SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO12797
Annotation
reverse_transcriptase_[Danaus_plexippus]
Location in the cell
Mitochondrial   Reliability : 1.348 PlasmaMembrane   Reliability : 1.307
 

Sequence

CDS
ATGCTGCCAGCTGCCTCGACCTTGCCCTGGTCCGTGATAGGGGGGGCGCTGGAACGACACGGAGTGCCCCCCTACCTTCGCCGGCTGGTGGGTTCCTACTTGGAGGACAGATTAGTCACGTGTACCGGACACGGTGGGATCGTGCACCGGTTCCCGGTCGTGCGCGGTGTTCCACAGGGGTCGGTGCTCGGCCCTCTTTTGTGGAATATCGGGTATGACTGGGTACTGAGGGGTGCCCTCCTCCCGGGCCTAAGCGTAATCTGTTACGCAGACGACACGTTGGTCGTGGCCCGGGGGGGGAGTTTTTCTGAGTCTGCCCGTCTTGCTACCGCTGGGGTAGCGCATGTCGTCGGCAAAATCAGGAGATTGGGCCTCGACGTGGCGCTCAGTAAATCCGAGGCCATGTGGTTCCACAGGCCCCGGAGAGTGCCACCTGTCGATGCCCATATCGTGGTTGGAGGCGTCCGTATCGGGGTCGGGGTGCAGTTGAAGTACCTCGGCCTCATTCTGGACAGTCGTTGGACCTTCCGTGCTCACTTTCAAAATCTGGTCCCTCGTCTGGTGGGGGTGGCTGGCGTGTTAAGCCGGCTTCTTCCCAACGTTGGGGGGCCTGACCAGGTGACGCGCCGTCTCTATACAGGGGTGGTGCGATACGGGGCGCCCGTGTGGGGCCAGTCCCTGGCCGTGGGGGTAGCGAAGCTGCTGCAACGGCCGCAACGCACCATCGCGGTCAGGGTCATCCGCGGCTATCGCACCATCTCCTTCGAGGCGGCGTGTGTACTGGCTGGGACGCCGCCTTGGGTTCTGGAGGCGGAGGCGCTCGCCGCTGACTATCAGTGGCGGGCTGACCTTCGTGCACAGGGCGTGGCACGTCCCAGCCCCAGTGTGGTCAGAGCGCGGAGGGCCCAATCTCGGCGAGGACGCCTCACTTTCCGGCTCACGCAGGTGCTCACTGGGAATGGTTGCTTCGGTGAGTTCCTGCACCGGATCGGAGCCGAGCTGACGGCAGAGTGCCACCATTGTGGTTGCGACTTGGACACGGCGGAGCACACGCTCGTCGCCTGCCCCGCATGGGAGGGGTGGCGCCGTGTCCTTGTCGCAAAAATAGGAAACGACTTGTCGTTGCCGGGTGTTGTGGCATCAATGCTCGGTGACGACGAGTCGTGGAAGGCGATGCTCGACTTCTGCGAGTGCACCATCTCGCAGAAGGAGGCGGCGGGGCGCGTGCGGGACGCGCAGGCCCGCCGCCGTCGAGCGGGGGCCAGGGAGGCGGATTTCGCCCAAGCCCTGGCCCTCTAA
Protein
MLPAASTLPWSVIGGALERHGVPPYLRRLVGSYLEDRLVTCTGHGGIVHRFPVVRGVPQGSVLGPLLWNIGYDWVLRGALLPGLSVICYADDTLVVARGGSFSESARLATAGVAHVVGKIRRLGLDVALSKSEAMWFHRPRRVPPVDAHIVVGGVRIGVGVQLKYLGLILDSRWTFRAHFQNLVPRLVGVAGVLSRLLPNVGGPDQVTRRLYTGVVRYGAPVWGQSLAVGVAKLLQRPQRTIAVRVIRGYRTISFEAACVLAGTPPWVLEAEALAADYQWRADLRAQGVARPSPSVVRARRAQSRRGRLTFRLTQVLTGNGCFGEFLHRIGAELTAECHHCGCDLDTAEHTLVACPAWEGWRRVLVAKIGNDLSLPGVVASMLGDDESWKAMLDFCECTISQKEAAGRVRDAQARRRRAGAREADFAQALAL

