SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO12743  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA007170
Annotation
Conserved_oligomeric_Golgi_complex_subunit_5_[Operophtera_brumata]
Location in the cell
Nuclear   Reliability : 3.078
 

Sequence

CDS
ATGGAAGCAAAAGATGTTTGTGTCGAAATAGAAAATGATGAATTTTACAGTAAGTTCCTAAACGATTCAATAAAGCCACTGGTCGGGGAAAATTTATCAGTCACCGATCAAGTCACTAAACTTGCCCAAGGTATCGAAAAACTCGGGAAAAGCTTGGAAAAGCAAGTACTGGCTAAACACAACGACCTTCTAACACAGGCGAGTCACATTTCCGATTTGGAAAACACGTTGGAGTCGGTACAATCGCAAGTTCAAAACCTATTACGTGGTGCCGAAAAATTAAAAGAAAGAGTACACACGCCTTATTACGCACTTGAAAATCAGACTATTATGCTAGAACGAGTTCAAACAACATGTAATCTGCTAAGACATGCATCCAAAATATTAACTCTGTGGAACAAACTCCGAACCATTAAAGATAACCCTTCAAAGGAAGCTATCATACTTTTTGATCTTAATGAACTAATCGGTGATTACGATTTCCAAGGCATTATTATATTAGAAGAGATTTTGAGTGCCGTTAATCAAAGAAGAAATGAATTATTAAATGAATCAACTAATTCACTTCAATCCAGTTTACTAAATGGAGACAAAGCAAAACTATTGCAATGCTTTAGAGTTTTTCAAAACTTACAATGTACTGAAGAACAAATTAAAAAAACAGTTGACAACATGTTAAATGATTTGAAAAAGGAAATTAATTCGGCTCTCAATGTGCAGATGGTATCCATTGAAGTCAAAAAGTCTAGTTCAGGGAGAGTGGCTCCAGGCAAAGCAAACATAATGAATGCACAAGATTTTAAATTAAAACTCTGGGATAACATTGATAAACTATTCAAAGTTGATATATACAATAGCTGTACAAAGGTTATAATGTTGCAAACTGTAATGAATGAATTGCACGCTATCGGAAACTTCAGAACTATCGCTAAGAAATTCTGGTCTGACTTATGCCTGGTATTTAGTAATGAACTTGAAAAGAGTTCCTTGACTGTTAACCAGTCTGTAGAAATTGACTATCCTAAACTATTGAAATGCTTTAATGATCTTCTCTCAAAACTCAAATGTAAAGATTTGGAACTAAACAGATCCTGTTTAATTAAATGGGAGAACTCTTTCTTATCAAAGTCTTTGGGTAAATTATTGGAGCCTGTTCGTAGTATATGGCATTTAAATCAAGTACCAACAATGGATCAGATTGACAATGCTGTTAGAGTTATATCAGAAGCATTGAGCATTTCTCTTGGAGATAAGCAGCTGAGCATAAGCTTGGCCAACAGCGTTGCCAAGTCAATCAAGCAGATGAATGTTGAAGCCGAACAGAGGCTGTCAATGGATAATGATGTCGCCCAAATCATTGAATCACCCACCAGCTCACAACAGAAGAATGCTGATCTTTGCAATAGCTTGTATTACTTCTCAACTCAAATTAAAAGAGTTCTCTTGAATATGAATTCAATGTTGCCTCAGGAGAGTGTCCAAATTGTACATAATAGTCTAAAAGACATTTCTAGTTTACCTGTACTTCTAATGTTTGCTGAATCAATTAAGAATTCCTTGTATATTATCTTAATGACATTACATGATGAGCCAGATCTAATCAGAGCTGATGACCCGATTGGCAAGAGTCTATCTTGTTCTCCTTACATGAAAGAATTACAACAGTTTGTGTCTAGATGCAAAGATATTTACTTGTCCATGTATAACGAAAAACCAGCATTGAATGAATGTTATATGAACATAGCAAGATCTTGTATTGAACGGTTTATTTACCACATTTGTAATGTCCGCCCTCTTAGTAAATTCGGTAGGGTTAAACTACAAATTGATTGTAAGTATCTCGAAGTAGCATTGTCTCCATTAGTTAGCGACATGACCGAAATTGGAGATTATTATAGACAACTAAAAGCTCTGCATCTGTTATTGGAAAAAACACCTCAAGAAATAGCAAAGAGTCAATCGGAAGGTGCGAGTCTGCCTTATTCTATGGTCATGATGTTTTTATTTTCCCATGCAGGACATCAACTCCTTGCACCCCATACCTGTGCAGGGTGGAATATTCAGAAATTGATGCAGTGGTTAGATACGCATAGAAGTGAAAAAGAGAGGCTAGATTTCGTAGCCGGTGCTCTACAGAGATACCAAAATCATATCAGACAGAATCAGATAGCGAGTTACGATGAAGTCTACCCTGTGTTGCTACAAATGCTAGAAGATGGTAGAAATTCTTTGAGAATTTAA
Protein
MEAKDVCVEIENDEFYSKFLNDSIKPLVGENLSVTDQVTKLAQGIEKLGKSLEKQVLAKHNDLLTQASHISDLENTLESVQSQVQNLLRGAEKLKERVHTPYYALENQTIMLERVQTTCNLLRHASKILTLWNKLRTIKDNPSKEAIILFDLNELIGDYDFQGIIILEEILSAVNQRRNELLNESTNSLQSSLLNGDKAKLLQCFRVFQNLQCTEEQIKKTVDNMLNDLKKEINSALNVQMVSIEVKKSSSGRVAPGKANIMNAQDFKLKLWDNIDKLFKVDIYNSCTKVIMLQTVMNELHAIGNFRTIAKKFWSDLCLVFSNELEKSSLTVNQSVEIDYPKLLKCFNDLLSKLKCKDLELNRSCLIKWENSFLSKSLGKLLEPVRSIWHLNQVPTMDQIDNAVRVISEALSISLGDKQLSISLANSVAKSIKQMNVEAEQRLSMDNDVAQIIESPTSSQQKNADLCNSLYYFSTQIKRVLLNMNSMLPQESVQIVHNSLKDISSLPVLLMFAESIKNSLYIILMTLHDEPDLIRADDPIGKSLSCSPYMKELQQFVSRCKDIYLSMYNEKPALNECYMNIARSCIERFIYHICNVRPLSKFGRVKLQIDCKYLEVALSPLVSDMTEIGDYYRQLKALHLLLEKTPQEIAKSQSEGASLPYSMVMMFLFSHAGHQLLAPHTCAGWNIQKLMQWLDTHRSEKERLDFVAGALQRYQNHIRQNQIASYDEVYPVLLQMLEDGRNSLRI

