Gene

KWMTBOMO12745

Annotation

integrase_core_domain_protein_[Lasius_niger]

Location

Bomo_Chr21(-):13630556-13631169      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.372

CDS

ATGAAAAATGCCAAATCTTGTGACACGCCCGCAAGTAGCGATTCAAAGTCGATACAGGAAACTGCCCAGGAAAAGGAATATCCCCATAGGGAAGCACTGGGAAGTTTACTGTACCTGTCTACCAGAACCAGACCAGATATCGCACAAGCGGTCAATCTAGTTAGCAGGAAGGTAGAAAACTCCACTAGAGAAGACGTCACAAAAGTCAAGAAAATATTCAAATATTTAGTGGGAACCAAAGAGAAAGGCATTTTGTTCAAACGAAATAAACCGATAGAGAATATCGATAGTTACAGAGACTCGGATGATGCTGGAGATCCAAAACGCAAAGAAGCACTTCTGGCTCCGTGCTAA

Protein

MKNAKSCDTPASSDSKSIQETAQEKEYPHREALGSLLYLSTRTRPDIAQAVNLVSRKVENSTREDVTKVKKIFKYLVGTKEKGILFKRNKPIENIDSYRDSDDAGDPKRKEALLAPC

Uniprot

A0A0A9YBR9   A0A0A9Z091   A0A0A9ZF63   A0A0A9WDS7   A0A0A9W6J9   A0A0J7KC73   + More
A0A329RKZ4   A0A0A9WDA6   A0A0J7K689   A0A0A9X3Z4   A0A2P4X1D7   A0A1B6GCK5   A0A085MSK2   A0A1B6FNY3   A0A0A9YCF4   A0A1B6H4J4   A0A146M1T4   A0A1Y1JZ65   A0A146LHR9   V5GE66   H3H8R6   A0A3M6V7W3   A0A0J7MNS8   H3GB86   H3H8M0   H3G8C4   H3H5N2   A0A1B6KG29   A0A1Y1KNM9   A0A329RR24   A0A0A9W2F2   A0A146LRM9   H3GB40   A0A0J7JZ17   H3H9X3   A0A0J7N098   H3GB42   H3GAY4   W4F9V3   H3GBA8   A0A0V0G477   H3G6C9   A0A0N5E2R3   A0A2P4YCF8   H3GAW7   H3H8S0   B3Y003   A0A1Y1KC03   A0A1X7U3D2   H3GZJ4   A0A0J7K9V7   A0A085MTW9   A0A1X7STY0   X1WST7   A0A1X1QS81   H3GAW9   H3H1B3   H9JF18   A0A151RHK1   A0A1X7SRH6   H3H922   A0A0A9XUC7   H3HA29   A0A139WJX6   H3GAT9   H3GY81   A0A2P4YV10   H3H949   A0A0B1PJ57   A0A085MSN1   A0A1Y1K7G3   A0A151SEX3   H3GIF1   K7JAV0   H3HAB2   A0A151U0S6   A0A2N9GS71   A0A151S124   A0A1B8AAN0   A0A087HHB1   H3GB53   X1WMK8   A0A182HAB6   A0A1Y1LVN7   H3H5F5   H3H9T4   A0A2P4WYA4   A0A3Q7HLK4   A0A2N9GKY6   A0A2P4YBB4   A0A1Y1NM77   A0A0A9X817   H3H6A9  

Pubmed

25401762    28186564    24929829    26823975    28004739    16946064    + More
19121390    22057054    18362917    19820115    20075255    26483478    22660326   

EMBL

GBHO01013072    JAG30532.1    GBHO01005715    JAG37889.1    GBHO01003079    JAG40525.1    + More
GBHO01040574    JAG03030.1    GBHO01040573    JAG03031.1    LBMM01009639    KMQ87973.1    MJFZ01000952    RAW24002.1    GBHO01037840    JAG05764.1    LBMM01012772    KMQ86003.1    GBHO01031779    JAG11825.1    NCKW01017192    POM59370.1    GECZ01009601    JAS60168.1    KL367687    KFD60198.1    GECZ01017843    JAS51926.1    GBHO01016409    JAG27195.1    GECZ01000150    JAS69619.1    GDHC01004875    JAQ13754.1    GEZM01099971    JAV53080.1    GDHC01010945    JAQ07684.1    GALX01006157    JAB62309.1    DS567555    QLLG01000626    QKXF01000006    RMX62449.1    RQM18873.1    LBMM01027002    KMQ82250.1    DS567745    DS567497    DS566001    DS566383    GEBQ01029584    JAT10393.1    GEZM01078128    GEZM01078127    JAV63002.1    MJFZ01000618    RAW26780.1    GBHO01041007    JAG02597.1    GDHC01009233    JAQ09396.1    DS567087    LBMM01020254    KMQ83327.1    DS568207    LBMM01012672    KMQ86060.1    DS567139    DS566289    KI913645    ETV63694.1    DS568535    GECL01003258    JAP02866.1    DS568262    NCKW01003798    POM75488.1    DS566231    DS567564    AB378753    BAG68376.1    GEZM01093140    JAV56327.1    DS566082    LBMM01011114    KMQ87021.1    KL367655    KFD60665.1    ABLF02066511    LWTN01000174    ORU94050.1    DS566242    DS566098    BABH01033959    BABH01033960    KQ483738    KYP42039.1    DS567717    GBHO01019280    GBHO01019277    GBHO01019272    GBHO01014987    JAG24324.1    JAG24327.1    JAG24332.1    JAG28617.1    DS568300    KQ971338    KYB28117.1    DS566148    DS566071    NCKW01000038    POM81641.1    DS567770    KN538522    KHJ39825.1    KL367684    KFD60227.1    GEZM01090252    JAV57314.1    KQ483414    KYP53356.1    DS566011    AAZX01006115    AAZX01021021    DS568418    CM003604    KYP72919.1    OIVN01002268    SPD02134.1    KQ483498    KYP48513.1    LYXU01000014    OBS17533.1    CM002870    KFK41513.1    DS567227    ABLF02066512    JXUM01122536    KQ566615    KXJ69965.1    GEZM01048830    JAV76370.1    DS566328    DS568148    NCKW01020291    POM58281.1    OIVN01002376    SPD03107.1    NCKW01004050    POM75106.1    GEZM01002084    JAV97376.1    GBHO01028636    GBHO01028635    JAG14968.1    JAG14969.1    DS566528   

