Silkworm Genome Informatics Database

Gene

KWMTBOMO12789 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA007147

Annotation

Sorting_nexin-27_[Papilio_xuthus]

Location

Bomo_Chr21(-):14571982-14572474 View in EpiBrowser

Location in the cell

Nuclear Reliability : 1.641

CDS

ATGGCTGAGACGGAAACCGATAATAGTAGTGTAGTTAGAGCGGAGAGAAACAACAAGAGCAATAACAATGGCAACGGGCCACGACGCGTTACTATATACAAAACGGAGACCGGGTTTGGTTTTAACGTCCGCGGCCAAGTGTCTGAGGGTGGACAGCTAAGATCGATCAACGGGGAATTGTATGCTCCTCTGCAGCATGTCAGCGCCGTGCTGGAGAACGGAGCGGCTGAACAGGCCGGCATCAGAAAAGGAGACCGAATATTAGAAGTGTGCGTATTCAAACCTCTCCATCAATTTATTGTTTTTAATTTAATATGTTTCAAGAGGTCAAATTTAAATGAAATAAAATTCTTAAAAATAATTCATGCTATCTTCTCTATTCCGATTAACTAA

Protein

MAETETDNSSVVRAERNNKSNNNGNGPRRVTIYKTETGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLENGAAEQAGIRKGDRILEVCVFKPLHQFIVFNLICFKRSNLNEIKFLKIIHAIFSIPIN

Uniprot

H9JCA2 A0A0L7KY25 A0A2J7QZ04 A0A088AQ72 A0A1B6MMW7

Pubmed

19121390 26227816

EMBL

BABH01031646 JTDY01004510 KOB68065.1 NEVH01009080 PNF33818.1 GEBQ01002768 + More
JAT37209.1

Proteomes

UP000005204 UP000037510 UP000235965 UP000005203

PRIDE

H9JCA2

Pfam

PF00595   PDZ        + More
PF00788   RA
PF00787   PX

Interpro

IPR001478   PDZ        + More
IPR036034   PDZ_sf
IPR037831   SNX17/27/31
IPR000159   RA_dom
IPR001683   Phox
IPR037827   SNX27_FERM-like_dom
IPR037833   SNX27_PX
IPR036871   PX_dom_sf

SUPFAM

SSF50156 SSF50156 + More
SSF64268 SSF64268

Gene 3D

3.30.1520.10

CDD

cd06886 PX_SNX27
cd13338 FERM-like_C_SNX27

ProteinModelPortal

H9JCA2 A0A0L7KY25 A0A2J7QZ04 A0A088AQ72 A0A1B6MMW7

PDB

5EMB E-value=1.81039e-24, Score=272

KEGG

101740916 K17936 sorting nexin-27 | (RefSeq) sorting nexin-27

GO

GO:0006886 GO:0035091 GO:0005623 GO:0032266 GO:0007165 GO:0005515 GO:0004190 GO:0006508 GO:0015074 GO:0007264 GO:0048015 GO:0004003 GO:0005634 GO:0006289 GO:0016286

PANTHER

PTHR12431

Length:

130

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.07788

Exp number, first 60 AAs:

0

Total prob of N-in:

0.30005

outside

1 - 130

Pi

2.524358

Theta

13.262796

Tajima's D

-2.28246

CLR

142.705523

CSRT

0.00344982750862457

Interpretation

Possibly Positive selection

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics