Gene

KWMTBOMO12784

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr21(+):14482275-14485852      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.559

CDS

ATGCAGCTCGGTCGCCCACTTAACCGCGAACCAGATACGAGGACCATGGTGGATTGGAAGAAGCTGGGCACGTGCTTAGCTGACACCGCTCCACCAATCCTCCCCTGCGGCCCGGATTCAACTCCATCCCCCGAGGACACAGTCGAATCCATAAACATCTTCACTGATCACGTCTCGACCGCGATCATAAGATCTTCTAAACAAGTCGATGTGGAGGACTGCTTCCACCGCATCAGACTTTCCCCCGAGCTTAGGGATCTCTTAAGAGTCAGGAACGCGGCAATCTGGGCCCACGATCGATATCCCACGGATTCAAACCGGGCTCGGATGCGTCGCCTACAGCGGGAGGTCAAATCCCGCCTAAGCGACGCCTGTAATGAAAATTGGGATAGTTACTTAGAAGAACTCGCGCCCACTCACCAAGCATACTGGCGACTAGCTAGGACCCTCAAGTCCGAAACTATAGCCACTATGCCGCCTCTCGTACGCCCCTCAAGCCAATCACCGGCTTACGATGACGATGACAAGGCAGAGTTGCTGGCCGATGCACTGCAGGAGCAGTGCACCACCAGCACTCAACACGCGGACCCCGATCACACCGAGTTAGTCGACAGGGAGGTCGAGCGCAGAACTTCCCTGCCGCCCTCGGACGTGTTACCCCCCATTACCACTTCCGAGGTTAAGGAGGCGATCGATAACCTGCAACCACGGAAAGCTCCCGGATCCGACGGCATCCGCAACCGCGCGCTTAAATTATTACCAGCCCAACTAATAACGATGTTGGCCACCATTTTAAATGCTGCTATGACGAACTGCATCTTTCCCGCGGCGTGGAAAGAAGCTGACGTTATCGGCATACACAAGCCGGGCAAACCGAAGAACGAAACCGCGAGTTACCGCCCCATCAGTCTCCTCCCGGCGATAGGCAAACTATACGAACGGCTCCTTCGTAAACGCCTCTGGGACTTCGTCGCGTCCAACAAAATATTGATCGACGAGCAGTTTGGGTTCCGCGCCAGACACTCGTGCGTCCATCAAGTGCACCGCCTCACGGAGCACATCTTACTAGGGCTGAATAGGCGGAAACCCATCCCGACAGGAGCCCCCTTCTTCGATATAGCGAAGGCGTTCGACAAAGTCTGGCACAACGGTTTGATATACAAACTGTATAACATGGGAGTGCCAGACAGACTCGTGCTCATCATACGAGACTACTTGTCGAACCGTTCGTTCCAATATCGAGTCGAGGGAACGCGTTTCCGCCCCCGTCACATCACAGCCGGAGTCCCGCAAGGCTCCGCCCTCTCCCCGTTACTATTCAGTTTGCATATCAATGATATACCCCGGTCTCCGGAGACCCATCTGGCGCTCTTCGCCGATGACACCGCCATCTACTACTCGTGTAGGAAGAAGGCGTTGCTTCATCGACGACTTCAGACCGCAGCTACCACCATGGGACAGTGGTTCCGGAAGTGGCGCATCGACATCAACCCCACGAAAAGCACAGCGGTGCTCTTCAAAAGGGGTCGCCCTCCGAACACCACGTTGAGCATCCCTCTTCCGTCTCGGCGCGTCGACACCTCCGCCTCCGCCATTCGCCCAATCACGATGTTCGACCAGCCCATACCGTGGGCACCGAAGGTCAAATATTTAGGCGTCACCCTCGACAGAAGGATGATATTCCGCCCCCATATTAAGACGGTACGCGATCGTGCCGCCTTCATTCTAGGCCGTTTCTACCCGAGGATATGCAGGCGAAGTAAAATGTCCCTTAGAAATAAGGTGACACTCTACAAAACTTGCACACGCCCAGTCATGACCTATGCAAGTGTAGTGTTCGCTCACGCGGCCCGCACTCACTTAAAATCCTTCCAAATTATTCAATCCCGTTTTTGCAGGATAGCCGTCGGAGCCCCGTGGTTCGTCAGGAACGTCGACCTCCATGACGATCTGGACTTAGAGTCCATCAGTAAGTATCTACAGTCGGCGTCGATGCGCCACTTCGATAAAGCGGCACGACACGAGAACCCTCTCATCGTGGCCGCCGGTAACTACATTCCCGATCCTGCGGACAGAATGGAAAGCAGTCGACGTCGCCCAAAACACGTCATCTCGGATCCTCCCGATCCACTAACGGTGCTTCTAGGACTAACTTACGGCCCATCTGATGGTGAGCGGTGA

Protein

MQLGRPLNREPDTRTMVDWKKLGTCLADTAPPILPCGPDSTPSPEDTVESINIFTDHVSTAIIRSSKQVDVEDCFHRIRLSPELRDLLRVRNAAIWAHDRYPTDSNRARMRRLQREVKSRLSDACNENWDSYLEELAPTHQAYWRLARTLKSETIATMPPLVRPSSQSPAYDDDDKAELLADALQEQCTTSTQHADPDHTELVDREVERRTSLPPSDVLPPITTSEVKEAIDNLQPRKAPGSDGIRNRALKLLPAQLITMLATILNAAMTNCIFPAAWKEADVIGIHKPGKPKNETASYRPISLLPAIGKLYERLLRKRLWDFVASNKILIDEQFGFRARHSCVHQVHRLTEHILLGLNRRKPIPTGAPFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDYLSNRSFQYRVEGTRFRPRHITAGVPQGSALSPLLFSLHINDIPRSPETHLALFADDTAIYYSCRKKALLHRRLQTAATTMGQWFRKWRIDINPTKSTAVLFKRGRPPNTTLSIPLPSRRVDTSASAIRPITMFDQPIPWAPKVKYLGVTLDRRMIFRPHIKTVRDRAAFILGRFYPRICRRSKMSLRNKVTLYKTCTRPVMTYASVVFAHAARTHLKSFQIIQSRFCRIAVGAPWFVRNVDLHDDLDLESISKYLQSASMRHFDKAARHENPLIVAAGNYIPDPADRMESSRRRPKHVISDPPDPLTVLLGLTYGPSDGER

Uniprot

Q9XXW0   Q93137   Q9BPQ0   A0A0N1PFV1   O96546   A0A1Y1NA23   + More
A0A139WA11   A0A139W8G9   V5GNJ2   V5GNF3   A0A2S2PR14   J9KKL3   Q07995   A0A2S2QEE0   A0A3N5Z7I3   A0A023EYS8   A0A023EZE6   A0A2H8U0H5   X1WLB2   A0A224XF24   A0A2J7R7D0   A0A023F6S4   A0A2S2PPK8   A0A2J7R8R8   J9KC83   A0A2J7PDM0   A0A2S2Q352   A0A2S2Q383   A0A2M4BEF4   A0A2M4BEZ9   A0A2S2NGV8   J9M522   A0A2M4BDA5   A0A2M4BD66   A0A2M4BD62   J9KCZ4   A0A0L0CBP5   A0A1Y1LKN6   A0A069DZC5   A0A224XI99   A0A224X6S1   A0A224X6U5   A0A069DW01   A0A2M4CV42   A0A2M4CV52   A0A2S2R9D4   A0A2S2P698   X1WNI2   A0A2S2NPG3   A0A2S2N814   A0A2J7PVX3   A0A2J7QB68   A0A224XB44   A0A2J7RS81   A0A2J7RB54   A0A0J7K4E0   A0A087UGF5   A0A2J7RIW7   A0A2J7R4B7   A0A2J7Q4F7   A0A2J7RM10   A0A023F7D1   A0A2M4BD67   A0A2S2N9P4   A0A2S2PBB4   A0A2S2Q7E7   A0A023F069   A0A069DX78   A0A2J7QUJ9   A0A1L8DIZ6   A0A2J7Q627   A0A2S2N629   A0A2J7Q059   A0A182GMD9   A0A2J7PMP6   A0A2J7Q0Q6   A0A2A4K918   A0A2M4BDV6   A0A2J7RPU2  

Pubmed

10333566    26354079    10380107    28004739    18362917    19820115    + More
8387152    30086797    25474469    26108605    26334808    26483478   

EMBL

AB018558    BAA76304.1    U07847    AAA17752.1    AB055391    BAB21761.1    + More
KQ459265    KPJ02064.1    AF081103    AAC72921.1    GEZM01008457    JAV94772.1    KQ971729    KYB24751.1    KQ973342    KXZ75569.1    GALX01005299    JAB63167.1    GALX01005359    JAB63107.1    GGMR01019198    MBY31817.1    ABLF02029306    ABLF02029314    ABLF02060138    S59870    AAB26437.2    GGMS01006359    MBY75562.1    RPOV01000134    RPJ78669.1    GBBI01004395    JAC14317.1    GBBI01004571    JAC14141.1    GFXV01007093    MBW18898.1    ABLF02042518    ABLF02057746    GFTR01008038    JAW08388.1    NEVH01006736    PNF36716.1    GBBI01001646    JAC17066.1    GGMR01018716    MBY31335.1    NEVH01006721    PNF37225.1    ABLF02033757    NEVH01026386    PNF14434.1    GGMS01002955    MBY72158.1    GGMS01002992    MBY72195.1    GGFJ01002256    MBW51397.1    GGFJ01002257    MBW51398.1    GGMR01003407    MBY16026.1    ABLF02024246    GGFJ01001842    MBW50983.1    GGFJ01001844    MBW50985.1    GGFJ01001843    MBW50984.1    ABLF02008463    JRES01000644    KNC29657.1    GEZM01053022    JAV74219.1    GBGD01000880    JAC88009.1    GFTR01008256    JAW08170.1    GFTR01008271    JAW08155.1    GFTR01008251    JAW08175.1    GBGD01000799    JAC88090.1    GGFL01005012    MBW69190.1    GGFL01004957    MBW69135.1    GGMS01017365    MBY86568.1    GGMR01012305    MBY24924.1    ABLF02008153    ABLF02008462    ABLF02008464    GGMR01006408    MBY19027.1    GGMR01000676    MBY13295.1    NEVH01020940    PNF20481.1    NEVH01016302    PNF25823.1    GFTR01008262    JAW08164.1    NEVH01000269    PNF43694.1    NEVH01005938    PNF38077.1    LBMM01014395    KMQ85192.1    KK119692    KFM76444.1    NEVH01003017    PNF40781.1    NEVH01007443    PNF35684.1    NEVH01018383    PNF23463.1    NEVH01021586    NEVH01006600    NEVH01002584    PNF19589.1    PNF37419.1    PNF41868.1    GBBI01001570    JAC17142.1    GGFJ01001858    MBW50999.1    GGMR01000857    MBY13476.1    GGMR01014053    MBY26672.1    GGMS01004444    MBY73647.1    GBBI01003810    JAC14902.1    GBGD01000389    JAC88500.1    NEVH01010546    PNF32261.1    GFDF01007661    JAV06423.1    NEVH01017542    PNF24034.1    GGMR01000005    MBY12624.1    NEVH01020071    PNF21969.1    JXUM01014072    KQ560393    KXJ82651.1    NEVH01023962    PNF17612.1    NEVH01019964    PNF22161.1    NWSH01000032    PCG80496.1    GGFJ01001857    MBW50998.1    NEVH01001355    PNF42855.1   

Proteomes

UP000053268    UP000007266    UP000007819    UP000235965    UP000037069    UP000036403    + More
UP000054359    UP000069940    UP000249989    UP000218220   

PRIDE

Q9XXW0    Q93137    Q9BPQ0   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF07530   PRE_C2HC
PF03372   Exo_endo_phos

Interpro

IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR006579   Pre_C2HC_dom       

SUPFAM

SSF56219   SSF56219       

Gene 3D

3.60.10.10    

ProteinModelPortal

Q9XXW0   Q93137   Q9BPQ0   A0A0N1PFV1   O96546   A0A1Y1NA23   + More
A0A139WA11   A0A139W8G9   V5GNJ2   V5GNF3   A0A2S2PR14   J9KKL3   Q07995   A0A2S2QEE0   A0A3N5Z7I3   A0A023EYS8   A0A023EZE6   A0A2H8U0H5   X1WLB2   A0A224XF24   A0A2J7R7D0   A0A023F6S4   A0A2S2PPK8   A0A2J7R8R8   J9KC83   A0A2J7PDM0   A0A2S2Q352   A0A2S2Q383   A0A2M4BEF4   A0A2M4BEZ9   A0A2S2NGV8   J9M522   A0A2M4BDA5   A0A2M4BD66   A0A2M4BD62   J9KCZ4   A0A0L0CBP5   A0A1Y1LKN6   A0A069DZC5   A0A224XI99   A0A224X6S1   A0A224X6U5   A0A069DW01   A0A2M4CV42   A0A2M4CV52   A0A2S2R9D4   A0A2S2P698   X1WNI2   A0A2S2NPG3   A0A2S2N814   A0A2J7PVX3   A0A2J7QB68   A0A224XB44   A0A2J7RS81   A0A2J7RB54   A0A0J7K4E0   A0A087UGF5   A0A2J7RIW7   A0A2J7R4B7   A0A2J7Q4F7   A0A2J7RM10   A0A023F7D1   A0A2M4BD67   A0A2S2N9P4   A0A2S2PBB4   A0A2S2Q7E7   A0A023F069   A0A069DX78   A0A2J7QUJ9   A0A1L8DIZ6   A0A2J7Q627   A0A2S2N629   A0A2J7Q059   A0A182GMD9   A0A2J7PMP6   A0A2J7Q0Q6   A0A2A4K918   A0A2M4BDV6   A0A2J7RPU2  

PDB

6AR3     E-value=0.00717085,     Score=95

KEGG

105842121    no KO assigned | (RefSeq) uncharacterized LOC105842121

GO

GO:0003964   GO:0004519  

Length:

726

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.29527

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00882

outside

1  -  726

 

 

Pi

0.320249

Theta

11.51277

Tajima's D

-1.701207

CLR

41.538952

CSRT

0.0350482475876206

Interpretation

Uncertain