Gene

KWMTBOMO12760  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA007160

Annotation

PREDICTED:_probable_isocitrate_dehydrogenase_[NAD]_subunit_alpha?_mitochondrial_[Bombyx_mori]

Location

Bomo_Chr21(-):13945684-13956083      View in EpiBrowser

Full name

Isocitrate dehydrogenase [NAD] subunit, mitochondrial      

Location in the cell

Cytoplasmic   Reliability : 1.958

CDS

ATGTCAGACGGCCTCTTCCTGCGCTGTTGTCGCGAGCTCGCCACCAAGTACCCGGACATCAAGTTTGAAGAGCGATACCTGGACACGGTCTGCCTCAACATGGTGCAGGACCCCTCCAAGTTTGACGTGCTGGTGATGCCCAACCTGTACGGTGACATCATGTCGGACATGTGTTCCGGGCTCGTGGGCGGGCTCGGCCTCACGCCCTCCGGCAACATCGGCAAGAACGGCGCGCTCTTCGAGTCGGTACACGGTACAGCCCCAGATATCGCCGGTAAAGACATGGCCAATCCTACAGCCCTACTGTTGTCGGCTATTATGATGCTGAGGCATTTGCAGTTAAATGATCACGCTGATCTCGTCCAGAATGCCTGTTACGAAGTATTACGCGAGGGCAGAGCCTTGACTGGTGACCTCGGCGGTACCGCGAAATGCAGTGAATTTACTAATGCCATCATTTCAAAACTGAATTAG

Protein

MSDGLFLRCCRELATKYPDIKFEERYLDTVCLNMVQDPSKFDVLVMPNLYGDIMSDMCSGLVGGLGLTPSGNIGKNGALFESVHGTAPDIAGKDMANPTALLLSAIMMLRHLQLNDHADLVQNACYEVLREGRALTGDLGGTAKCSEFTNAIISKLN

Similarity

Belongs to the isocitrate and isopropylmalate dehydrogenases family.

Uniprot

I4DNF6   A0A3S2L4B0   S4PM50   A0A1S4EVW3   Q17P80   A0A023EQF0   + More
Q17P79   A0A1S4EVV7   A0A182SRU0   H9JCB5   A0A1A9W960   T1D494   T1D2I5   A0A1B0FFJ0   A0A182JHS8   A0A034VLP0   A0A084VRI3   A0A034VRS1   D3TSB1   A0A182QRH2   A0A1A9URI5   A0A0A1XLS9   A0A2M4AER3   A0A182M3T4   A0A0A1WTA0   A0A1A9YJC5   A0A2M4AC44   A0A2M4BSD8   W5JJ40   A0A182TG30   A0A1I8JVG7   A0A340TB72   A0A182LE36   A0A2C9GLB7   Q7PQX9   T1DQ50   A0A2M4BSU9   A0A182FQY2   A0A182RT14   A0A1Y9HD80   B0W6Q6   A0A2M4BQQ7   A0A182NR46   A0A2M4ADC4   A0A453YML4   F5HKN6   A0A182UYU4   A0A182HS68   A0A1Q3G3W3   A0A1Q3FGV2   A0A182PCK6   A0A2M3Z5S3   A0A182XAC4   W8CDU6   A0A182VZT2   A0A2M4ANN7   A0A2M4CFZ9   A0A182U9D6   A0A1B6GXP0   A0A182Y3Z3   A0A2M3Z5N9   A0A182K4P9   A0A1B0EZB5   A0A0L0C9V8   A0A1L8E0K4   J3JXM4   A0A1L8E022   A0A1Q3G3X4   A0A0K8TTP8   A0A1J1J2D3   A0A0N0PBV0   A0A1L8E026   T1P9X3   U5EUV7   A0A212F9U9   A0A1I8P883   D6WCZ6   A0A2H1W2T3   A0A0M4ETP7   A0A0C5QEU6   A0A1L8EDB1   A0A1L8EHZ0   A0A1W4W9H9   A0A336JXZ0   J9JQ96   B4JX16   B4L6W2   A0A1S3DCF1   A0A0Q9XF11   A0A0K2VI16   E2B105   A0A154PEB2   A0A1B6KN33   A0A3B0KVC3   A0A2S2NBN6   A0A1W4VG47   A0A2W1BIY5   A0A0P8Y537   A0A310SK85   A0A1W4VTF1  

Pubmed

22651552    23622113    17510324    24945155    19121390    24330624    + More
25348373    24438588    20353571    25830018    20920257    23761445    20966253    12364791    14747013    17210077    24495485    25244985    26108605    22516182    23537049    26369729    26354079    25315136    22118469    18362917    19820115    25702953    17994087    20798317    28756777   

EMBL

AK402883    BAM19446.1    RSAL01000164    RVE45334.1    GAIX01003740    JAA88820.1    + More
CH477193    EAT48554.1    GAPW01002275    JAC11323.1    EAT48553.1    BABH01031587    GALA01001043    JAA93809.1    GALA01001603    JAA93249.1    CCAG010015760    GAKP01014731    JAC44221.1    ATLV01015680    KE525027    KFB40577.1    GAKP01014729    JAC44223.1    EZ424313    ADD20589.1    AXCN02001476    GBXI01002502    JAD11790.1    GGFK01005891    MBW39212.1    AXCM01000347    GBXI01012205    JAD02087.1    GGFK01004971    MBW38292.1    GGFJ01006829    MBW55970.1    ADMH02001265    ETN63313.1    APCN01000245    AAAB01008859    EAA08136.6    GAMD01001385    JAB00206.1    GGFJ01006998    MBW56139.1    DS231849    EDS36887.1    GGFJ01006275    MBW55416.1    GGFK01005419    MBW38740.1    EGK96788.1    GFDL01000550    JAV34495.1    GFDL01008248    JAV26797.1    GGFM01003120    MBW23871.1    GAMC01001331    JAC05225.1    GGFK01009079    MBW42400.1    GGFL01000001    MBW64179.1    GECZ01002573    JAS67196.1    GGFM01003079    MBW23830.1    AJVK01008650    JRES01000713    KNC29037.1    GFDF01001982    JAV12102.1    APGK01052691    BT127994    KB741213    KB631874    AEE62956.1    ENN72661.1    ERL86877.1    GFDF01001991    JAV12093.1    GFDL01000537    JAV34508.1    GDAI01000080    JAI17523.1    CVRI01000067    CRL06699.1    KQ460882    KPJ11466.1    GFDF01001974    JAV12110.1    KA645474    AFP60103.1    GANO01001283    JAB58588.1    AGBW02009556    OWR50516.1    KQ971311    EEZ99082.2    ODYU01005928    SOQ47333.1    CP012528    ALC49940.1    KM609498    AJQ30122.1    GFDG01002157    JAV16642.1    GFDG01000580    JAV18219.1    UFQS01000006    UFQT01000006    SSW97007.1    SSX17394.1    ABLF02036961    ABLF02036966    CH916376    EDV95292.1    CH933812    EDW06108.1    KRG07151.1    HACA01032718    CDW50079.1    GL444767    EFN60631.1    KQ434886    KZC10183.1    GEBQ01027125    JAT12852.1    OUUW01000031    SPP89806.1    GGMR01001994    MBY14613.1    KZ150013    PZC75032.1    CH902621    KPU81686.1    KQ762031    OAD56356.1   

Proteomes

UP000283053    UP000008820    UP000075901    UP000005204    UP000091820    UP000092444    + More
UP000075880    UP000030765    UP000075886    UP000078200    UP000075883    UP000092443    UP000000673    UP000075902    UP000076407    UP000075903    UP000075882    UP000075840    UP000007062    UP000069272    UP000075900    UP000002320    UP000075884    UP000075885    UP000075920    UP000076408    UP000075881    UP000092462    UP000037069    UP000019118    UP000030742    UP000183832    UP000053240    UP000095301    UP000007151    UP000095300    UP000007266    UP000092553    UP000192223    UP000007819    UP000001070    UP000009192    UP000079169    UP000000311    UP000076502    UP000268350    UP000192221    UP000007801   