Proteomes

UP000036403    UP000251314    UP000005238    UP000282087    UP000286097    UP000019040    + More
UP000046395    UP000007879    UP000007819    UP000193579    UP000005204    UP000075243    UP000007266    UP000002358    UP000091967    UP000069940    UP000249989    UP000004994   

PRIDE

B3Y003    H9JF18   

Pfam

PF07727   RVT_2        + More
PF13976   gag_pre-integrs
PF00665   rve
PF00098   zf-CCHC

Interpro

IPR039537   Retrotran_Ty1/copia-like        + More
IPR013103   RVT_2       
IPR025724   GAG-pre-integrase_dom       
IPR036397   RNaseH_sf       
IPR012337   RNaseH-like_sf       
IPR001584   Integrase_cat-core       
IPR036875   Znf_CCHC_sf       
IPR001878   Znf_CCHC       

SUPFAM

SSF53098   SSF53098        + More
SSF57756   SSF57756       

Gene 3D

3.30.420.10    

ProteinModelPortal

A0A0A9YBR9   A0A0A9Z091   A0A0A9ZF63   A0A0A9WDS7   A0A0A9W6J9   A0A0J7KC73   + More
A0A329RKZ4   A0A0A9WDA6   A0A0J7K689   A0A0A9X3Z4   A0A2P4X1D7   A0A1B6GCK5   A0A085MSK2   A0A1B6FNY3   A0A0A9YCF4   A0A1B6H4J4   A0A146M1T4   A0A1Y1JZ65   A0A146LHR9   V5GE66   H3H8R6   A0A3M6V7W3   A0A0J7MNS8   H3GB86   H3H8M0   H3G8C4   H3H5N2   A0A1B6KG29   A0A1Y1KNM9   A0A329RR24   A0A0A9W2F2   A0A146LRM9   H3GB40   A0A0J7JZ17   H3H9X3   A0A0J7N098   H3GB42   H3GAY4   W4F9V3   H3GBA8   A0A0V0G477   H3G6C9   A0A0N5E2R3   A0A2P4YCF8   H3GAW7   H3H8S0   B3Y003   A0A1Y1KC03   A0A1X7U3D2   H3GZJ4   A0A0J7K9V7   A0A085MTW9   A0A1X7STY0   X1WST7   A0A1X1QS81   H3GAW9   H3H1B3   H9JF18   A0A151RHK1   A0A1X7SRH6   H3H922   A0A0A9XUC7   H3HA29   A0A139WJX6   H3GAT9   H3GY81   A0A2P4YV10   H3H949   A0A0B1PJ57   A0A085MSN1   A0A1Y1K7G3   A0A151SEX3   H3GIF1   K7JAV0   H3HAB2   A0A151U0S6   A0A2N9GS71   A0A151S124   A0A1B8AAN0   A0A087HHB1   H3GB53   X1WMK8   A0A182HAB6   A0A1Y1LVN7   H3H5F5   H3H9T4   A0A2P4WYA4   A0A3Q7HLK4   A0A2N9GKY6   A0A2P4YBB4   A0A1Y1NM77   A0A0A9X817   H3H6A9  

KEGG

101736913    no KO assigned | (RefSeq) uncharacterized LOC101736913

GO

GO:0003676   GO:0000943   GO:0015074   GO:0008270   GO:0004491   GO:0016021  

PANTHER

PTHR11439  

Length:

117

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.50726

inside

1  -  117

 

 

Pi

3.122597

Theta

11.764491

Tajima's D

-2.038829

CLR

0

CSRT

0.0104494775261237

Interpretation

Uncertain