SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO12759  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA007162
Annotation
PREDICTED:_nucleolar_protein_6_[Amyelois_transitella]
Full name
Nucleolar protein 6      
Location in the cell
Cytoplasmic   Reliability : 1.451 Nuclear   Reliability : 1.88
 

Sequence

CDS
ATGGTGAAACGAAAAAATGTCTCAATTTCCGAAGACGACGGGGAAAGTGGATTGATTAATGAAAATGGAAAAGTAATTTTTGAAGACAAGGAAAAGAAGAAACGTATAAAAACAAAAAGCTTATATCGACAGCCCACTGTGAATGAACTGAATCGGCTCCAGGAGACGGAGACTTTGTTTAACTCTAATTTGTTCCGACTGCAGGTAGAGGAAATACTACAGGAGGTTAAAGTTAAAGAGAAAGTTGAAAAACGGTTTCTACAATGGTTCACAGACTTTAAGAACCACTTAGACAGTATACCTACGGATGATACAGAGTATGACTTAACTGAACACACATTAACAAAAAAAATTAAAGTCAAACTACCTATCAGTGAAGAATTGAAGAAGACAAAATGCGTCTTCAAATTTCATAAGTTTGAAACTGTTGATATTGTTGGATCTTACGCATTAGGATGTGCGATTAATTCGAAATTAGTAGTTGACTTACAGATTACTGTACCGTCACAAACATATACCAAGAATGACTCAATTAATTACAGATATCACAAAAAACGTGCAGCCTACTTAGCTTATATAGCATCTTATTTGTCCAAAAGCGATATAATTGTAGATTTAAATTATTCATTCATTAATGGGTGCGAAACAAAACCTATATTAATATTAAAACCAGCCGGTAAACTGCAAAACCATTTATCGGTTCGAATAAATTTAGTATGTGACACTGACACATTTAAGTTACATAGATTCAGCCCTAAACGGAACAATTTACGGCAATCTTGGTTGTTCTCGACAACAGAAAGTGAAGAAACTGATTCCCCAACACCATATTACAATAGCAGCATATTATATGACGTTACAGCTTTAAATAACGAAAAGCTGTTGAGAGATACTTTACTGAACAGTGAGAATTTGAAGCAGGCTGTGGTGCTACTGAAGATTTGGTTGCGTCAAAGAAACATACCTATTTCAGGCCAAATAGTTAATAACATTGTTGTATATTACGTGCAAACAAAAAGAGTAAATAACATCATGAGCAGTTATCAGATTGTAAGGAATATTTGGATAGCATTGAAAACATCAGAATGGGACAAGAAAGGTATCTCACTATGCAAAGCCGCAGATGCTACTCCATCCCTTGAAGAATTCCACCAAAATTTTCCTATAGTATTTATAGACAGCACAGGATACTACAATATATGCTGGCAAATTTGTAAAGGGACATATTACGCACTGAAGAGAGAATGTGCCTTAGCTGTGGAAATGCTTGATAATGTGAAAATAAATAGTTTTATACCACTGTTTATGACACCAGTTAAAATGCTCATGAAATTTGATCATATATTGAGATTTAAAAATATGGAACTTCTTAAAACATCAGTCCTTGATAAAGTATCGAAGGATGACAAATTAAATTATGGCTTGGATCGACTCATGCTTGTCACGGACACAGTGTATTCATTACTTGCTAAAGGACTCGGGGATAGAGTTCATTTGATACTGCAGATGGTAGAAGCTGACTTCACATGGCCTGTAAAGAAAGTATTGAGTGCAGCTAAAACTGACAGCTGTTATGAAGAAAAATTAGCATTTGGTCTGATATTGAATAAAGATAATGCTTTAAATCCTGTTGAAAAAGGTCCCCCGGCCAATTTGCCTGAAGCATTGGAATTTAGGGCGTTCTGGGGAGACAAATCCGAACTACGTCGGTTCCAAGACGGCTCTATAACCGAGACCTGCGTGTGGGAAGGAGAGGCCACAGCAGAAAGGAGAGGCATCACTAAACAGATAATTAACTATCTAATGGATTTGAAGTATGGTGTGAAAGGTTCAGATTTGTTTCACGTGATGGATCAACTGGACAGCGTGCTGGTCCGCAAGCAGTACGCCGGGGAGTCCAGCGCCCATTGCGAAGAAGCCTGCCTCGATGTGCTCAGAGCATTCGACGAGCTCAGGAGGGACCTCAGGCAGCTCACCGAGCTGCCCTTGGACATCAGTGCTGTTTACGGCACGTCGTCAGTGTTCAGCTACAGCAGGCCGGTGCCCCCGGTGGCCCGGCCCGCGCCCCGCCAGCCCTACCGGCGCGCCGGGGCCTGTCTGCTGAAGCAGGCCAGCAGGAGGGACGGGCTGCCCTCGCTGCCGCACTACACGCCCGTCTCCAGAGCCGTCATCGAACTTGGACACAGCGGCAAGTGGCCCGGCGACATTGAAGCCTTCCGCTGCCTGAAAGCCGCCTTCCACCTCCAGATATCCGACCGCCTCACCGAGCAGTACTCGTTGATAACGCACGCGTATCCCTCCCACGTGGACGTGCTGAAGAACGGCCTGGTCTTCCGCTTGGCCATCGCTCATCCCAAAGAAATAACTCTTCTGAAGAGGGAGATAGAAAACGGAGTGGTGAAGCACAAGGACAGCGAGGAGAGTGCGCGGCTGCAGAGGGACACGCAGCTGATGCCGCGGCTCAGGGGCGCTCTGCACGGGTTGCACCAGAAGTACCCGGCCTTCGGTCCGACGGCGTGTCTGTTCAAGCGCTGGCTGTCCTCCCACCTGCTCTCCCCCCCGCACTTCCCCTCCGTGACGGCGGAGCTGATGGCGGCGACCGTGTTCCTCCACCCCCAACCCTTCACGCCCCCCACTCAACCCACCATCGGCCTGTTCCGGGTCCTAAGGCTGCTGGCTGCAACCGACTGGACGAGCGAGGTCTTCGTGCTGGACTTCAATGATGATCTGACCCGTGAACAGATAACAGAGTTGGAGCAGGCGGCTCGCGCCGACCCGCGCGGTCGGAGCGTGTGCATAGTGACGGCACAGGAGCGCGAGGTGGGACTCGCGTGCGAGCCCGGGCCTCCGCCCCCGGCGCTCCGCAGGGCGCAGGCGCTGGCCGCGAGCGCCCTCGCCTACCTCGAGAACAGCCTGCTCAATGAATTCAATGACAATCTGCTTCCCATGTTCGTCCCGAGTCTGTCGGAGTACGACGTGCAGATCGTGCTGCACCCCAGCCTGGTCCCCGAGTGGGCGGAGCGGGTGTGCGCCCCCCCGCGCCGCCGCCCCCCCACACCGCACGTGGGGGACGAGCTCATACCGGTCGTGGACTTCCATCCCGTGCTCACATACCTGGATGACTTGAGGAGCGCCTACGGTGACTTCGCTGTGTTCTTCCACGACCTGTACGGCGGCGAGGTTATCGCTGTCTTGTGGAAGCCCGATGTCGACGAGTACGAAGATTTCCAGGCTCTGAACGCGAACGCTTTAATACCGGAGACAGTGGACGGCGAGACGAGATACAAAGTGAACAAAGAAGCTATAATTGAGGACTTTAGAATCCTAGGACAAGGCCTGGTCAAGAGTGTTAATGTTTTGTGA
Protein
MVKRKNVSISEDDGESGLINENGKVIFEDKEKKKRIKTKSLYRQPTVNELNRLQETETLFNSNLFRLQVEEILQEVKVKEKVEKRFLQWFTDFKNHLDSIPTDDTEYDLTEHTLTKKIKVKLPISEELKKTKCVFKFHKFETVDIVGSYALGCAINSKLVVDLQITVPSQTYTKNDSINYRYHKKRAAYLAYIASYLSKSDIIVDLNYSFINGCETKPILILKPAGKLQNHLSVRINLVCDTDTFKLHRFSPKRNNLRQSWLFSTTESEETDSPTPYYNSSILYDVTALNNEKLLRDTLLNSENLKQAVVLLKIWLRQRNIPISGQIVNNIVVYYVQTKRVNNIMSSYQIVRNIWIALKTSEWDKKGISLCKAADATPSLEEFHQNFPIVFIDSTGYYNICWQICKGTYYALKRECALAVEMLDNVKINSFIPLFMTPVKMLMKFDHILRFKNMELLKTSVLDKVSKDDKLNYGLDRLMLVTDTVYSLLAKGLGDRVHLILQMVEADFTWPVKKVLSAAKTDSCYEEKLAFGLILNKDNALNPVEKGPPANLPEALEFRAFWGDKSELRRFQDGSITETCVWEGEATAERRGITKQIINYLMDLKYGVKGSDLFHVMDQLDSVLVRKQYAGESSAHCEEACLDVLRAFDELRRDLRQLTELPLDISAVYGTSSVFSYSRPVPPVARPAPRQPYRRAGACLLKQASRRDGLPSLPHYTPVSRAVIELGHSGKWPGDIEAFRCLKAAFHLQISDRLTEQYSLITHAYPSHVDVLKNGLVFRLAIAHPKEITLLKREIENGVVKHKDSEESARLQRDTQLMPRLRGALHGLHQKYPAFGPTACLFKRWLSSHLLSPPHFPSVTAELMAATVFLHPQPFTPPTQPTIGLFRVLRLLAATDWTSEVFVLDFNDDLTREQITELEQAARADPRGRSVCIVTAQEREVGLACEPGPPPPALRRAQALAASALAYLENSLLNEFNDNLLPMFVPSLSEYDVQIVLHPSLVPEWAERVCAPPRRRPPTPHVGDELIPVVDFHPVLTYLDDLRSAYGDFAVFFHDLYGGEVIAVLWKPDVDEYEDFQALNANALIPETVDGETRYKVNKEAIIEDFRILGQGLVKSVNVL