PRIDE

H9JCB5   

Pfam

PF00180   Iso_dh

Interpro

IPR024084   IsoPropMal-DH-like_dom        + More
IPR019818   IsoCit/isopropylmalate_DH_CS       
IPR004434   Isocitrate_DH_NAD       

ProteinModelPortal

I4DNF6   A0A3S2L4B0   S4PM50   A0A1S4EVW3   Q17P80   A0A023EQF0   + More
Q17P79   A0A1S4EVV7   A0A182SRU0   H9JCB5   A0A1A9W960   T1D494   T1D2I5   A0A1B0FFJ0   A0A182JHS8   A0A034VLP0   A0A084VRI3   A0A034VRS1   D3TSB1   A0A182QRH2   A0A1A9URI5   A0A0A1XLS9   A0A2M4AER3   A0A182M3T4   A0A0A1WTA0   A0A1A9YJC5   A0A2M4AC44   A0A2M4BSD8   W5JJ40   A0A182TG30   A0A1I8JVG7   A0A340TB72   A0A182LE36   A0A2C9GLB7   Q7PQX9   T1DQ50   A0A2M4BSU9   A0A182FQY2   A0A182RT14   A0A1Y9HD80   B0W6Q6   A0A2M4BQQ7   A0A182NR46   A0A2M4ADC4   A0A453YML4   F5HKN6   A0A182UYU4   A0A182HS68   A0A1Q3G3W3   A0A1Q3FGV2   A0A182PCK6   A0A2M3Z5S3   A0A182XAC4   W8CDU6   A0A182VZT2   A0A2M4ANN7   A0A2M4CFZ9   A0A182U9D6   A0A1B6GXP0   A0A182Y3Z3   A0A2M3Z5N9   A0A182K4P9   A0A1B0EZB5   A0A0L0C9V8   A0A1L8E0K4   J3JXM4   A0A1L8E022   A0A1Q3G3X4   A0A0K8TTP8   A0A1J1J2D3   A0A0N0PBV0   A0A1L8E026   T1P9X3   U5EUV7   A0A212F9U9   A0A1I8P883   D6WCZ6   A0A2H1W2T3   A0A0M4ETP7   A0A0C5QEU6   A0A1L8EDB1   A0A1L8EHZ0   A0A1W4W9H9   A0A336JXZ0   J9JQ96   B4JX16   B4L6W2   A0A1S3DCF1   A0A0Q9XF11   A0A0K2VI16   E2B105   A0A154PEB2   A0A1B6KN33   A0A3B0KVC3   A0A2S2NBN6   A0A1W4VG47   A0A2W1BIY5   A0A0P8Y537   A0A310SK85   A0A1W4VTF1  

PDB

5YVT     E-value=1.6113e-64,     Score=619

KEGG

101739299    K00030 isocitrate dehydrogenase (NAD+) [EC:1.1.1.41] | (RefSeq) probable isocitrate dehydrogenase [N

GO

GO:0006099   GO:0004449   GO:0000287   GO:0051287   GO:0005739   GO:0016616   GO:0006102   GO:0005488   GO:0005515   GO:0003677   GO:0004003   GO:0005634   GO:0006289   GO:0016286   GO:0055114  

Subcellular location

Mitochondrion  

Length:

157

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.04426

Exp number, first 60 AAs:

0.01754

Total prob of N-in:

0.06520

outside

1  -  157

 

 

Pi

26.975232

Theta

27.502831

Tajima's D

0.138315

CLR

0.220482

CSRT

0.411629418529074

Interpretation

Uncertain