Gene

KWMTBOMO12821

Annotation

PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_[Amyelois_transitella]

Location

Bomo_Chr22(-):641462-643659      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 2.301

CDS

ATGGGTGATTTCAACACCGACCTTGCAGTTCATTCACCTCGATCCTGTAAACTCTTGGCTATCGTCGAATCTGCTAATCTTCAAGTCCTGCCTCTACAAGCCACTCATTGGAACAGTGATGGGAATGACACCTGGCTTGATCTAATTCTTACTTCCTCTCCCACCCTTGTATCATCTCATGGTCAATATCCCGCACCTGGCTTCTCTCATCATGACCTCATTTTCCTCTCTTACTCCTTAAGTCCTCCGAAGTCCCAACCTAGGCTTATGAGCATACGTAGTTTCAAACGCTTAAATTTAGATCAGTTGCAAAAGGATGCGTCAGAATTAAAATGGGATGATTTTATGGCTACACCTTCTGTAGATGATAAAGTGCGTATTTTTAATGAAACTATCCTTAACTTGTATGATATCCATGCGCCTGTTAGGAAGGTGAAGATGAAGCGTCCTCCAGCTCCATGGATAACGAGAGGTGTGCGTATGTGTATGCGGCGTAGAGATAGAGCTTTTCGTAAATTCCGGAGGGACCGATGCGATGACAATTGGGTTTCTTATAAAATTGCGAGAAACCGGTGTAACCAGGTGATACGAAATGCTAAACGCCGCTACTTTCTACATAATATATCGTCTTCTTCAGTTGCTAATATCTGGAAGTTCCTCGGAACTCTAGGTATTGGCAAACAACGTCAATACAGCTTTCGGTCGGCAATTGGACTGGATGATATCAATGCGCACTTTACTACAAGTATCCCGTTGGATCACCAGTCTACGCGCCGTACTGTGGAGTTTCTGGAAGGACTATCCCCTCCAAATATCGACCCCTTTAAATTTTCCACGGTATCTATGGGTGAGATCAAAAAGATAATCCTCTCTATAAGATCCAATGCTGTGGGTCACGACGGAGTGAGCCGCCAGATGATAGTGCTGATTCTCGATTGTCTTCTTCCATCGTTACAACATTTAATCAATTCATCTTTGTCCTCTGGTACTTTTCCTGTACAGTGGCGCAAAGCATTTGTGATTCCCTTACCCAAAGTCTCTAATCCGACTCTTCCTACTCATTTCCGTCCCATATCGATTCTCCCTTTTCTGTCCAAGGTGTTGGAGGCCTGTGTACATAACCAACTGTCCCAGTTTGTTCATAAGAATGGTTTAATAAACTCTCTACAGTCTGGCTTCAGACCGGGCTACAGCACCATCTCCGCTCTCCTCAAAGTGACAGGCGATGTTAGGGCTGGAATGGAGGATACTAAAGTCACATTGTTGGCTTTGGTCGATTTCTCTAATGCCTTTAATACCGTCAGTCACGAAATCCTTTTATCTATCCTGTCCTATCTTATGATTTCGCCGGAGGTGCTGAAATGGTTTACATCATATCTTCGAGGGCGCCAGCAATCGGTCCGCATTGATGAGTCTTCGTCTTCATGGCGTGATCTAGATACCGGTGTCCCTCAAGGCGGAATTCTCTCCCCTTTGCTTTTCTCTCTCTTTATCAATCTCATAACTCAGTCCCTTCAGTGTTCGTATCACCTGTACGCTGACGACCTACAGCTGTACTCGCAGGCTACTGTGGACTGTGTGTCTGAATTTGTTCGCAGAGTGAATGGGGATCTAGAGGCTATATGCGATTGGTCTGGTAGGTTTGGTTTGACGGTCAATCCAACCAAATGTCAGGCGATTATTATTGGTAGTCCCCGTTTGTTGGGACGATTAGATTTTAGCTCACTCCCACCCGTAACTTATAATGGAGCAATTATACCTTTGAGCTCATCAGTCAAAAACCTTGGACTGTATATGGATTCTAGACTTGATTGGACGGTACAGGTGTTGAATGTTAGTCGGAAGGATCTCTGCGTGCCCTTTATCGCTTCAAGAACTTTCTCCCTTTCAAGATAA

