Silkworm Genome Informatics Database

Gene

KWMTBOMO12805

Annotation

WD_repeat?_SAM_and_U-box_domain-containing_protein_1_[Papilio_machaon]

Location

Bomo_Chr21(-):15251591-15257185 View in EpiBrowser

Location in the cell

Cytoplasmic Reliability : 1.372

CDS

ATGCTGCGTTCGTTGTGTGTGCCGAGCGGAAGCGGGGAGGGCGGAGAGACGGGGGGCGGCGGGGTGAGGGGGGCGCGCGTGTCTCCGCACCGGCCCCCTCTCCTCTTGCTCGCCACCGACGACGGCCTCGCTCCACTCTGGAGTCTCGCCTCCTCGGACCCTGCACCCAGACAGTTACCTACTTACATACCACATATATGTATAAATAATATAATTGTGTACACGGGTCACAGCGAGGCGGTGACGTGCTGCGCGTGGTCGGCGGACGGGCGGCTGCTGGCGACGGGCGCGGCCAGCGGGGAGCTGCGCCTGCACACCCCGCCCCCCGCCGCCCTCACCCTGCACCATGACTCGCACGCGCACGATCTTGGGGTTCAGAGTTGTGATTTCGCATCTCCGGCAGCCATACTGGAGCTGCCACAAGATGGTTATTTTCTCGCAACGGGTGGTAACGATTCCCTACTCAAACTTTGGCTCATTCGGCTAAATGAGGATGGGGACCGGGCGGAGGTGCGGCTGGTGCGGCAGGTGGAGGCGCACGGCGGCGGCGTGTCGTGCGTGCGGTGGGGGGGCGCGGGCGCGCTGGTGTCGGCGGGCGCGGACCGGTGGGCGCGCGTGTGGCGCGGCGCGGGGCTGGAGGCGCACGCGGCGGCGGAGGGGAGCGGCGCGGGGGGCGCGCTGGCGGCCGCGCTGTTCGCCGACCTGCTGGCGGTGGGCTCGCTGGGCGGCGCGCTGGCGGTGTGGCGGGTGCCGCCGCCCGCTGCCCGCGCCGAAGACGACTGCACTGCGCCCAGGTTCTGGGGACTCGCCGGGGTAACGCGATGGCTTCATGAGTACATCATACATCCGCCCGGCGCGCTTATGACGCACGAAGAGAAAACCGTGTTGATGAGAAGAGCCCAGGACCTTGCGCTCACCGGAGCTCAGCTGCTCGATGTGCCGGTCGATGAACTCCTCGACGACCTCGGGTATGGTGAAGCGGCGCCGGAAGACGGACAGGAGTGCAGCAAGCAGGAGCTGGAGCGAGCGGAGACCCGCCCGAGGCTGCGCGCTGAGCTCGACTGGTTGAGGACCGATACTACTCTTTTGCCGAGCGCGGCGGCTCCGCACCGGCTGCGCTGTCCGCTGACGCACCGCGTGCTGCGTGAGCCGGCCCGTGCGCCCGACGGCTTCACCTACGAGCGCGCCGCCATCGTGCAGTGGTTCATCGCAGCCGAAGGCGCTGTGTCTCCGGTGTCTGGTCGGCGCATGCGCAGTGTCCTCGTGTCGCCCAACTACTCTCTGCGCGACCAACTCCGGACCTTCATACAGGAGAACTCATCAGTGTAA

Protein

MLRSLCVPSGSGEGGETGGGGVRGARVSPHRPPLLLLATDDGLAPLWSLASSDPAPRQLPTYIPHICINNIIVYTGHSEAVTCCAWSADGRLLATGAASGELRLHTPPPAALTLHHDSHAHDLGVQSCDFASPAAILELPQDGYFLATGGNDSLLKLWLIRLNEDGDRAEVRLVRQVEAHGGGVSCVRWGGAGALVSAGADRWARVWRGAGLEAHAAAEGSGAGGALAAALFADLLAVGSLGGALAVWRVPPPAARAEDDCTAPRFWGLAGVTRWLHEYIIHPPGALMTHEEKTVLMRRAQDLALTGAQLLDVPVDELLDDLGYGEAAPEDGQECSKQELERAETRPRLRAELDWLRTDTTLLPSAAAPHRLRCPLTHRVLREPARAPDGFTYERAAIVQWFIAAEGAVSPVSGRRMRSVLVSPNYSLRDQLRTFIQENSSV

Uniprot

A0A3S2NEA7 A0A194Q3Y1 A0A212ESZ3

Pubmed

26354079 22118469

EMBL

RSAL01000167 RVE45249.1 KQ459562 KPI99719.1 AGBW02012675 OWR44615.1 + More

Proteomes

UP000283053 UP000053268 UP000007151

Pfam

PF00400 WD40 + More
PF04564 U-box

Interpro

IPR019775   WD40_repeat_CS        + More
IPR036322   WD40_repeat_dom_sf
IPR020472   G-protein_beta_WD-40_rep
IPR017986   WD40_repeat_dom
IPR001680   WD40_repeat
IPR015943   WD40/YVTN_repeat-like_dom_sf
IPR011044   Quino_amine_DH_bsu
IPR003613   Ubox_domain
IPR013083   Znf_RING/FYVE/PHD

SUPFAM

SSF50978 SSF50978 + More
SSF50969 SSF50969

Gene 3D

2.130.10.10 3.30.40.10

ProteinModelPortal

A0A3S2NEA7 A0A194Q3Y1 A0A212ESZ3

PDB

6FT6 E-value=2.04913e-09, Score=150

KEGG

101745180 no KO assigned | (RefSeq) vegetative incompatibility protein HET-E-1-like

GO

GO:0004842 GO:0016567 GO:0005515 GO:0003676 GO:0015074 GO:0030429 GO:0004003 GO:0005634 GO:0006289 GO:0016286

Length:

442

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.6059

Exp number, first 60 AAs:

0.00025

Total prob of N-in:

0.00488

outside

1 - 442

Pi

6.561906

Theta

11.250307

Tajima's D

-0.732522

CLR

0.347909

CSRT

0.195790210489476

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics