Gene

KWMTBOMO12734  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA007192

Annotation

PREDICTED:_LOW_QUALITY_PROTEIN:_RNA-binding_protein_NOB1_[Bombyx_mori]

Location

Bomo_Chr21(+):13548330-13549750      View in EpiBrowser

Full name

RNA-binding protein NOB1      

Location in the cell

Nuclear   Reliability : 4.08

CDS

ATGCCGAAGTCTATCAAGCATCTGATTGTGGATACCTCTGCATTCATAAGGGCGGCAAACCTTCAAGACATTGCTGAAAATGTTTATACTATACAAGAGGTTATTGATGAAATAACTAATGATAGGCAAAGAAAAAAGCTCGTTGTCCTTCCATACGACTTAAAAGTCAAGGATGTCTTCGCAGATAACATAAAATTCATTACTGAATTCTCGAAGAAAACAGGTGATTATTCTAGCCTCTCTGCTACAGATATTAAGGTTATGGCACTGACCTACCAGCTAGAGAAGGAGAAGGTTGGCGGTACGGAACATCTCAAAGATGAACCGACTATGCAAAAATCTGTTAAAGTTACAGGATTGGCTGGGTTTAACCTTCATCCCAATTATGAAAATGCCAATCAGGAAACAGGTGAGAAAGACTCTAATGCAAACAATAACAAAGAGACCAGTGAACCTTTACAACAACCCATAGGAGAGACTGTGAATGTTGAAACTGGAGAGTCATTTGAAGTCAAACACCAACAAAACTGTCAAACAACAACAAATGAAACTGATGATGATAAACTGGCTGAAGAAATTTCAAAACAAATCAATGATATGGATTTGAAAGATGACAAAGTTGATGAGCTAATGGTTAAAGTCTCTGATGAAGAGGCTACAGACAGCTATGATGATGATGATGATGAAGACGAGACAGATAGCGATGGTGGAGAATGGATCACAACCAAAAATTTGGCTGAAAAACGAAAAGAGATGGAACTTGGTGAATTCAAAGAAAAAGATGTTGAAGTTGCCTGCATCACTTCGGACTTTGCAATGCAAAATGTTTTAAAGCAGATAGGACTAAATGTTACATCAATAGATGGAAGAATTATAAGACAATTACGTACATTTATTTTTCGTTGCACAACCTGTTTCAAAACAACTAGTGTAATGACAAAACTGTTCTGTCCTAAATGTGGTCATGCAACTTTAAAAAAAGTTGCAGTGAGTATTGATGAAGATGGTAATCAAAGAATACATATAAATGGACGTAAACCTTTAACAGCAAGAGGAAAAAGATTTAGTTTACCTACACCAAAAGGTGGTCAACATTTTCAATACCCAATTTTAACTGAAGACCAGCATATACACAAAAGATTTGTTACCAAATTAGCAAGAAACAAAACAAATGCTCTAGATCCTGATTATACTGCAGGATTTTCTCCATTCGCAATGAAAGATGTGAATTCCAAATCGGCTGTCTTGGGGGTGCGTGCCAACAATCAGGACATAAAATATTGGATGAAGCATTATTCTAAAGGAAAGAAGAAATAA

Protein

MPKSIKHLIVDTSAFIRAANLQDIAENVYTIQEVIDEITNDRQRKKLVVLPYDLKVKDVFADNIKFITEFSKKTGDYSSLSATDIKVMALTYQLEKEKVGGTEHLKDEPTMQKSVKVTGLAGFNLHPNYENANQETGEKDSNANNNKETSEPLQQPIGETVNVETGESFEVKHQQNCQTTTNETDDDKLAEEISKQINDMDLKDDKVDELMVKVSDEEATDSYDDDDDEDETDSDGGEWITTKNLAEKRKEMELGEFKEKDVEVACITSDFAMQNVLKQIGLNVTSIDGRIIRQLRTFIFRCTTCFKTTSVMTKLFCPKCGHATLKKVAVSIDEDGNQRIHINGRKPLTARGKRFSLPTPKGGQHFQYPILTEDQHIHKRFVTKLARNKTNALDPDYTAGFSPFAMKDVNSKSAVLGVRANNQDIKYWMKHYSKGKKK

Description

May play a role in mRNA degradation.

Similarity

Belongs to the NOB1 family.

Uniprot

H9JCE7   A0A0L7KTT2   A0A0N1PIC6   A0A1E1WBP7   A0A2H1VJX2   A0A194QHS5   + More
A0A2A4JWH2   A0A212FCL9   A0A3S2N696   A0A2W1BR52   S4PX82   A0A1E1WHZ7   A0A1B6LHL0   A0A1B6DT19   A0A151XFV5   E2APE0   A0A2J7RF20   D6WLV0   J3JU89   A0A067RGR6   A0A158NIK3   A0A1Y1L034   A0A0J7KMS1   A0A3Q0IYE2   A0A3L8DEY2   A0A151I691   E0VNE2   A0A1B6G0P2   A0A336LWY3   A0A1J1HSE8   Q0IFE8   A0A1S4FB44   A0A069DU25   A0A224XNY1   A0A182H7M0   A0A1L8DST6   A0A023ESB4   A0A0A9WRP9   A0A146L0L7   A0A1Q3F403   A0A0V0G7U6   A0A2M4BNQ1   A0A1S3H696   B0X058   A0A2M4BNY2   A0A2M4BP26   A0A2M3Z653   W5JP45   A0A2M4BP98   A0A2M4BP68   A0A0A1WMB3   A0A2M4ABD8   A0A2M4BPJ5   A0A2M4BNP1   A0A1B0CBB9   A0A2M4CQR2   A0A2M3ZHR2   B4NEH5   A0A0K8UDT8   A0A182FH43   A0A1B0AQF4   A0A1A9XSL0   D3TQ97   A0A1B0FQ38   A0A1A9UEH5   A0A182JVR8   A0A131XK52   W8B4Z8   A0A182PNJ0   Q5XHI8   A0A3F2Z485   A0A182SQA5   U5EVQ6   L7M5D8   A0A182XFG2   A0A131YTT0   A0A182UDZ0   A0A087UBF4   F6UJS5   A0A401SBH6   A0A3B0J7H4   F4WN08   A0A182V847   A0A3B4DCK0   A0A182I837   A0A151IWW9   U3FNL9   A0A3B4TVE9   A0A182VX29   A0A182L7Q1   Q7PSM3   H3AE06   A0A182M930   A0A182J1F0   A0A195BCV7   A0A0N8JYR2   A0A1W5AUK8   G3WRR8   C1C2G7   A0A2L2Y0Q2  

Pubmed

19121390    26227816    26354079    22118469    28756777    23622113    + More
20798317    18362917    19820115    22516182    23537049    24845553    21347285    28004739    30249741    20566863    17510324    26334808    26483478    24945155    25401762    26823975    20920257    23761445    25830018    17994087    20353571    28049606    24495485    27762356    25576852    26830274    25243066    30297745    21719571    20966253    12364791    14747013    17210077    9215903    21709235    26561354   

EMBL

BABH01031549    JTDY01005870    KOB66530.1    KQ460882    KPJ11494.1    GDQN01006689    + More
JAT84365.1    ODYU01002960    SOQ41125.1    KQ458981    KPJ04490.1    NWSH01000508    PCG75984.1    AGBW02009157    OWR51495.1    RSAL01000317    RVE42596.1    KZ150005    PZC75240.1    GAIX01005493    JAA87067.1    GDQN01004411    JAT86643.1    GEBQ01016857    JAT23120.1    GEDC01017549    GEDC01008485    JAS19749.1    JAS28813.1    KQ982179    KYQ59282.1    GL441524    EFN64685.1    NEVH01004414    PNF39433.1    KQ971343    EFA03398.1    APGK01040876    BT126802    KB740984    KB631899    AEE61764.1    ENN76325.1    ERL86972.1    KK852514    KDR22203.1    ADTU01016889    ADTU01016890    GEZM01068322    JAV67013.1    LBMM01005394    KMQ91554.1    QOIP01000009    RLU18449.1    KQ978500    KYM93619.1    DS235336    EEB14898.1    GECZ01013774    JAS55995.1    UFQT01000264    SSX22562.1    CVRI01000020    CRK91000.1    CH477351    EAT42877.1    GBGD01001479    JAC87410.1    GFTR01006286    JAW10140.1    JXUM01116555    KQ565997    KXJ70465.1    GFDF01004585    JAV09499.1    GAPW01001460    JAC12138.1    GBHO01033100    GBRD01006597    JAG10504.1    JAG59224.1    GDHC01017827    JAQ00802.1    GFDL01012760    JAV22285.1    GECL01002610    JAP03514.1    GGFJ01005566    MBW54707.1    DS232229    EDS37933.1    GGFJ01005581    MBW54722.1    GGFJ01005582    MBW54723.1    GGFM01003248    MBW23999.1    ADMH02000773    ETN65088.1    GGFJ01005662    MBW54803.1    GGFJ01005663    MBW54804.1    GBXI01014739    JAC99552.1    GGFK01004784    MBW38105.1    GGFJ01005567    MBW54708.1    GGFJ01005565    MBW54706.1    AJWK01004998    AJWK01004999    GGFL01003441    MBW67619.1    GGFM01007239    MBW27990.1    CH964239    EDW82144.1    GDHF01027598    JAI24716.1    JXJN01001847    EZ423599    ADD19875.1    CCAG010020168    GEFH01002071    JAP66510.1    GAMC01012903    JAB93652.1    BC084069    CM004473    AAH84069.1    OCT82379.1    GANO01001759    JAB58112.1    GACK01006720    JAA58314.1    GEDV01006657    JAP81900.1    KK119094    KFM74693.1    GAMT01008256    GAMS01009286    GAMQ01004384    JAB03605.1    JAB13850.1    JAB37467.1    BEZZ01000174    GCC27694.1    OUUW01000003    SPP78047.1    GL888226    EGI64412.1    APCN01002616    KQ980842    KYN12325.1    GAMP01009610    JAB43145.1    AAAB01008817    EAA05352.6    AFYH01175268    AFYH01175269    AFYH01175270    AXCM01002109    KQ976513    KYM82393.1    JARO02005150    KPP67249.1    AEFK01034467    AEFK01034468    BT081046    ACO15470.1    IAAA01003966    LAA01776.1   

Proteomes

UP000005204    UP000037510    UP000053240    UP000053268    UP000218220    UP000007151    + More
UP000283053    UP000075809    UP000000311    UP000235965    UP000007266    UP000019118    UP000030742    UP000027135    UP000005205    UP000036403    UP000079169    UP000279307    UP000078542    UP000009046    UP000183832    UP000008820    UP000069940    UP000249989    UP000085678    UP000002320    UP000000673    UP000092461    UP000007798    UP000069272    UP000092460    UP000092443    UP000092444    UP000078200    UP000075881    UP000075885    UP000186698    UP000092445    UP000075901    UP000076407    UP000075902    UP000054359    UP000008225    UP000287033    UP000268350    UP000007755    UP000075903    UP000261440    UP000075840    UP000078492    UP000261420    UP000075920    UP000075882    UP000007062    UP000008672    UP000075883    UP000075880    UP000078540    UP000034805    UP000192224    UP000007648   

PRIDE

H9JCE7   

Pfam

PF08772   NOB1_Zn_bind        + More
PF17146   PIN_6
PF15017   WRNPLPNID
PF00071   Ras

