Silkworm Genome Informatics Database

Gene

KWMTBOMO12803

Annotation

PREDICTED:_uncharacterized_protein_LOC106720343_[Papilio_machaon]

Location

Bomo_Chr21(-):15239971-15245815 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.487

CDS

ATGACAAAGCCGCGCACACGTCGTCAGTCTCGTCGACAATCCGAGTATTTCGAACCGACAGAGGACGATTCTTCCCCGCCGCCGACTGCATCGGGAAACATTTCCGTCAACGACATGGTTGCCATGATGTCTACGTGGCAACGCAACCAAGAGGAAACGTTTGAGAAACTTCTACATACAGTTCTCAACCAATCGCACCGGTCATCGCCGCCGCCCGCTCAACCTGCACTTGGAAACTTCGCCTCGTGCAAGGCTCGCTACAGCGGAGCGCCAGACGAATCACTTGACGGATTTATAGACGCCGTAGAGGCCTACAAGGAATGTGCAAACGTAAGCGAAACTAATGCACTACGTGGGTTGTCAATGTTGTTAACTCATGAAGCCGCGACATGGTGGCAAGGAGTTAAGACCACCATGAACAAGTGGGACCACGCCCTCACATCCCTAAGAGGTGCGTTTGGTGATAGCCGACCTCCACATCGTATATACAAGGAGCTGTTCGCCAACCCACAAAAAGCAAGTGAGAAAACAGAACTCTTCATCTCTAAAACTCGAGCGCTACTATCACGTCTGCCAAAGGACGATCTGACAACCAAAGTACAGATGGACATGGTGTATGGACTACTACATAGTAAAATACGCGAGCGTTTGAGAAGAGAGGAGATTGACACATTTGACACGCTACTCAGAAAGTCTAGAGAGATAGAAGAATCTTGTGACGAGAGTCTATCAACTAGTGGCCTTCAGAGCAAACTGCGCCAACGCCAGTTTCCACCGCCTCGTCACGCCGCAAGCATCGCCGCTGTCCAGGGGTCAACGACCGCGCCACCACTACCACCGCAGAGCGCGCCTAAGCCGCCTGCGCCCGCCGTTGAGTCCAGCGCCCACGGCACCTATCGCCGTTCTCTTCGCTGCTCCGTGGTGCCGCCCCCACCGTCGTCTCCACAACCCCACGGCTCTTCTACTCAGTTCGTGAACGCCAGACGTCGATATTGTTTCTATTGCAAGAACTATGGACATACACGTGAAGAGTGTCGTAGGTTAGCAGCTAAAGGCAGACAGGACATCGATAACGCCGCCGACCCCGTCCCGTCGTGTTACGGATGCAACGAGAAAGGTGTCACTCGATCACAGTGTGCTAAATGCAATTCGGACTTCTCTGCGTGTGAATACGACGGTCCGAAAGGCGCGCTGATGGGAATTTACGGTACAAGAACGACCACATGTTCGAACATTTCTCTGTCGACTCTTGACTCAACTAATTTAGACGCTCATCCACAAGTGCCAGACACTTGTCAATCACAACGGAGACCGATTCTAGGAGTGGAAATTCTAGGAGTAAGGGGTACCGCACTATTGGATACAGGTGCTAAAGGGTGTATTGCGGGTGCTTCCTTATATCAGGTGTTGCTTAAACATAATCATCCCTGCCAAGAAACCACTAAACGCGTTCGTCTCGCTGATGGCTCCGTGCAGATTCGTGAGTTGTTGGTTACTAACCTGCATGTGAAAATGAAAAATAAACTGCTATGTTTGGAGTTCATTATTTTTCCAGAGACCAAATCCAATGATACTATTCTTGGTATGGATTTTATTGCCTCAGCGGGTATGGTGATTGATTTCGCTGCTTCAATTTGGTATTTCTCTGGGGATGAGGTGACTTACCCATTGGAATTTGAACTTTCCAGACCATGCGTGTCCGTATCCTCTGCAGATTTCCTACGTGAAGAGGAAGGAGTTATGCTGCATCCTAAGGAGAGACTGCTGTTGTCCGACTTTCTGAAACAGAACGAAGACCTGTTCGAACCAGGGGGAGGGCCGACTCCGTACGCAGAGCATCACATCGACACCGGCGATAACGCTCCTATTGCCGTTCCACCGTATAGGCTCACTCCAGCAAAAAGAGAGGTGATGAAGGCAGAGTTGGAGAAAATGTTAGCTGACGACGTGATCGAAGAGTGTGAGTCTGCGTGGTCTGCGCCTGCTCTTCTTGTCCCGAAGAAGGACGGATCTTTCAGATTTTGCGTCGACTACCGTCGTCTTAATGCGATTACTAAGACCGACAGTTATCCAATTCCCTTAATCGATGATTTATTGCAGATGACTAGACGGGACTGTCACATGTCCACCATTGACCTGCGCGCCGGATATTGGCAGGTCAATGTAGCTGAAAAAGACAGAGACAAAACCGCTTTTATAAGTCCTTTTGGTACGTATAGGTTCAAGCGCATGCCGTTCGGCTTAAAGAACGCACCGTCTACCTTCCAGCGACTCATCGATCGTTTCCGCTCAAGCTCGTCGCTGCAGGACATCTTTCTGCTGGCTTATTTGGACGACCTCTTATTGATTACACAGGGAAGCTTTCAAGACCACCTTCAGGACCTCGACAAGGTGTTTGACAGACTGCGTCACTTTGGACTCCACGCGAACCGCGCCAAATGTCACTTTGCTCGCCAAGAGGTAACATACTTAGGCCATGTGATCACACCCAAAGGAATCAAGCCGGATAGCACCAAAGTCGACGCCGTCCTGAAAATGAAGGAACCGCACAATCTCAAACATTTGAAATCATTTTTACAGACCTGTTCCTGGTTTAGGAAATTCATTCCTGACTTCTCGCGTATTGCTGAACCTCTGACGAAACTTACCCGCAAAAACGAAGCGTGGACCTGGGGTGAAGCACAACAACGCGCCTTCGACCTGCTAAAGAGTAAGCTTACTAGCGCTCCTATTTTGATACAGGCCGACTACACTCAGCCCTTCTTGCTGCGCACCGACGCCAGCAATTATGCTATAGGGGCTGCACTGTTACAAGGTAACAATAACAATGAAAAACCAATCGAATACGCCAGCAGACTTCTGACGTCAGCCGAGAGGAATTACTCTACCACCGAGCGGGAAGCGCTCGCAGTCGTCTGGGCAGTGGAAAAGTTCAGGGGATACATTGATGGCCATCTATGCATAGTCAAAAGTGACCACCAGCCACTTAAGTGGTTGCTTACACTCAAGTCCCCAAGTGGTCGTCTCATCCGATGGGCACTAAAACTCCAGGCGTTTGATCTCAAGATAGAATACTCTCCAGGTAAAGTTAATACCTTGGCTGATACTTTGAGTCGACCTACCTGTGACGGTACCAACGATTGCGAAGTGTGCTCCGTGACCGTCGACTACCCTCAAGCACTGCCGAGCCAGCTACGAGCCGAGCAGCTTGAAGATCCAGAAGTGGCTAAAATTATACAAGACCTAGAAAGCGTAGACGAACTTACCTCTACTCGGTGGCTGGAACGTGGATATGTACTGCAGCAGGGCGTGCTATACCGTTATGATCCAGATAACGACTCTGAAGAAGCGCAGATGGTAGTGCCAATTTCAAAAAGGAAAGAAATTTTAAAGTCGTTTCACGATTCGCCAACTGCAGGCCACCAGGGTATTGAGCGGACTCTACAACGCATCCGTGAGCACTTCTTTTTTCCCGGAATGCGTCGTTACGTCACAGAGTACCTAAAGAACTGTGTGGACTGTCTCAGGTATAAAGCCGCAAACCAGAAACCAGCTGGTCTCCTCCAGACACCCGTCCTCCAACAAAGATCTGAAGTCCTGGCGATGGATCTTTTCGGCCCCCTGCCTGAAGGAGATCAAGGACAACGTTGGGTCCTTATTGTTGAAGACGTAGCTACCAGGTGGGTGGAGCTGTTCTCGCTTGTGGAGGCCACAGCAGAAAATTGCGCCAAGCTTCTTATAGAGGAATACTTCCTCAGATATGGATTGCCACGCCGAGTTGTGTCCGACAACGGGACTCAATTCATATCCTCAGTGATGCAACTTTCAATGTTTATTTTAGGTATTAAACAAGAGCTCATCCCAGTTTACCACCCTGAGGCTAATCCCGTCGAGCGCAAGAATCGGGATCTCAAAGTACAACTGTCTTTATTAGTAAAAACCGAGCACCGGAACTGGCCTAAATATCTTGCCCATGTTCGGTTCGCTATGAACAGCGCCGTCTGTTCCACCACTGGGAAGACTCCAGCCTTTTTAACGTTCGCACGCGAGCTTCGCACACCTTATGAGATGCACCATGATTTACGTGCAATATTAGATAAAGAGAACTTCGTTCCTTCGGCCACTCCATATTTGCGCTCCTTCATACGTACCCTACAGGATATTCGTGATCGTGTTGAGAAGAAGCAAGATCAGCGTAAGGAGATAGGTGATACTGCACGCCGTCCTATGCCTCCTTATAAAGAAAATGATTTGGTCTTGGTCAAAACCCACGCACTGAGCAATGCCTCGAAAGGAACTACCAGCAAATTCATGCCAAAACGAGATGGCCCATATCGCGTTAAACGTGTTATAACTCCCACTACCTTTATACTCGCTAATTTGACTGACGACGACACTGTCATAGGAAAATACCACAGTTCGGACTTGACCCCCTTTACTCAAACGTCTGATACCACACCCATTGTTCCAAAGAAAGGTAGGGGTAGGCCGCGTATTAAACCGTCAGATACCAAGTTGGACCCGGGACGTGCTACCAACTTGGAGGGGGAGCCTATAACGCGACGGGACATTTCCGAACGCACCCTTAATTCCCATCAGCGCGTTCCTCGGAACGCGCCTCAACCGGCCGTGATTGGTCCGCGACCGCGCCGCCATCGCAAGCCGCCACTGCGCTTGCGCATGATGGACTGA

Protein

MTKPRTRRQSRRQSEYFEPTEDDSSPPPTASGNISVNDMVAMMSTWQRNQEETFEKLLHTVLNQSHRSSPPPAQPALGNFASCKARYSGAPDESLDGFIDAVEAYKECANVSETNALRGLSMLLTHEAATWWQGVKTTMNKWDHALTSLRGAFGDSRPPHRIYKELFANPQKASEKTELFISKTRALLSRLPKDDLTTKVQMDMVYGLLHSKIRERLRREEIDTFDTLLRKSREIEESCDESLSTSGLQSKLRQRQFPPPRHAASIAAVQGSTTAPPLPPQSAPKPPAPAVESSAHGTYRRSLRCSVVPPPPSSPQPHGSSTQFVNARRRYCFYCKNYGHTREECRRLAAKGRQDIDNAADPVPSCYGCNEKGVTRSQCAKCNSDFSACEYDGPKGALMGIYGTRTTTCSNISLSTLDSTNLDAHPQVPDTCQSQRRPILGVEILGVRGTALLDTGAKGCIAGASLYQVLLKHNHPCQETTKRVRLADGSVQIRELLVTNLHVKMKNKLLCLEFIIFPETKSNDTILGMDFIASAGMVIDFAASIWYFSGDEVTYPLEFELSRPCVSVSSADFLREEEGVMLHPKERLLLSDFLKQNEDLFEPGGGPTPYAEHHIDTGDNAPIAVPPYRLTPAKREVMKAELEKMLADDVIEECESAWSAPALLVPKKDGSFRFCVDYRRLNAITKTDSYPIPLIDDLLQMTRRDCHMSTIDLRAGYWQVNVAEKDRDKTAFISPFGTYRFKRMPFGLKNAPSTFQRLIDRFRSSSSLQDIFLLAYLDDLLLITQGSFQDHLQDLDKVFDRLRHFGLHANRAKCHFARQEVTYLGHVITPKGIKPDSTKVDAVLKMKEPHNLKHLKSFLQTCSWFRKFIPDFSRIAEPLTKLTRKNEAWTWGEAQQRAFDLLKSKLTSAPILIQADYTQPFLLRTDASNYAIGAALLQGNNNNEKPIEYASRLLTSAERNYSTTEREALAVVWAVEKFRGYIDGHLCIVKSDHQPLKWLLTLKSPSGRLIRWALKLQAFDLKIEYSPGKVNTLADTLSRPTCDGTNDCEVCSVTVDYPQALPSQLRAEQLEDPEVAKIIQDLESVDELTSTRWLERGYVLQQGVLYRYDPDNDSEEAQMVVPISKRKEILKSFHDSPTAGHQGIERTLQRIREHFFFPGMRRYVTEYLKNCVDCLRYKAANQKPAGLLQTPVLQQRSEVLAMDLFGPLPEGDQGQRWVLIVEDVATRWVELFSLVEATAENCAKLLIEEYFLRYGLPRRVVSDNGTQFISSVMQLSMFILGIKQELIPVYHPEANPVERKNRDLKVQLSLLVKTEHRNWPKYLAHVRFAMNSAVCSTTGKTPAFLTFARELRTPYEMHHDLRAILDKENFVPSATPYLRSFIRTLQDIRDRVEKKQDQRKEIGDTARRPMPPYKENDLVLVKTHALSNASKGTTSKFMPKRDGPYRVKRVITPTTFILANLTDDDTVIGKYHSSDLTPFTQTSDTTPIVPKKGRGRPRIKPSDTKLDPGRATNLEGEPITRRDISERTLNSHQRVPRNAPQPAVIGPRPRRHRKPPLRLRMMD

Uniprot

A0A3B1JJM2 A0A139W930 A0A224Z6Q8

Pubmed

25329095 18362917 19820115 28797301

EMBL

KQ972733 KXZ75794.1 GFPF01011317 MAA22463.1

Proteomes

UP000018467 UP000007266

Pfam

PF17919   RT_RNaseH_2        + More
PF17921   Integrase_H2C2
PF03732   Retrotrans_gag
PF00665   rve
PF00078   RVT_1
PF17917   RT_RNaseH

Interpro

IPR000477   RT_dom        + More
IPR041588   Integrase_H2C2
IPR036397   RNaseH_sf
IPR021109   Peptidase_aspartic_dom_sf
IPR005162   Retrotrans_gag_dom
IPR012337   RNaseH-like_sf
IPR001969   Aspartic_peptidase_AS
IPR001584   Integrase_cat-core
IPR041577   RT_RNaseH_2
IPR001878   Znf_CCHC
IPR036875   Znf_CCHC_sf
IPR003034   SAP_dom
IPR041373   RT_RNaseH

SUPFAM

SSF50630   SSF50630        + More
SSF53098   SSF53098
SSF57756   SSF57756

Gene 3D

2.40.70.10 3.30.420.10

ProteinModelPortal

A0A3B1JJM2 A0A139W930 A0A224Z6Q8

PDB

4OL8 E-value=3.4507e-68, Score=662

KEGG

101740708 no KO assigned | (RefSeq) uncharacterized LOC101740708

GO

GO:0015074 GO:0004190 GO:0003676 GO:0008270 GO:0005634 GO:0003964 GO:0006508 GO:0030429 GO:0004003 GO:0006289 GO:0016286

Length:

1563

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.10785

Exp number, first 60 AAs:

0.00015

Total prob of N-in:

0.00473

outside

1 - 1563

Pi

1.845747

Theta

10.733545

Tajima's D

-1.439318

CLR

27.586213

CSRT

0.0660466976651167

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree