Gene

KWMTBOMO12778

Pre Gene Modal

BGIBMGA013095

Annotation

reverse_transcriptase_[Operophtera_brumata]

Location

Bomo_Chr21(-):14341952-14346374      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 2.434

CDS

ATGGCTCAACTTATAGGAAACATATCTGAGTTTGATTATAAAACCCAAGAATGGCAGATCTTTTACAAGAAATTAGAAAATTTCCTAAAGTTGAACAAAGTTTTAGCTGAAGATTGGTGCTCCGTGCTTATTGCACATCTTTCAGATGATTCGTATCGGCTTGTGAGGAACCTCGTACATCCTAAGGAGGTAGAAATAGTACAATGGACTGAGCTGGTTAGAGTACTCAACGGACATTTTCAACCGAAAAGATCGACTTTTGCCGACAGGGCAAAATTTTATGGTGCGATCAGAATGGACGGTGAGAAAGTCGAAGATTGGGCGGCACGTCTGAGGGGACTCGCCGTGCACTGTAATTTCGGTACAGAATTAGATACGTTGCTACGTGATCGATTTATTCTAGGCCTGAAAGTAGGTCCAGAAAGAGATCGATTGTTCGAACAAGACTCGAACTCCCTAACGCTTTCGAGAGCTATTGAAATAGCCCAGGAGACTGCGTGTGCGCGGGCGGCGAGAGCTGATGTTGATGGTAGTGAGCAGCTTATCAAACAAGAGATGGTGTATCGTGTCAGCGAGCGTCGGGCGCGGGGCGCCTCGGCGCAGGCGGAGTCGTCGTGGGCATCGGCTGCAGCCGCGCGCTGTGCAGTGTGCGGGTTGAAAGGTCATTCCGTAGAAAAGTGCCGTTTCAAAGACTATAAGTGTATGATTTGTGGTAAAAAGGGTCACCTTAAGAAAGTGTGCAGTGTCAAAAAGGTCGGAAAACTGTCGTTAAATAATATGGATGATAACGAAAGTGATGGACACGAATGTAAAAAATGTGATTTGTATAATTTAAGGTATGTTCGCTACGATCCTATTAAGTTGAACATTTCTATAAATAATAAGTTTTATTCTATGGAATTAGATTGCGGAGCTGCTCGTAGTGTAATTTCAGAAAGATTTTACAGGGATAACTTCCCATTATACAAATTAATTAGAGCGGAATACCAAGAGGTGCAGCAGATCTTGAATGAATTCCCTGACATTTGGAGAGATGAATTGGGCCGTTTTAATAAATATGAAGTGCATTTACACTTGAAAGAAAATACAACACCTAAATTTTTTAAGCCACGCCAAATACCGTTTGCTCTAAAGGACAAGGTTGAAGAAGAATTACATAGGCTTGTCGAAGCAGGTATATTAGTACCAGTACAGTTTTCAGATTATGCTACGCCCATAGTACCAGTTCTGAAGGAGAATGGTAAAGTGAAAATAGCTGGAGATTTTTCCTGTACCCTAAATAAAGTTTTAAAAATTGACAAATATCCATTACCCCACATAGACGAGGTTTTCGCGAAGTTAGGCGGCGGCGAGCATTATTCTAAGCTAGATTTAAGTAATGCCTATAATCAAATTTGTTTGTCTCAAGCCTCTCAAGACCTCACAACTATAAATACACCGAAAGGACTTTTCAAATATACACGCTTAGTGTACGGTCTCGCGAATGCCCCAGCTATTTTCCAGCGCACAATAGAATCTCTAGTAGTAGGTATTGAAGGAGTGTCGTGTTGGAATTTTATTCCTAATGCATCCTCATTATTAAGTCCGCTGAACGAATTATTAAAAGACGACATAAAATGGCACTGGGATAAGCGACAGCAGCTTGCGTTTGATTCCGTGCGAAAAGAACTCGCCTCGGACCGCGTACTATCACATTTCGATCCGAGGGCGCAGCTAACATTGACAGTGGATGCGGGCCCGTCTGGTCTCGGCGCGGGGGAGGATGAGGAGGGCGATGAATGGGAGGAGGCTAGTGAAAACATCGCAGCTGCCAGCCTGCCGACCGAGTGTGAACCTGATTACCCTATTGTAGCATCAGATGACCCCGATAACGTGAGATTAGAAGAGAGGGCGCCAGATAATGAAAGACAGTGTGGTCGACCAAAGAGGACAAGAAAAGTAGTAGATTATAAGAAGTATTTTTAA

Protein

MAQLIGNISEFDYKTQEWQIFYKKLENFLKLNKVLAEDWCSVLIAHLSDDSYRLVRNLVHPKEVEIVQWTELVRVLNGHFQPKRSTFADRAKFYGAIRMDGEKVEDWAARLRGLAVHCNFGTELDTLLRDRFILGLKVGPERDRLFEQDSNSLTLSRAIEIAQETACARAARADVDGSEQLIKQEMVYRVSERRARGASAQAESSWASAAAARCAVCGLKGHSVEKCRFKDYKCMICGKKGHLKKVCSVKKVGKLSLNNMDDNESDGHECKKCDLYNLRYVRYDPIKLNISINNKFYSMELDCGAARSVISERFYRDNFPLYKLIRAEYQEVQQILNEFPDIWRDELGRFNKYEVHLHLKENTTPKFFKPRQIPFALKDKVEEELHRLVEAGILVPVQFSDYATPIVPVLKENGKVKIAGDFSCTLNKVLKIDKYPLPHIDEVFAKLGGGEHYSKLDLSNAYNQICLSQASQDLTTINTPKGLFKYTRLVYGLANAPAIFQRTIESLVVGIEGVSCWNFIPNASSLLSPLNELLKDDIKWHWDKRQQLAFDSVRKELASDRVLSHFDPRAQLTLTVDAGPSGLGAGEDEEGDEWEEASENIAAASLPTECEPDYPIVASDDPDNVRLEERAPDNERQCGRPKRTRKVVDYKKYF

Uniprot

X1XT86   X1WTX7   Q5KTM2   J9KFN3   A0A1Y1KCE7   J9LDN7   + More
A0A2B4S417   J9KDA1   A0A3P8QD94   A0A3P8NHI5   J9LBK5   A0A1Y1NFA4   A0A3P8RGT3   A0A0A9WT47   J9L142   A0A3B3R045   A0A2S2PU23   A0A1B6DD07   A0A1B6CPB9   A0A0J7KGA3   A0A3S0ZSV8   A0A293M1Z2   A0A085LXZ4   A0A1Y1M058   A0A1S4EQA3   A0A1X7UD72   A0A2S2N957   A0A147BQ83   X1WRQ5   H3AL86   A0A2B4T0D2   B7QBI4   A0A0V0TT39   A0A090XAL0   A0A0V0ZE23   A0A0V0ZDL9   A0A267G4K7   A0A267E8T4   A0A267EF28  

Pubmed

28004739    25401762    29240929    24929829    29652888    9215903    + More
25970599   

EMBL

ABLF02012266    ABLF02012271    ABLF02008248    ABLF02008249    ABLF02008250    ABLF02035153    + More
ABLF02037855    ABLF02037866    ABLF02061872    AB126055    BAD86655.1    ABLF02036937    GEZM01092768    GEZM01092767    JAV56467.1    ABLF02030002    LSMT01000205    PFX23520.1    ABLF02025265    ABLF02025271    ABLF02025272    ABLF02038551    ABLF02038554    ABLF02042419    GEZM01009753    JAV94337.1    GBHO01031997    JAG11607.1    ABLF02012827    ABLF02012828    ABLF02015552    ABLF02041322    GGMR01020219    MBY32838.1    GEDC01013717    JAS23581.1    GEDC01021971    JAS15327.1    LBMM01007751    KMQ89453.1    RQTK01000185    RUS85038.1    GFWV01009597    MAA34326.1    KL363263    KFD49840.1    GEZM01043158    JAV79264.1    GGMR01001051    MBY13670.1    GEGO01002490    JAR92914.1    ABLF02024359    ABLF02057220    AFYH01176858    LSMT01000001    PFX35006.1    ABJB010082761    DS901637    EEC16206.1    JYDJ01000151    KRX42156.1    GBIH01000758    JAC93952.1    JYDQ01000223    KRY10622.1    KRY10623.1    NIVC01000594    PAA80182.1    NIVC01002515    PAA57229.1    NIVC01002188    PAA60150.1   

Proteomes

UP000007819    UP000225706    UP000265100    UP000261540    UP000036403    UP000271974    + More
UP000079169    UP000007879    UP000008672    UP000001555    UP000055048    UP000054783    UP000215902   

PRIDE

Q5KTM2   

Pfam

PF17919   RT_RNaseH_2        + More
PF00078   RVT_1
PF17921   Integrase_H2C2
PF00665   rve
PF13683   rve_3
PF17917   RT_RNaseH
PF05485   THAP
PF00378   ECH_1
PF00077   RVP
PF00098   zf-CCHC
PF00041   fn3
PF03564   DUF1759
PF05147   LANC_like

Interpro

IPR021109   Peptidase_aspartic_dom_sf        + More
IPR041577   RT_RNaseH_2       
IPR000477   RT_dom       
IPR036397   RNaseH_sf       
IPR041588   Integrase_H2C2       
IPR034128   K02A2.6-like       
IPR001584   Integrase_cat-core       
IPR012337   RNaseH-like_sf       
IPR001878   Znf_CCHC       
IPR036875   Znf_CCHC_sf       
IPR041373   RT_RNaseH       
IPR006612   THAP_Znf       
IPR001969   Aspartic_peptidase_AS       
IPR001753   Enoyl-CoA_hydra/iso       
IPR029045   ClpP/crotonase-like_dom_sf       
IPR001995   Peptidase_A2_cat       
IPR018061   Retropepsins       
IPR003961   FN3_dom       
IPR013783   Ig-like_fold       
IPR036116   FN3_sf       
IPR005312   DUF1759       
IPR012341   6hp_glycosidase-like_sf       
IPR020464   LanC-like_prot_euk       
IPR007822   LANC-like       

SUPFAM

SSF50630   SSF50630        + More
SSF53098   SSF53098       
SSF57756   SSF57756       
SSF52096   SSF52096       
SSF49265   SSF49265       

Gene 3D

2.40.70.10     3.30.420.10     2.60.40.10     1.50.10.10    

CDD

cd05484  retropepsin_like_LTR_2
cd00063  FN3
cd04794  euk_LANCL

ProteinModelPortal

X1XT86   X1WTX7   Q5KTM2   J9KFN3   A0A1Y1KCE7   J9LDN7   + More
A0A2B4S417   J9KDA1   A0A3P8QD94   A0A3P8NHI5   J9LBK5   A0A1Y1NFA4   A0A3P8RGT3   A0A0A9WT47   J9L142   A0A3B3R045   A0A2S2PU23   A0A1B6DD07   A0A1B6CPB9   A0A0J7KGA3   A0A3S0ZSV8   A0A293M1Z2   A0A085LXZ4   A0A1Y1M058   A0A1S4EQA3   A0A1X7UD72   A0A2S2N957   A0A147BQ83   X1WRQ5   H3AL86   A0A2B4T0D2   B7QBI4   A0A0V0TT39   A0A090XAL0   A0A0V0ZE23   A0A0V0ZDL9   A0A267G4K7   A0A267E8T4   A0A267EF28  

PDB

4OL8     E-value=2.20389e-16,     Score=211

KEGG

NA   

GO

GO:0015074   GO:0003964   GO:0003676   GO:0008270   GO:0003677   GO:0004190   GO:0016021   GO:0005634   GO:0003824   GO:0048487   GO:0005085   GO:0007264   GO:0048015   GO:0004003   GO:0006289   GO:0016286  

Length:

654

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00322

Exp number, first 60 AAs:

0.00019

Total prob of N-in:

0.00029

outside

1  -  654

 

 

Pi

11.035767

Theta

12.01733

Tajima's D

-0.646562

CLR

3.65391

CSRT

0.214689265536723

Interpretation

Uncertain