Summary

Subunit
May be associated with rRNA.
Similarity
Belongs to the NRAP family.
Keywords
Nucleus   RNA-binding   Complete proteome   Reference proteome  
Feature
chain  Nucleolar protein 6
EMBL
BABH01031586    BABH01031587    NWSH01001097    PCG72623.1    KZ150013    PZC75031.1    + More
PCG72624.1    KQ458981    KPJ04463.1    RSAL01000164    RVE45335.1    KQ460882    KPJ11465.1    JTDY01001960    KOB72442.1    KK853055    KDR11961.1    NEVH01010479    PNF32459.1    PNF32461.1    KQ982373    KYQ57033.1    KQ979433    KYN21583.1    KK107459    EZA50366.1    GL888932    EGI57170.1    KQ981673    KYN38386.1    GL763802    EFZ19280.1    ADTU01011325    KQ976500    KYM83169.1    GL444015    EFN61369.1    KQ978068    KYM97551.1    KQ435850    KOX70863.1    KQ414929    KOC59379.1    DS235170    EEB12823.1    GECZ01002714    JAS67055.1    LBMM01009293    KMQ88240.1    KQ434778    KZC04307.1    NNAY01003650    OXU19050.1    GEDC01004796    JAS32502.1    PNF32456.1    AAZX01006551    KL669617    KFW76861.1    KB103229    ELK34286.1    ABQF01020569    ABQF01020570    KK937313    KFQ47931.1    AAPE02037196    GFXV01001303    MBW13108.1    GGMS01003394    MBY72597.1    GFFV01000567    JAV39378.1    KL872051    KGL94426.1    ABLF02023358    AEMK02000074    DQIR01279817    HDC35295.1    LSYS01008655    OPJ68096.1    AMGL01048335    GEDV01010288    JAP78269.1    JH882068    ELR51092.1    GL193390    EFB29188.1    BC142238    AAI42239.1    ACTA01018097    KZ506871    PKU38085.1    KB320502    ELW70261.1    BC070577    AAEX03007940    QUSF01000029    RLW00010.1    AGTP01043493    KK404453    KFQ81439.1    AANG04001372    AC213332    KL448108    KFO80415.1    KB030846    ELK09076.1    KL217143    KFV74079.1    AAGW02033462    JT413292    AHH40188.1    KV467282    OCT56411.1    BEZZ01000910    GCC36924.1    GFAC01005714    JAT93474.1    KL218307    KFP04284.1    NDHI03003365    PNJ81947.1    BC088522    GFPF01013001    MAA24147.1   
Pfam
PF17407   Nrap_D6        + More
PF03813   Nrap
PF17403   Nrap_D2
PF17406   Nrap_D5
PF17405   Nrap_D4
PF17404   Nrap_D3
Interpro
IPR035367   Nrap_D2        + More
IPR035082   Nrap_D1       
IPR005554   NOL6/Upt22       
IPR035371   Nrap_D6       
IPR035369   Nrap_D4       
IPR035370   Nrap_D5       
IPR035368   Nrap_D3       
PDB
5WYK     E-value=3.2667e-29,     Score=324

Ontologies

Topology

Subcellular location
  
Length:
1120
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.345000000000001
Exp number, first 60 AAs:
0
Total prob of N-in:
0.01536
outside
1  -  1120
 
 

Population Genetic Test Statistics

Pi
22.097349
Theta
19.599368
Tajima's D
-0.544928
CLR
11.257961
CSRT
0.234088295585221
Interpretation
Uncertain
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