Summary

EMBL
AB090825    BAC57926.1    AB078935    BAC06462.1    AB078930    BAC06454.1    + More
AB078929    BAC06452.1    AB078931    BAC06456.1    KZ149896    PZC78733.1    KZ150386    PZC71062.1    RSAL01000481    RVE41577.1    LBMM01012027    KMQ86470.1    D85594    BAA19776.1    LBMM01005948    KMQ91066.1    LBMM01006954    KMQ90166.1    LBMM01005733    KMQ91252.1    LBMM01019839    KMQ83438.1    LBMM01006657    KMQ90417.1    LBMM01019838    KMQ83439.1    LBMM01006671    KMQ90407.1    LBMM01004272    KMQ92618.1    LBMM01002052    KMQ95336.1    LBMM01006063    KMQ90967.1    LBMM01006725    KMQ90373.1    LBMM01003988    KMQ92922.1    LBMM01004505    KMQ92346.1    LBMM01008422    KMQ88894.1    LBMM01007036    KMQ90099.1    LBMM01015018    KMQ84954.1    LBMM01003245    KMQ93755.1    LBMM01008682    KMQ88705.1    LBMM01015025    KMQ84953.1    LBMM01004634    KMQ92224.1    LBMM01009527    LBMM01009515    KMQ88059.1    KMQ88067.1    LBMM01008448    KMQ88867.1    LBMM01005216    KMQ91703.1    LBMM01007425    KMQ89740.1    LBMM01002480    KMQ94776.1    LBMM01006496    KMQ90570.1    LBMM01008861    KMQ88580.1    LBMM01014956    KMQ84982.1    GGMR01000779    MBY13398.1    LBMM01014122    KMQ85315.1    LBMM01005465    KMQ91492.1    KMQ94772.1    GGMR01015354    MBY27973.1    LBMM01009738    KMQ87908.1    GFXV01001748    MBW13553.1    GGMR01014195    MBY26814.1    LBMM01021647    KMQ83033.1    ABLF02005203    ABLF02041316    GGMR01015159    MBY27778.1    LBMM01014132    KMQ85305.1    ABLF02004854    ABLF02041317    ABLF02004597    ABLF02041324    LBMM01007659    KMQ89538.1    GALX01004785    JAB63681.1    ABLF02034925    ABLF02015311    ABLF02015320    ABLF02034009    ABLF02043484    ABLF02011238    QOIP01000010    RLU18098.1    GGFJ01001727    MBW50868.1    ABLF02013358    ABLF02013361    ABLF02054869    GGFJ01001369    MBW50510.1    GFXV01002090    MBW13895.1    LBMM01004697    KMQ92167.1    ABLF02041886    GGFJ01001370    MBW50511.1    GGFJ01001439    MBW50580.1    GGMR01004600    MBY17219.1    AB593327    BAK38648.1    ABLF02016435    ABLF02016436    ABLF02064751    GALA01001777    JAA93075.1    GGMR01006838    MBY19457.1    GBXI01013438    JAD00854.1    ABLF02009991    ABLF02009992    ABLF02054952    GECU01032129    JAS75577.1    ABLF02014530    ABLF02018586    ABLF02058000    GFXV01002242    MBW14047.1    KQ972255    KYB24568.1    GGMR01019609    MBY32228.1    ABLF02012448    ABLF02012450    ABLF02012455    ABLF02012460   
Pfam
PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF01553   Acyltransferase
PF07776   zf-AD
PF00096   zf-C2H2
PF03372   Exo_endo_phos
PF00098   zf-CCHC
PF13843   DDE_Tnp_1_7
PF05699   Dimer_Tnp_hAT
Interpro
IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR002123   Plipid/glycerol_acylTrfase       
IPR012934   Znf_AD       
IPR013087   Znf_C2H2_type       
IPR036236   Znf_C2H2_sf       
IPR001878   Znf_CCHC       
IPR036875   Znf_CCHC_sf       
IPR029526   PGBD       
IPR037220   BED_dom       
IPR012337   RNaseH-like_sf       
IPR008906   HATC_C_dom       
SUPFAM
SSF56219   SSF56219        + More
SSF57667   SSF57667       
SSF57756   SSF57756       
SSF53098   SSF53098       
SSF140996   SSF140996       
Gene 3D

Ontologies

Topology

Length:
432
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.0883700000000001
Exp number, first 60 AAs:
0.00266
Total prob of N-in:
0.00208
outside
1  -  432
 
 

Population Genetic Test Statistics

Pi
0.059903
Theta
0.624912
Tajima's D
-1.518585
CLR
1012.735253
CSRT
0.023848807559622
Interpretation
Possibly Positive selection

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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