Protein

MGDFNTDLAVHSPRSCKLLAIVESANLQVLPLQATHWNSDGNDTWLDLILTSSPTLVSSHGQYPAPGFSHHDLIFLSYSLSPPKSQPRLMSIRSFKRLNLDQLQKDASELKWDDFMATPSVDDKVRIFNETILNLYDIHAPVRKVKMKRPPAPWITRGVRMCMRRRDRAFRKFRRDRCDDNWVSYKIARNRCNQVIRNAKRRYFLHNISSSSVANIWKFLGTLGIGKQRQYSFRSAIGLDDINAHFTTSIPLDHQSTRRTVEFLEGLSPPNIDPFKFSTVSMGEIKKIILSIRSNAVGHDGVSRQMIVLILDCLLPSLQHLINSSLSSGTFPVQWRKAFVIPLPKVSNPTLPTHFRPISILPFLSKVLEACVHNQLSQFVHKNGLINSLQSGFRPGYSTISALLKVTGDVRAGMEDTKVTLLALVDFSNAFNTVSHEILLSILSYLMISPEVLKWFTSYLRGRQQSVRIDESSSSWRDLDTGVPQGGILSPLLFSLFINLITQSLQCSYHLYADDLQLYSQATVDCVSEFVRRVNGDLEAICDWSGRFGLTVNPTKCQAIIIGSPRLLGRLDFSSLPPVTYNGAIIPLSSSVKNLGLYMDSRLDWTVQVLNVSRKDLCVPFIASRTFSLSR

Uniprot

A0A3S2TB34   A0A2A4JRM8   A0A3S2P9A9   A0A1B6L6Y3   A0A0A9YIX2   A0A3S2LET6   + More
A0A0J7K589   A0A0A9WX05   A0A0J7N335   A0A3C1S1N3   U5ENG8   A0A0J7K195   U5EQV9   A0A1B6LTE5   A0A023EXE1   W8AIM4   W8B6W6   A0A1W7R6F6   U5EQT8   A0A3C1S2P1   U5ETR7   A0A354GES4   U5EQB9   A0A0J7KR96   A0A1W7R648   A0A354GIY0   U5EUG4   U5EQQ2   A0A354GJG9   U5EEL4   A0A3C1RZS6   U5EQA6   A0A3L8DSB3   U5ETW8   A0A1B6KD49   A0A1Y1NKD6   A0A1Y1M3U5   A0A3C1RY27   U5EVC6   A0A354GHC6   U5EEC7   A0A1Y1NB24   A0A1Y1L0L4   A0A1Y1LVZ3   A0A2A4JF59   A0A3C1S360   U5ER05   A0A1B6IH82   A0A2A4KAV4   A0A3C1RYE8   U5EF12   A0A1W7R6E4   A0A354GG23   U5EQJ2   A0A1Y1LSZ2   A0A1Y1N9S9   A0A1Y1KZ78   A0A2A4JM54   A0A2B4RHP5   A0A432PY41   A0A1W7R6J3   Q4F8Q2   A0A2W1BK42   K7JTK2   A0A0J7KSZ7   T1DE06   A0A1Y1LFG1   A0A1Y1LAM2   A0A1L8DJB0   A0A1Y1LAN8   K7JMB3   A0A1Y1LAP1   A0A432I5G5   A0A2A4IWQ4   A0A1W7R6K8   A0A3C1S4Q7   A0A0A9YBT8   A0A3B3BNA3  

Pubmed

25401762    30148503    25474469    24495485    30249741    28004739    + More
28756777    20075255    24330624    29451363   

