SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO12818
Pre Gene Modal
BGIBMGA012744
Annotation
Lebercilin-like_protein_[Papilio_xuthus]
Location in the cell
Nuclear   Reliability : 4.345
 

Sequence

CDS
ATGTCGAACCACTCGATCGCCAGCAAGGACCGTTACGTCACCCAGCGAGTGCTCTCCGCGAAGACGCATAGAGTCAAACAGCTGCAGAATCAGTTGGCTGACGCGCATTATCATTTACAGGAACTGAGCAATGAGAACAGGGTCCTTAGAGCGATGCAAAAGAAGCAAGAGATCGCTTTACAGAGGTATGAGAACTCCAACGCTGAACTACCCCAAGTGTTGAATTCTCACAACGAAGAGATCAGGATACAGCAGAGCAAATACAAACAGCTGAAGCAACAATACAGGGAGCTGACGCAGCGGATGAAGGAGAAGGACATGCAGTTGCAGCAGTTGAGAGATGAACATCAGCACCTGTTGGACCTGAGCAAGGATAGAAATCTACTAGAACGCGAGAAACTCCAGGCTGAAGTAACGGAATTATCGGCTAAAGTACAACAACAAAACGAGACGATATCGATGCTTCAGCGGCGGATCGCTCTCGAAGCGAAGAACTTCAAACATCAACTACAGCAGGAGATGAACAAGCATAAAGATACTAGACACGATCTGGATTTGGCTATTGTTAATGCGGATAAACTATCCAGTATTATTGAGATGAAAGAGAAAATGCTTAGTACAGCCGCTAGTCGCGGTGTGAAATCTCCAACAAAGGGCCCAACATTAAATGTAACAAGACCGATCAGCAGACACAAACTAGATGCTTCTACAAAATTGAATGACACCAGCCTTAATGTAGATCAGAACATATTAGCAAAATTATGTGAAAATTCACGCAGTCTCAGTAGTGCACTGTCACATGATGAAGATACCTCGTCATCTGTTGAGCCGCGCTCAAGATATGCTAGAAGTCGCACTAGTTCTACCAGCACACGTTCTACACCACAAACGCGAGTATCGTCCAAAAGCTCTGATGAAATGATCGAGCTAGCCAAAACTGTACAAGACGGCATGGCTGATTTGGCAATATTCGATAAAGATCTGGCAACGGAGAATTCCACACCAGAGGAAATGCAAAAACGTATGGAAGCTATGAAAATTGAATTAATTAACAAAATAAAGAATAACGATGAACCGGCCCCAAAAAAAGCGAGTGCTTTAAGAAGGAAATCTACTGAAGAATCAATCGAGGAACAAATTATTGAATCTGATAAATCAGACAGACCTAAATCTAGAGGACGAAGACATTCTAATGTATCATTTTTAGAAAGTTCACAGATTGAATCGACAACCACAGTGGTGGCGGTAAATAATGATGATTTTAAATTTAAAAGAGAAAATAGCGTAGTAGAAAAAAAGCTATCCACGAAACCTATTGACAAATACTGCAAAGATATAATTCAAGATATAGAAAAGAGTAGCAAAGTCATAGATAGTCACGTAAAACAGTTTAATAATTCGAGATTTGAAAGCGATAAGCTTGTGGAGCAGTTGCAGGCCGTCGATAAATTGAACGAATTAGTCAATTTCAAGGGTGAAATACCAGAAGAAACTTTAAAGGAATTGAATAATAATTTCAAAGTTTTGACTGATCAAGTTCTAGATACCGCCCCGACGAGAAAACGATCTGTGTCAGGGAGAAGAAATTCTAGGAATAATCTGCTTGGAGATTCGAATTTGAGCAACCAGGATTTATTAGATGATTTACTGGGAAAGAAATGA
Protein
MSNHSIASKDRYVTQRVLSAKTHRVKQLQNQLADAHYHLQELSNENRVLRAMQKKQEIALQRYENSNAELPQVLNSHNEEIRIQQSKYKQLKQQYRELTQRMKEKDMQLQQLRDEHQHLLDLSKDRNLLEREKLQAEVTELSAKVQQQNETISMLQRRIALEAKNFKHQLQQEMNKHKDTRHDLDLAIVNADKLSSIIEMKEKMLSTAASRGVKSPTKGPTLNVTRPISRHKLDASTKLNDTSLNVDQNILAKLCENSRSLSSALSHDEDTSSSVEPRSRYARSRTSSTSTRSTPQTRVSSKSSDEMIELAKTVQDGMADLAIFDKDLATENSTPEEMQKRMEAMKIELINKIKNNDEPAPKKASALRRKSTEESIEEQIIESDKSDRPKSRGRRHSNVSFLESSQIESTTTVVAVNNDDFKFKRENSVVEKKLSTKPIDKYCKDIIQDIEKSSKVIDSHVKQFNNSRFESDKLVEQLQAVDKLNELVNFKGEIPEETLKELNNNFKVLTDQVLDTAPTRKRSVSGRRNSRNNLLGDSNLSNQDLLDDLLGKK

Summary

Pfam
PF15619   Lebercilin
Interpro
IPR026188   Lebercilin-like        + More
IPR028933   Lebercilin_dom       

Ontologies

GO

Topology

Length:
553
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00245
outside
1  -  553
 
 

Population Genetic Test Statistics

Pi
221.603869
Theta
176.033138
Tajima's D
0.752237
CLR
0
CSRT
0.580120993950302
Interpretation
Uncertain
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