Interpro

IPR033411   Ribonuclease_PIN        + More
IPR017117   Nob1_euk       
IPR014881   NOB1_Zn-bd       
IPR036283   NOB1_Zf-like_sf       
IPR039907   NOB1       
IPR039909   PIN_NOB1       
IPR002716   PIN_dom       
IPR033461   WRNPLPNID       
IPR027417   P-loop_NTPase       
IPR001806   Small_GTPase       
IPR005225   Small_GTP-bd_dom       

SUPFAM

SSF144206   SSF144206        + More
SSF52540   SSF52540       

Gene 3D

3.30.40.120    

CDD

cd09876  PIN_Nob1

ProteinModelPortal

H9JCE7   A0A0L7KTT2   A0A0N1PIC6   A0A1E1WBP7   A0A2H1VJX2   A0A194QHS5   + More
A0A2A4JWH2   A0A212FCL9   A0A3S2N696   A0A2W1BR52   S4PX82   A0A1E1WHZ7   A0A1B6LHL0   A0A1B6DT19   A0A151XFV5   E2APE0   A0A2J7RF20   D6WLV0   J3JU89   A0A067RGR6   A0A158NIK3   A0A1Y1L034   A0A0J7KMS1   A0A3Q0IYE2   A0A3L8DEY2   A0A151I691   E0VNE2   A0A1B6G0P2   A0A336LWY3   A0A1J1HSE8   Q0IFE8   A0A1S4FB44   A0A069DU25   A0A224XNY1   A0A182H7M0   A0A1L8DST6   A0A023ESB4   A0A0A9WRP9   A0A146L0L7   A0A1Q3F403   A0A0V0G7U6   A0A2M4BNQ1   A0A1S3H696   B0X058   A0A2M4BNY2   A0A2M4BP26   A0A2M3Z653   W5JP45   A0A2M4BP98   A0A2M4BP68   A0A0A1WMB3   A0A2M4ABD8   A0A2M4BPJ5   A0A2M4BNP1   A0A1B0CBB9   A0A2M4CQR2   A0A2M3ZHR2   B4NEH5   A0A0K8UDT8   A0A182FH43   A0A1B0AQF4   A0A1A9XSL0   D3TQ97   A0A1B0FQ38   A0A1A9UEH5   A0A182JVR8   A0A131XK52   W8B4Z8   A0A182PNJ0   Q5XHI8   A0A3F2Z485   A0A182SQA5   U5EVQ6   L7M5D8   A0A182XFG2   A0A131YTT0   A0A182UDZ0   A0A087UBF4   F6UJS5   A0A401SBH6   A0A3B0J7H4   F4WN08   A0A182V847   A0A3B4DCK0   A0A182I837   A0A151IWW9   U3FNL9   A0A3B4TVE9   A0A182VX29   A0A182L7Q1   Q7PSM3   H3AE06   A0A182M930   A0A182J1F0   A0A195BCV7   A0A0N8JYR2   A0A1W5AUK8   G3WRR8   C1C2G7   A0A2L2Y0Q2  

PDB

6G5I     E-value=8.13584e-46,     Score=464

KEGG

101737534    K11883 RNA-binding protein NOB1 | (RefSeq) RNA-binding protein NOB1

PATHWAY

03008    Ribosome biogenesis in eukaryotes - Bombyx mori (domestic silkworm)

GO

GO:0042274   GO:0000469   GO:0046872   GO:0004521   GO:0030490   GO:0030688   GO:0000502   GO:0007601   GO:0003924   GO:0005525   GO:0004386   GO:0005515   GO:0003677   GO:0004003   GO:0005634   GO:0006289   GO:0016286  

PANTHER

PTHR12814  

Subcellular location

Nucleus  

Length:

438

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00399

Exp number, first 60 AAs:

0.00013

Total prob of N-in:

0.00825

outside

1  -  438

 

 

Pi

13.932096

Theta

11.865345

Tajima's D

0.562044

CLR

0.64074

CSRT

0.546922653867307

Interpretation

Uncertain