EMBL

RSAL01001570    RVE40758.1    NWSH01000817    PCG74070.1    RSAL01000177    RVE45007.1    + More
GEBQ01020572    JAT19405.1    GBHO01012041    GBHO01012038    JAG31563.1    JAG31566.1    RSAL01000171    RVE45163.1    LBMM01014048    KMQ85356.1    GBHO01031326    GBHO01031325    JAG12278.1    JAG12279.1    LBMM01010997    KMQ87090.1    DMQF01000352    HAO15199.1    GANO01004094    JAB55777.1    LBMM01017805    KMQ83966.1    GANO01004066    JAB55805.1    GEBQ01013060    GEBQ01010336    JAT26917.1    JAT29641.1    GBBI01004799    JAC13913.1    GAMC01021038    GAMC01021033    GAMC01021031    JAB85522.1    GAMC01021037    GAMC01021036    JAB85519.1    GEHC01000896    JAV46749.1    GANO01004070    JAB55801.1    DMQF01000361    HAO15230.1    GANO01004238    JAB55633.1    DNUT01000056    HBI39512.1    GANO01004361    JAB55510.1    LBMM01004152    KMQ92759.1    GEHC01001007    JAV46638.1    DNUT01000451    HBI40968.1    GANO01003893    JAB55978.1    GANO01004126    JAB55745.1    DNUT01000507    HBI41157.1    GANO01004275    JAB55596.1    DMQF01000157    HAO14486.1    GANO01004338    JAB55533.1    QOIP01000004    RLU23301.1    GANO01004166    JAB55705.1    GEBQ01030598    JAT09379.1    GEZM01000581    JAV98361.1    GEZM01041318    GEZM01041317    JAV80524.1    DMQF01000003    HAO13943.1    GANO01001936    JAB57935.1    DNUT01000297    HBI40414.1    GANO01004362    JAB55509.1    GEZM01007604    JAV95063.1    GEZM01074146    JAV64657.1    GEZM01045590    GEZM01045589    JAV77734.1    NWSH01001817    PCG70032.1    DMQF01000478    HAO15711.1    GANO01003995    JAB55876.1    GECU01021424    JAS86282.1    NWSH01000010    PCG80923.1    DMQF01000030    HAO14052.1    GANO01004069    JAB55802.1    GEHC01000909    JAV46736.1    DNUT01000170    HBI39961.1    GANO01004258    JAB55613.1    GEZM01051381    GEZM01051380    JAV74995.1    GEZM01008907    JAV94684.1    GEZM01074147    JAV64656.1    NWSH01000998    PCG73165.1    LSMT01000554    PFX16333.1    QNXQ01000100    RUM30450.1    GEHC01000892    JAV46753.1    DQ099730    AAZ15237.1    KZ150070    PZC74075.1    AAZX01004038    LBMM01003452    KMQ93522.1    GALA01001237    JAA93615.1    GEZM01061182    JAV70705.1    GEZM01061185    JAV70702.1    GFDF01007660    JAV06424.1    GEZM01061184    JAV70703.1    AAZX01023421    AAZX01025062    GEZM01061183    JAV70704.1    QNYJ01000098    RUA05525.1    NWSH01006271    PCG63543.1    GEHC01000940    JAV46705.1    DMQF01000446    HAO15584.1    GBHO01015041    JAG28563.1   

Proteomes

UP000283053    UP000218220    UP000036403    UP000279307    UP000225706    UP000287362    + More
UP000002358    UP000261560   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF06441   EHN
PF03372   Exo_endo_phos

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR000639   Epox_hydrolase-like       
IPR010497   Epoxide_hydro_N       
IPR029058   AB_hydrolase       
IPR011011   Znf_FYVE_PHD       

SUPFAM

SSF56219   SSF56219        + More
SSF53474   SSF53474       
SSF57903   SSF57903       

Gene 3D

3.60.10.10    

ProteinModelPortal

A0A3S2TB34   A0A2A4JRM8   A0A3S2P9A9   A0A1B6L6Y3   A0A0A9YIX2   A0A3S2LET6   + More
A0A0J7K589   A0A0A9WX05   A0A0J7N335   A0A3C1S1N3   U5ENG8   A0A0J7K195   U5EQV9   A0A1B6LTE5   A0A023EXE1   W8AIM4   W8B6W6   A0A1W7R6F6   U5EQT8   A0A3C1S2P1   U5ETR7   A0A354GES4   U5EQB9   A0A0J7KR96   A0A1W7R648   A0A354GIY0   U5EUG4   U5EQQ2   A0A354GJG9   U5EEL4   A0A3C1RZS6   U5EQA6   A0A3L8DSB3   U5ETW8   A0A1B6KD49   A0A1Y1NKD6   A0A1Y1M3U5   A0A3C1RY27   U5EVC6   A0A354GHC6   U5EEC7   A0A1Y1NB24   A0A1Y1L0L4   A0A1Y1LVZ3   A0A2A4JF59   A0A3C1S360   U5ER05   A0A1B6IH82   A0A2A4KAV4   A0A3C1RYE8   U5EF12   A0A1W7R6E4   A0A354GG23   U5EQJ2   A0A1Y1LSZ2   A0A1Y1N9S9   A0A1Y1KZ78   A0A2A4JM54   A0A2B4RHP5   A0A432PY41   A0A1W7R6J3   Q4F8Q2   A0A2W1BK42   K7JTK2   A0A0J7KSZ7   T1DE06   A0A1Y1LFG1   A0A1Y1LAM2   A0A1L8DJB0   A0A1Y1LAN8   K7JMB3   A0A1Y1LAP1   A0A432I5G5   A0A2A4IWQ4   A0A1W7R6K8   A0A3C1S4Q7   A0A0A9YBT8   A0A3B3BNA3  

PDB

6AR3     E-value=1.23167e-05,     Score=119

KEGG

101735858    no KO assigned | (RefSeq) uncharacterized LOC101735858

GO

GO:0003964   GO:0016021  

Length:

631

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.628419999999999

Exp number, first 60 AAs:

0.00042

Total prob of N-in:

0.01650

outside

1  -  631

 

 

Pi

207.442479

Theta

165.237023

Tajima's D

0.937918

CLR

0

CSRT

0.650267486625669

Interpretation

Uncertain