Gene

KWMTBOMO12769

Pre Gene Modal

BGIBMGA006410

Annotation

endonuclease-reverse_transcriptase_[Blattella_germanica]

Location

Bomo_Chr21(-):14065915-14067863      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.243

CDS

ATGGAAGCTCAAAGAAAAACCAGACAAGTTATAAGAACAGCCAAGCGAGAGCACATGAATGACATCATGAAGAATATGGAAAACCTGATAAGAACGAATGAGGCTCGAAAATTCTACCAGGAAATAAGATCGGTAAAGAAGGCATACCAACCAATCGCACAATTTCTTGAAGACGAAGACGGAAATCTTGTGACTAACATTCGTGAGATCAGTGTAATGTGGCGTCAGTACTTTCAAAACCTTCTGAATTGCCCTCCACCGACGGAAGATTTAGATGACAACCCCCAAGATCCTGCGGAGGAAGAAGAAGTGGAGCCACTGAACTTCGAAGAAATAAAAAACGCTATTATGAGGCTTAAGAACAACAAAGCGCCAGGTATTGACAACCTACCATCTGAACTGTGGAAATACGGCGGAGAAGCCTTGCAGTCCAGATTGTACAATCTTATTAAAATGATATGGGAATCTGAACAACAACCTGTCCAGTGGTATTCGGGGGTCATCTGCCCCATACACAAAAAAGGCAGCCGGAAGAAATGCAGTAACTACAGAGGAATTGCTTTACTACCTACAGCGTACAAAATACTGTCATACGTTTTACTAAGCAGGTTAGAGCCGTATTCAGACAAAATCATTGGGGATTATCAGTGCGGCTTCAGACGTAATCGTAGTACAGTCGACCAAATCTTTACTCTGAAACAGTTAATGGAGAAAAGATGGGAGTATGCACAAAGTATTCATTCGCTCTTTGTTGATTTTGCTAAGGCCTACGACAGCATAGATAGACCGACTCTATATAGAATCCTCACGCGCTTTAAAATCCCACAGAAACTTGTGAGAATGGTGGAGGTTGCTACTAGGGAAAGTAGAATGACGGTACGAGTTGGCGCTTCTCTCACTGATGAGTTTGACGTTGTGACTGGACTCAGGCAGGGGGACGCTCTGTCACCAATGCTGTTCAACCTGGCACTTGAACACGCCATACGGAAAGTGAACACACTTAGTGGCGGAGTGTGGCTCAACGGACAGCATAGGGTGATAGGATATGCCGATGACCTCGCTCTACTTGGAGAAAGAAAGCAGCACGTTATAGACGCACTCAACTGCCTCCAACAAGAAGCCTCTCGGATTGGCCTTCGCGTGAGCCACGAGAAGACAGAATATCTTCACATGCGTCGATATAAAAACGTAAGACGGAAGCGAGAAGACCTAGTGGTGGGAAATACGAGGTTCAAAGGAGTGGCTAAATTCCGGTACCTTGGCTGCACTGTAACAGACACCAATGACAGGGAAGATGAAATCGAAATTCGTATACAAAATACCCTACGATGCAGTGCAGCCCTACACCCGGTTCTCTCTTCGAAGCTACTAAGCAGGCGCACCAAGATTCGGATATACAAGACTCTAGTCAGACCGATCCTATTGTATGGATGCGAAGCATGGACGCTCACACAGAAAGAAGAGGCAAAACTTCTCGTGACGGAGCGAAAGGTATTGAGAAAAATACTAGGACCAGTTCGGAAAGAAGACGGTTCTTGGCACGTCCGGAAAAATAAGGATGTGGAGAGGCTTTTTGGTGAGCCAAATATTCTGGGGGAGATGAAGGCACGGAGGCTCGGATGGCTCGGACATGTAGTACGTATGGAGCAGGATCGGGCTGTGAAACGGGTGTACACGGGTGTACCGGAGGGACGCCGCCCCGTAGGGAGGCCCAAGTACCGCTGGTGTGACGCTGTGGAAGGAGATTTACGGGAGCTCCAAGTGTCGGACTGGCAAGGTGTTGCGCAGCGCCGGGATGAATGGCAAAGTTTATTGTCGGAGGCCAAGACCCACTTCGGGGTCATAGCGCCAGCTCAGTAG

Protein

MEAQRKTRQVIRTAKREHMNDIMKNMENLIRTNEARKFYQEIRSVKKAYQPIAQFLEDEDGNLVTNIREISVMWRQYFQNLLNCPPPTEDLDDNPQDPAEEEEVEPLNFEEIKNAIMRLKNNKAPGIDNLPSELWKYGGEALQSRLYNLIKMIWESEQQPVQWYSGVICPIHKKGSRKKCSNYRGIALLPTAYKILSYVLLSRLEPYSDKIIGDYQCGFRRNRSTVDQIFTLKQLMEKRWEYAQSIHSLFVDFAKAYDSIDRPTLYRILTRFKIPQKLVRMVEVATRESRMTVRVGASLTDEFDVVTGLRQGDALSPMLFNLALEHAIRKVNTLSGGVWLNGQHRVIGYADDLALLGERKQHVIDALNCLQQEASRIGLRVSHEKTEYLHMRRYKNVRRKREDLVVGNTRFKGVAKFRYLGCTVTDTNDREDEIEIRIQNTLRCSAALHPVLSSKLLSRRTKIRIYKTLVRPILLYGCEAWTLTQKEEAKLLVTERKVLRKILGPVRKEDGSWHVRKNKDVERLFGEPNILGEMKARRLGWLGHVVRMEQDRAVKRVYTGVPEGRRPVGRPKYRWCDAVEGDLRELQVSDWQGVAQRRDEWQSLLSEAKTHFGVIAPAQ

Uniprot

A0A2P8ZGH9   A0A2P8YPE1   A0A2P8XT91   A0A060Q6A2   A0A2P8ZIH1   A0A2P8ZLT6   + More
A0A2P8Z488   A0A2P8YWA2   A0A2P8Z313   A0A2P8YLY7   A0A2P8ZFZ0   A0A2P8Y2S1   A0A2P8YLJ1   A0A2P8XR21   A0A1B0DRK3   A0A023F0H0   A0A0K8TRS6   A0A2P8ZCA4   A0A0J7KMY2   A0A2S2NQ16   A0A367YPS2   A0A0U4HM41   A0A2P8YGI5   A0A2M4A3Y0   A0A0K8TJE5   A0A2M4A3Z2   A0A023F0M0   A0A2S2PCU1   A0A2P8YFW0   A0A2P8YYC9   D7F170   A0A2P8ZAY7   A0A023F0F3   A0A2M4A3H0   A0A2M4ACI4   J9L287   A0A146KNZ7   A0A2M4A2X8   A0A2M4A809   A0A2P8Z0K7   A0A2P8XC08   A0A2M4CRR0   J9LFP1   A0A2M4CRT4   A0A3L8DEM2   A0A023EZ68   A0A069DWW0   A0A0P8Y4M6   A0A0V0G616   A0A2P8YTB7   A0A2M4A6U1   A0A0P8Y6K1   J9KNQ8   A0A0V0G8V1   A0A0K8SN56   A0A2S2PT92   A0A2J7Q3Q5   A0A0N8NZU6   A0A0P9A604   X1X8T7   A0A0P8Y5F3   A0A2L2YFD0   A0A2S2N6G4   A0A2S2PIT5   A0A2P8ZEA9   A0A0P8ZWR4   A0A2P8YHZ7   J9KHI9   A0A2S2P2F5   T1E1T8   X1X9T6   A0A0K8S3X2   A0A2P8ZET0   A0A2P8XRQ1   A0A023EZ18   A0A0A9WI21   J9L6X2   A0A2P8Z3H5   A0A023EX67   A0A0P8Y3A6   X1WLM1   J9M6M7   J9KT01   A0A0P8XJ08   A0A023EXX8   A0A2S2N711   A0A0P8Y0P3   X1WT72   A0A0P8XDM7   A0A0P9AMX6   J9KUA2   A0A0P8XIG1   J9KH77   A0A0P9BSL5   A0A0P9AAF4   A0A0P8Y7V9   A0A2S2P3U1   J9LBF3   A0A1Y1LRT6   A0A023EWL3  

Pubmed

29403074    25474469    26369729    25527032    20470440    26823975    + More
30249741    26334808    17994087    26561354    24330624    25401762    24945155    18057021    28004739   

EMBL

PYGN01000064    PSN55609.1    PYGN01000451    PSN46127.1    PYGN01001382    PSN35227.1    + More
HE799691    CCH14900.1    PYGN01000047    PSN56294.1    PYGN01000020    PSN57453.1    PYGN01000203    PSN51319.1    PYGN01000324    PSN48495.1    PYGN01000219    PSN50892.1    PYGN01000502    PSN45243.1    PYGN01000070    PSN55417.1    PYGN01001004    PSN38555.1    PYGN01000510    PSN45119.1    PYGN01001494    PSN34463.1    AJVK01001578    GBBI01004263    JAC14449.1    GDAI01000742    JAI16861.1    PYGN01000107    PSN54137.1    LBMM01005351    KMQ91586.1    GGMR01006433    MBY19052.1    QOUI01000020    RCK67885.1    KU311054    ALX81665.1    PYGN01000613    PSN43351.1    GGFK01002192    MBW35513.1    GBRD01000202    JAG65619.1    GGFK01002196    MBW35517.1    GBBI01004198    JAC14514.1    GGMR01014652    MBY27271.1    PYGN01000629    PSN43121.1    PYGN01000287    PSN49259.1    FJ265555    ADI61823.1    PYGN01000119    PSN53667.1    GBBI01004261    JAC14451.1    GGFK01001949    MBW35270.1    GGFK01005184    MBW38505.1    ABLF02027703    ABLF02061609    GDHC01021627    JAP97001.1    GGFK01001798    MBW35119.1    GGFK01003613    MBW36934.1    PYGN01000254    PSN50032.1    PYGN01003402    PSN29545.1    GGFL01003846    MBW68024.1    ABLF02066124    GGFL01003845    MBW68023.1    QOIP01000009    RLU18885.1    GBBI01004199    JAC14513.1    GBGD01000331    JAC88558.1    CH902619    KPU76535.1    GECL01002632    JAP03492.1    PYGN01000372    PSN47498.1    GGFK01003183    MBW36504.1    CH902653    KPU74858.1    ABLF02039015    GECL01001585    JAP04539.1    GBRD01011073    JAG54751.1    GGMR01020071    MBY32690.1    NEVH01019065    PNF23216.1    CH902657    KPU75308.1    CH902621    KPU81727.1    ABLF02009557    ABLF02016497    ABLF02041313    ABLF02041567    ABLF02062088    CH904714    KPU81814.1    IAAA01017079    LAA06070.1    GGMR01000126    MBY12745.1    GGMR01016675    MBY29294.1    PYGN01000082    PSN54842.1    CH902626    KPU79149.1    PYGN01000580    PSN43876.1    ABLF02019047    ABLF02019049    GGMR01010991    MBY23610.1    GALA01001775    JAA93077.1    ABLF02036907    ABLF02036915    ABLF02036922    ABLF02041419    GBRD01017846    JAG47981.1    PYGN01000078    PSN55011.1    PYGN01001465    PSN34679.1    GBBI01004262    JAC14450.1    GBHO01037471    GBRD01009355    GBRD01009354    GDHC01014856    GDHC01007898    JAG06133.1    JAG56469.1    JAQ03773.1    JAQ10731.1    ABLF02018097    ABLF02043469    ABLF02056908    PYGN01000212    PSN51056.1    GAPW01000107    JAC13491.1    CH902714    KPU81861.1    ABLF02010115    ABLF02030763    ABLF02005950    ABLF02005951    ABLF02003651    ABLF02007294    ABLF02007295    ABLF02056183    CH902627    KPU74872.1    GAPW01000199    JAC13399.1    GGMR01000301    MBY12920.1    CH902628    KPU75346.1    ABLF02020712    ABLF02020717    ABLF02054820    CH902623    KPU72899.1    CH902618    KPU79125.1    ABLF02026145    ABLF02026146    ABLF02042729    CH902666    KPU74610.1    ABLF02018925    CH902633    KPU74667.1    CH902622    KPU75266.1    KPU77326.1    CH902630    KPU77522.1    GGMR01011466    MBY24085.1    ABLF02003877    ABLF02042991    GEZM01048836    JAV76363.1    GAPW01000120    JAC13478.1   

Proteomes

UP000245037    UP000092462    UP000036403    UP000252770    UP000007819    UP000279307    + More
UP000007801    UP000235965   

PRIDE

D7F170   

Pfam

PF00078   RVT_1        + More
PF03372   Exo_endo_phos
PF14529   Exo_endo_phos_2
PF17919   RT_RNaseH_2
PF05699   Dimer_Tnp_hAT
PF13359   DDE_Tnp_4

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR000637   HMGI/Y_DNA-bd_CS       
IPR041577   RT_RNaseH_2       
IPR012337   RNaseH-like_sf       
IPR008906   HATC_C_dom       
IPR027806   HARBI1_dom       

SUPFAM

SSF56219   SSF56219        + More
SSF53098   SSF53098       

Gene 3D

3.60.10.10    

ProteinModelPortal

A0A2P8ZGH9   A0A2P8YPE1   A0A2P8XT91   A0A060Q6A2   A0A2P8ZIH1   A0A2P8ZLT6   + More
A0A2P8Z488   A0A2P8YWA2   A0A2P8Z313   A0A2P8YLY7   A0A2P8ZFZ0   A0A2P8Y2S1   A0A2P8YLJ1   A0A2P8XR21   A0A1B0DRK3   A0A023F0H0   A0A0K8TRS6   A0A2P8ZCA4   A0A0J7KMY2   A0A2S2NQ16   A0A367YPS2   A0A0U4HM41   A0A2P8YGI5   A0A2M4A3Y0   A0A0K8TJE5   A0A2M4A3Z2   A0A023F0M0   A0A2S2PCU1   A0A2P8YFW0   A0A2P8YYC9   D7F170   A0A2P8ZAY7   A0A023F0F3   A0A2M4A3H0   A0A2M4ACI4   J9L287   A0A146KNZ7   A0A2M4A2X8   A0A2M4A809   A0A2P8Z0K7   A0A2P8XC08   A0A2M4CRR0   J9LFP1   A0A2M4CRT4   A0A3L8DEM2   A0A023EZ68   A0A069DWW0   A0A0P8Y4M6   A0A0V0G616   A0A2P8YTB7   A0A2M4A6U1   A0A0P8Y6K1   J9KNQ8   A0A0V0G8V1   A0A0K8SN56   A0A2S2PT92   A0A2J7Q3Q5   A0A0N8NZU6   A0A0P9A604   X1X8T7   A0A0P8Y5F3   A0A2L2YFD0   A0A2S2N6G4   A0A2S2PIT5   A0A2P8ZEA9   A0A0P8ZWR4   A0A2P8YHZ7   J9KHI9   A0A2S2P2F5   T1E1T8   X1X9T6   A0A0K8S3X2   A0A2P8ZET0   A0A2P8XRQ1   A0A023EZ18   A0A0A9WI21   J9L6X2   A0A2P8Z3H5   A0A023EX67   A0A0P8Y3A6   X1WLM1   J9M6M7   J9KT01   A0A0P8XJ08   A0A023EXX8   A0A2S2N711   A0A0P8Y0P3   X1WT72   A0A0P8XDM7   A0A0P9AMX6   J9KUA2   A0A0P8XIG1   J9KH77   A0A0P9BSL5   A0A0P9AAF4   A0A0P8Y7V9   A0A2S2P3U1   J9LBF3   A0A1Y1LRT6   A0A023EWL3  

KEGG

105843006    no KO assigned | (RefSeq) uncharacterized LOC105843006

GO

GO:0004519   GO:0003964   GO:0006355   GO:0046983   GO:0003723   GO:0006278   GO:0016303   GO:0046854   GO:0048015   GO:0004003   GO:0005634   GO:0006289   GO:0016286  

Length:

619

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

4.16481

Exp number, first 60 AAs:

0

Total prob of N-in:

0.20572

outside

1  -  619

 

 

Pi

15.527612

Theta

18.874603

Tajima's D

-0.660436

CLR

3.955404

CSRT

0.2024398780061

Interpretation

Uncertain