Summary

EMBL
BABH01031554    ODYU01000681    SOQ35868.1    NWSH01000508    PCG75973.1    KZ150005    + More
PZC75244.1    GDQN01008378    JAT82676.1    JTDY01003154    KOB70056.1    KQ458981    KPJ04480.1    KQ460882    KPJ11485.1    AGBW02009157    OWR51501.1    KQ971342    EFA03811.1    APGK01051816    KB741207    ENN72885.1    KB632327    ERL92500.1    KQ434772    KZC03917.1    KK107249    EZA54454.1    GEZM01073515    GEZM01073513    JAV65031.1    KQ759843    OAD62594.1    GL450531    EFN80826.1    KQ977294    KYN03898.1    GL436457    EFN71938.1    QOIP01000013    RLU15460.1    KQ981693    KYN37788.1    ADTU01018869    KQ976692    KYM77877.1    KZ288311    PBC28457.1    KQ979182    KYN22325.1    KQ982805    KYQ50482.1    KQ414601    KOC69688.1    LBMM01001444    KMQ96308.1    HACG01021192    CEK68057.1    KK852936    KDR13588.1    GEDC01010888    JAS26410.1    GEDC01026392    JAS10906.1    PYGN01000088    PSN54614.1    AXCM01002346    RQTK01000074    RUS88750.1    APCN01000123    GBHO01037945    JAG05659.1    AAAB01008960    EAA11954.3    NEDP02005326    OWF41946.1    GL732538    EFX83109.1    GDIQ01121665    GDIQ01052943    JAL30061.1    GDIQ01173892    JAK77833.1    GDIQ01146109    JAL05617.1    GDIP01130889    GDIP01105776    LRGB01002860    JAL72825.1    KZS05845.1    AXCN02000448    GDIQ01067747    JAN26990.1    GDIP01085580    JAM18135.1    ADMH02002096    ETN59253.1    JH816384    EKC27050.1    GDIQ01069289    JAN25448.1    KQ417118    KOF93628.1    AJWK01024684    DS232397    EDS41107.1    GL888406    EGI61466.1    GGFK01006190    MBW39511.1    KB203946    ESO82323.1    NEVH01019410    PNF22424.1    KQ435881    KOX69822.1    GFDL01009672    JAV25373.1    GDIQ01238192    JAK13533.1    AMQN01014767    KB311259    ELT89629.1    GANO01001781    JAB58090.1    ATLV01023198    KE525341    KFB48546.1    GDIQ01232128    JAK19597.1    GGFL01003442    MBW67620.1    GGFL01003419    MBW67597.1    GDIP01022809    JAM80906.1    JXUM01107104    KQ565112    KXJ71324.1    GDRN01109152    GDRN01109151    JAI57119.1    JXUM01008935    KQ560272    KXJ83395.1    LSYS01005240    OPJ77754.1    AKCR02000012    PKK29029.1    CH477330    EAT43371.1    GFTR01007959    JAW08467.1    JT406056    AHH37432.1    HADW01008544    HADX01015657    SBP37889.1   
Pfam
PF10392   COG5        + More
PF00069   Pkinase
Interpro
IPR019465   Cog5        + More
IPR000719   Prot_kinase_dom       
IPR011009   Kinase-like_dom_sf       
IPR008271   Ser/Thr_kinase_AS       
IPR017441   Protein_kinase_ATP_BS       
SUPFAM
SSF56112   SSF56112       

Ontologies

Topology

Length:
746
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.0394
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00025
outside
1  -  746
 
 

Population Genetic Test Statistics

Pi
17.051545
Theta
11.722323
Tajima's D
1.263994
CLR
1.27115
CSRT
0.742712864356782
Interpretation
Uncertain
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