Gene

KWMTBOMO12787

Pre Gene Modal

BGIBMGA007148

Annotation

putative_sorting_nexin_[Danaus_plexippus]

Location

Bomo_Chr21(-):14541531-14557764      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.149

CDS

ATGAATGAGGGATTATTAGTGGCCCGGAGGCCTCTCCAGTTTCACCAGGACAGCGTTGTCACGATATTCGTATTTTGTTACAGCAATGGCGTGAACGTGGAAGGCTCGACCCACAGACAAGTGGTGGACCTCATCAAGTCCGGTGGCGACTGTCTCACTCTCACAGTCATTTCAGTCACACAGAGGGAAGCAGAGCGCCTGGAACCATGCGACGACAGCTCAGCTCCGGTGGGAGTTATCGGAGGGGCAGCCAACTCTCGCGCGACGGTCTACCAGCGCTACGACTATACCGACAAGAGATCTCTGCCCGTCTCTATACCGGACTACAGGATCGTCATGGAGAGAAATACCGGCAGGTCGTACATAGCGTTCAATATCCACATGGCCGGGCGGCATCTCTGCAGCAGAAGGTACAGGGAATTCGCGGCCCTACACCAAGTCCTCAGGAAGGAGTTTATCGGATTCAACTTCCCTAAATTACCAGGAAAATGGCCATTTACTTTGAGCGAACAGCAGCTCGACTCGAGGAGGAGGGGGCTAGAACAGTATTTGGAAAAGGTGTGCGCGGTGCGCGTGATCGCGGAGTGCGAGAGCGTGCAGGAGTTCCTGACGGACTGCGACGACAGCTCGAACCCGGCGCCCGTGGAGCTGAAGGTGCTGCTGCCGGACCGCGACGTGGCCACCGTGTCCGTGCTGCGCTCCACGCGCGCCGACCTCGTGTACCGCGCCGTCGCCGACAAGATCCGCCTCGCCGACACGGTGCAGCAGTACTTCTACCTCTTCGAGATCGTCGAGTACAACTTCGAGCGCAAGCTGCAGCCCAACGAGTGTCCGCACTCGCTGTACATACAGAACTACTCGACGGCGTCCAGCAGCTGCCTCTGCATCCGCAAGTGGCTGTTCAACCCGCGCGTCGAGGTGGCGCTGGTGGCGGAAGACCCGCTCGCCGCCAACTTTATATTTTGGCAGGCGGTGGAGGACGTGAACCGCGGCACGTGCGCGGCCGGCGCCCGGCTCTACCAGCTCAAGGCCATGCAGGAGCCGCGCCGCGCGCACGACTACCTCGCGCTCGCACGCACGCTGCCCGGATACGGACACGTCGCCATCCCGCACCCCACGCTCCGTCTGGCGCTCGGCTGGAGCGGCATCAAGCTGTCGCCGCACGAGGAGGAGGCGCCGGGCGAGGAGTGCGCCGAGGTGCCGTGGAGTTGCGTGCTGGGCTGGGCGCGGGATGATGACGCCACCGCCGTGCGCCTCACCTACGCGCGACCCGACCGCCCGCCGCGTACGCTGCTGCTCTGCACGCCATATTACCAGTTCCTGGCCAACTGCATGGACAGAATAGCGGAGGAGGCGAACTGGGCCGACACCGGCGAGTAA

Protein

MNEGLLVARRPLQFHQDSVVTIFVFCYSNGVNVEGSTHRQVVDLIKSGGDCLTLTVISVTQREAERLEPCDDSSAPVGVIGGAANSRATVYQRYDYTDKRSLPVSIPDYRIVMERNTGRSYIAFNIHMAGRHLCSRRYREFAALHQVLRKEFIGFNFPKLPGKWPFTLSEQQLDSRRRGLEQYLEKVCAVRVIAECESVQEFLTDCDDSSNPAPVELKVLLPDRDVATVSVLRSTRADLVYRAVADKIRLADTVQQYFYLFEIVEYNFERKLQPNECPHSLYIQNYSTASSSCLCIRKWLFNPRVEVALVAEDPLAANFIFWQAVEDVNRGTCAAGARLYQLKAMQEPRRAHDYLALARTLPGYGHVAIPHPTLRLALGWSGIKLSPHEEEAPGEECAEVPWSCVLGWARDDDATAVRLTYARPDRPPRTLLLCTPYYQFLANCMDRIAEEANWADTGE

Uniprot

H9JCA3   A0A2W1BJP9   A0A2A4JPQ8   A0A2H1X270   A0A212EVT3   A0A194QHN5   + More
A0A194RMF2   A0A1E1W3S3   D6WCM1   A0A1A9W7A3   A0A0T6B0Y5   A0A1A9YPL4   A0A1B0BJV6   A0A0K8V6C6   A0A1B0FGJ4   W8BRU8   A0A0A1XLT5   T1P8L1   A0A0L0C433   A0A1W4VEN6   A0A1I8Q1Z1   A0A1I8Q225   F3YD98   A0A0R1EFQ3   A0A0Q5T2V3   W5J429   B4JNS4   A0A2M4AMW2   A0A1W4VS36   X2JIH1   Q179V9   B3MSH0   A0A182GB13   A0A1Q3G1N9   A0A2M4AKK9   A0A182FRX5   B4NDG7   U5ET62   B4M893   Q9W486   B3NSV8   A0A067QUP5   B4R519   B4PZB6   A0A1W4VRD2   A0A3B0KV45   A0A0R3P219   A0A1L8DW53   A0A1L8DW67   A0A3B0KKW3   Q29FS0   A0A182NR24   B4GU14   A0A1B0CP44   A0A182PR47   E2BP99   A0A182QQ63   A0A182XNW7   A0NGX8   A0A182HK15   A0A182V028   B4L1Y9   A0A182K3L7   A0A336KZE7   E0VRI8   A0A182R542   A0A232EYA3   K7IMG5   A0A182LYQ3   A0A182J7H6   A0A1A9VC67   A0A182VWA4   A0A1B0A9W0   A0A1B6MMW7   E2AQK8   A0A182TGU5   F4W983   A0A151I8Z8   A0A158P0R5   A0A195B4Z9   A0A026WE03   A0A1B6D9H9   A0A2H8TDU6   A0A1D2N2Z4   A0A2S2NCM3   A0A087UA66   A0A0A9XQX2   A0A023F4M0   J9K5H9   A0A0M9A6E0   A0A2P6KRG2   T1HFB5   A0A088AQ73   A0A293LWB7   A0A162Q697   V9IIU8   E9GAT1   A0A0P5T7E0   A0A023FNC1  

Pubmed

19121390    28756777    22118469    26354079    18362917    19820115    + More
24495485    25830018    25315136    26108605    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    17994087    17550304    20920257    23761445    17510324    26483478    24845553    15632085    20798317    12364791    14747013    17210077    20566863    28648823    20075255    21719571    21347285    24508170    30249741    27289101    25401762    26823975    25474469    21292972   

EMBL

BABH01031643    BABH01031644    KZ150141    PZC72950.1    NWSH01000878    PCG73746.1    + More
ODYU01012849    SOQ59352.1    AGBW02012143    OWR45567.1    KQ458981    KPJ04450.1    KQ459995    KPJ18510.1    GDQN01009417    JAT81637.1    KQ971317    EEZ97811.1    LJIG01016300    KRT81016.1    JXJN01015632    GDHF01018164    JAI34150.1    CCAG010007466    GAMC01006937    JAB99618.1    GBXI01008227    GBXI01002739    JAD06065.1    JAD11553.1    KA645101    AFP59730.1    JRES01001001    KNC26234.1    BT126259    AE014298    AEB39620.1    AGB95104.1    CM000162    KRK05946.1    CH954180    KQS29763.1    ADMH02002129    ETN58601.1    CH916371    EDV92367.1    GGFK01008798    MBW42119.1    AHN59377.1    CH477344    EAT43038.1    CH902622    EDV34725.1    JXUM01051801    JXUM01051802    JXUM01051803    JXUM01051804    KQ561705    KXJ77761.1    GFDL01001343    JAV33702.1    GGFK01007973    MBW41294.1    CH964239    EDW82873.2    GANO01002913    JAB56958.1    CH940653    EDW62369.2    BT010067    AAF46072.2    AAQ22536.1    EDV45927.1    KK852913    KDR13897.1    CM000366    EDX17168.1    EDX01083.1    OUUW01000018    SPP89221.1    CH379065    KRT07243.1    GFDF01003422    JAV10662.1    GFDF01003406    JAV10678.1    SPP89220.1    EAL31509.2    CH479190    EDW26034.1    AJWK01021413    AJWK01021414    AJWK01021415    GL449553    EFN82519.1    AXCN02001481    AAAB01008987    EAL38656.3    EGK97664.1    APCN01000814    CH933810    EDW07710.1    UFQS01001307    UFQT01001307    SSX10240.1    SSX29928.1    DS235478    EEB15994.1    NNAY01001605    OXU23446.1    AXCM01001932    GEBQ01002768    JAT37209.1    GL441777    EFN64276.1    GL888002    EGI69265.1    KQ978323    KYM95141.1    ADTU01001022    ADTU01001023    KQ976598    KYM79578.1    KK107293    QOIP01000005    EZA53259.1    RLU22397.1    GEDC01014947    JAS22351.1    GFXV01000466    MBW12271.1    LJIJ01000282    ODM99424.1    GGMR01002345    MBY14964.1    KK118950    KFM74255.1    GBHO01020512    GDHC01004181    JAG23092.1    JAQ14448.1    GBBI01002430    JAC16282.1    ABLF02036967    KQ435739    KOX76863.1    MWRG01006540    PRD28888.1    ACPB03021649    GFWV01006410    MAA31140.1    LRGB01000389    KZS19383.1    JR047453    AEY60421.1    GL732537    EFX83312.1    GDIP01129944    JAL73770.1    GBBK01002329    JAC22153.1   

Proteomes

UP000005204    UP000218220    UP000007151    UP000053268    UP000053240    UP000007266    + More
UP000091820    UP000092443    UP000092460    UP000092444    UP000095301    UP000037069    UP000192221    UP000095300    UP000000803    UP000002282    UP000008711    UP000000673    UP000001070    UP000008820    UP000007801    UP000069940    UP000249989    UP000069272    UP000007798    UP000008792    UP000027135    UP000000304    UP000268350    UP000001819    UP000075884    UP000008744    UP000092461    UP000075885    UP000008237    UP000075886    UP000076407    UP000007062    UP000075840    UP000075903    UP000009192    UP000075881    UP000009046    UP000075900    UP000215335    UP000002358    UP000075883    UP000075880    UP000078200    UP000075920    UP000092445    UP000000311    UP000075902    UP000007755    UP000078542    UP000005205    UP000078540    UP000053097    UP000279307    UP000094527    UP000054359    UP000007819    UP000053105    UP000015103    UP000005203    UP000076858    UP000000305   

PRIDE

H9JCA3    X2JIH1   

Pfam

PF00788   RA        + More
PF00787   PX
PF17820   PDZ_6
PF00595   PDZ
PF18116   SNX17_FERM_C

Interpro

IPR037831   SNX17/27/31        + More
IPR036034   PDZ_sf       
IPR036871   PX_dom_sf       
IPR000159   RA_dom       
IPR029071   Ubiquitin-like_domsf       
IPR001683   Phox       
IPR037833   SNX27_PX       
IPR001478   PDZ       
IPR041489   PDZ_6       
IPR037827   SNX27_FERM-like_dom       
IPR037835   SNX27_RA       
IPR040842   SNX17/31_FERM       

SUPFAM

SSF50156   SSF50156        + More
SSF64268   SSF64268       
SSF54236   SSF54236       

Gene 3D

3.30.1520.10    

CDD

cd06886  PX_SNX27
cd13338  FERM-like_C_SNX27
cd01777  SNX27_RA

ProteinModelPortal

H9JCA3   A0A2W1BJP9   A0A2A4JPQ8   A0A2H1X270   A0A212EVT3   A0A194QHN5   + More
A0A194RMF2   A0A1E1W3S3   D6WCM1   A0A1A9W7A3   A0A0T6B0Y5   A0A1A9YPL4   A0A1B0BJV6   A0A0K8V6C6   A0A1B0FGJ4   W8BRU8   A0A0A1XLT5   T1P8L1   A0A0L0C433   A0A1W4VEN6   A0A1I8Q1Z1   A0A1I8Q225   F3YD98   A0A0R1EFQ3   A0A0Q5T2V3   W5J429   B4JNS4   A0A2M4AMW2   A0A1W4VS36   X2JIH1   Q179V9   B3MSH0   A0A182GB13   A0A1Q3G1N9   A0A2M4AKK9   A0A182FRX5   B4NDG7   U5ET62   B4M893   Q9W486   B3NSV8   A0A067QUP5   B4R519   B4PZB6   A0A1W4VRD2   A0A3B0KV45   A0A0R3P219   A0A1L8DW53   A0A1L8DW67   A0A3B0KKW3   Q29FS0   A0A182NR24   B4GU14   A0A1B0CP44   A0A182PR47   E2BP99   A0A182QQ63   A0A182XNW7   A0NGX8   A0A182HK15   A0A182V028   B4L1Y9   A0A182K3L7   A0A336KZE7   E0VRI8   A0A182R542   A0A232EYA3   K7IMG5   A0A182LYQ3   A0A182J7H6   A0A1A9VC67   A0A182VWA4   A0A1B0A9W0   A0A1B6MMW7   E2AQK8   A0A182TGU5   F4W983   A0A151I8Z8   A0A158P0R5   A0A195B4Z9   A0A026WE03   A0A1B6D9H9   A0A2H8TDU6   A0A1D2N2Z4   A0A2S2NCM3   A0A087UA66   A0A0A9XQX2   A0A023F4M0   J9K5H9   A0A0M9A6E0   A0A2P6KRG2   T1HFB5   A0A088AQ73   A0A293LWB7   A0A162Q697   V9IIU8   E9GAT1   A0A0P5T7E0   A0A023FNC1  

PDB

4HAS     E-value=6.30603e-40,     Score=413

KEGG

101740916    K17936 sorting nexin-27 | (RefSeq) sorting nexin-27

GO

GO:0005623   GO:0006886   GO:0035091   GO:0007165   GO:0032266   GO:0005769   GO:1990126   GO:0016301   GO:0005515   GO:0005085   GO:0007264   GO:0048015   GO:0004003   GO:0005634   GO:0006289   GO:0016286  

PANTHER

PTHR12431  

Length:

459

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00958999999999996

Exp number, first 60 AAs:

0.00734

Total prob of N-in:

0.00353

outside

1  -  459

 

 

Pi

2.677002

Theta

16.217279

Tajima's D

-1.057055

CLR

2.305545

CSRT

0.125593720313984

Interpretation

Uncertain