A4J959   A0A2A4JRI1   + More
A0A1Y1N6L8   A0A0J7NHJ8   A0A1Y1NAZ7   A0A194RU38   A0A1Y1N664   A0A0A1WXQ3   A0A0N1ICY1   A0A0A9WPH5   A0A0A9WRE3   A0A034VP70   A0A1W7R6K6   A0A1W7R6J6   A0A0V1APS7   A0A0V1FKH2   A0A0V0TUP0   A0A0V0T3I0   A0A0V1K1Y9   A0A0V1F2E6   A0A2J7Q1Z2   A0A2J7RKJ6   A0A1B6E9D0   A0A085MVP5   A0A2J7R668   A0A2J7R8S8   A0A085N572   A0A355BEE2   A0A0K8U6S2   A0A1Y1N3X2   A0A0A1XLZ7   A0A1Y1LYU4   A0A0J7KG03   W4VRQ4   W8BYI7   A0A085MSF4   W8ANX7   A0A0V0Z6Q0   A0A0J7K6W1   A0A1W7R670   W8ADM5   A0A1W7R663   A0A0V0YNF4   A0A0V0RWJ3   T1PKV2   A0A0J7KDR3   A0A0A1X768   A0A224XA26   A0A0A9XVJ9   A0A2M4CV35   A0A085NQR3   A0A085N9K0   A0A2M3YZL7   A0A2M3YZL3   A0A251T6N3   A0A0N5DDW3   A0A0K8U956   A0A0V0V098   A0A0V1NJN8   A0A151T355   A0A0V1APU2   A0A0V1GTY0   W4VRP9   A0A0K8U6X2   A0A0K8WJW9   A0A131XNF9   P10978   A0A0V1MGJ0   A0A151RCT9   A0A438J1J0   W8B7K5   A0A224X581   A0A3S3NIE3   A0A0P6IU13   A0A151THM1   A0A0K8U8C3   A0A2N9IWX1   A0A2R6RYD4   A0A2N9EZ52   A0A2K3MYT4   A0A2K3MZ63   A0A085MV21   A0A1Y1K3Y8   A0A1Y1K1A3   Q9ZRJ0  

PDB

4NYF     E-value=0.0294741,     Score=91

KEGG

NA   

GO

GO:0015074   GO:0000943   GO:0003676   GO:0008270   GO:0003964   GO:0004190   GO:0004519   GO:0004491   GO:0006508   GO:0030429   GO:0004003   GO:0005634   GO:0006289   GO:0016286  

PANTHER

PTHR11439  

Length:

1000

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.25418

Exp number, first 60 AAs:

0.00036

Total prob of N-in:

0.00018

outside

1  -  1000

 

 

Pi

165.685223

Theta

126.359502

Tajima's D

0.36578

CLR

113.694797

CSRT

0.474776261186941

Interpretation

Uncertain