Gene

KWMTBOMO12731

Pre Gene Modal

BGIBMGA007191

Annotation

PREDICTED:_TFIIH_basal_transcription_factor_complex_helicase_XPD_subunit_[Bombyx_mori]

Location

Bomo_Chr21(+):13520020-13523334      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.641 Nuclear   Reliability : 1.325

CDS

ATGTTCGGCATCCCCTACGTGTTCACGCAGAGCCGCATCCTCAAGGCACGGCTCGACTACCTGCGGGAGAACTTCCAGATTCGCGAGAACGACTTCCTGACGTTCGACGCGATGCGTCACGCCGCGCAGTGCGTCGGCCGCGCGCTCCGCGGTAAGACGGACTATGGCATCATGGTGTTCGCGGACAAGCGGTTCAGCCGCGCCGACAAGCGCAGCAAGCTGCCGCGCTGGATCCAGGAGCACTTGCGGGACTCGCTCTGCAACCTCAGCACCGAGGAGGCCGTGCAGATCTGCAAGCGTTGGCTGCGGCAGATGGCGCAACCCTTCACCCGCGAGGACCAGCTCGGCGTGTCACTGCTCACGCTGCAGCAGCTACAGTCCCAAGAGCAGCAAGACAAAATAGAGAAACAAGTCATACAGAAATAA

Protein

MFGIPYVFTQSRILKARLDYLRENFQIRENDFLTFDAMRHAAQCVGRALRGKTDYGIMVFADKRFSRADKRSKLPRWIQEHLRDSLCNLSTEEAVQICKRWLRQMAQPFTREDQLGVSLLTLQQLQSQEQQDKIEKQVIQK

Uniprot

H9JCE6   A0A194QG75   A0A2A4JX44   A0A2H1VL16   A0A3S2NL39   A0A1Y1MAI3   + More
A0A2W1BRD1   A0A1Y1MFP7   A0A212FCN4   A0A1B6KTQ9   A0A2P8YAA0   A0A1Y1MDM5   U4U951   A0A2J7PH39   N6UAL2   A0A433T9N9   A0A2J7PH41   A0A1W4WVD2   D6WI90   A0A310SJ47   A0A154P6T6   A0A2J7PH38   A0A2A3ES94   A0A151J393   A0A158N912   A0A1W4WWM3   A0A195BVS4   A0A0M8ZYN4   A0A088AL99   A0A151WNR8   A0A0J7L1L5   F4WHJ1   A0A151K0U4   A0A151IBK0   W8AKW3   A0A1B6EVK6   E2AAG2   A0A0L7QRM5   A0A067QTE7   A0A0C9QGN2   A0A232EU60   K7IS99   E2BBM2   A0A0M4ETK6   A0A2Z5U604   A0A2R7W2D0   T1I4Q7   Q6TY75   A0A026W2N3   Q6TY79   Q6TY68   A0A3B0JLM5   A0A023F3L9   B4MQM8   Q9XYZ2   B3NJP2   B3MDT0   A0A1W4UMC7   B4P9G5   Q7KVP9   B4I7L3   D3DMG9   R7U546   B4QFN4   A0A226EPU6   B5E1L9   B4H4V2   B4KNC2   A0A182HDD5   A0A1I8N808   B4LMQ6   A0A0L0BUY2   A0A0P5X268   A0A0A1X7Y6   A0A0K8VMZ9   A0A034W8P2   A0A1B6E215   A0A0P5A007   A0A0P5PSD6   A0A0P5HMJ7   A0A0P6IRH3   A0A0P5L1M6   A0A0P6EJE5   A0A0P5G6J1   A0A0P5IMP5   A0A0P5A5X7   A0A0P5YN08   A0A0P5YAY8   A0A1E1X511   L7M137   A0A131XI43   A0A1I8Q5S7   A0A0K2U3N5   A0A224YL79   A0A131YN92   A0A182PE16   T1JW17   A0A182QZS3   A0A182LWR4   E0W239  

Pubmed

19121390    26354079    28004739    28756777    22118469    29403074    + More
23537049    18362917    19820115    21347285    21719571    24495485    20798317    24845553    28648823    20075255    26760975    24508170    25474469    17994087    17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    23254933    22936249    15632085    26483478    25315136    26108605    25830018    25348373    28503490    25576852    28049606    28797301    26830274    20566863   

EMBL

BABH01031546    BABH01031547    BABH01031548    KQ458981    KPJ04492.1    NWSH01000508    + More
PCG75980.1    ODYU01002960    SOQ41122.1    RSAL01000317    RVE42598.1    GEZM01036438    GEZM01036436    GEZM01036435    JAV82704.1    KZ150005    PZC75236.1    GEZM01036434    JAV82706.1    AGBW02009156    OWR51506.1    GEBQ01025150    JAT14827.1    PYGN01000758    PSN41187.1    GEZM01036437    JAV82700.1    KB632176    ERL89592.1    NEVH01025150    PNF15642.1    APGK01042823    KB741007    KB632177    ENN75657.1    ERL89598.1    RQTK01000518    RUS78312.1    PNF15638.1    KQ971321    EFA00018.1    KQ762190    OAD56159.1    KQ434827    KZC07639.1    PNF15639.1    KZ288189    PBC34570.1    KQ980290    KYN16909.1    ADTU01009023    KQ976405    KYM91896.1    KQ435794    KOX73785.1    KQ982907    KYQ49458.1    LBMM01001332    KMQ96493.1    GL888161    EGI66345.1    KQ981229    KYN44334.1    KQ978095    KYM97017.1    GAMC01020093    GAMC01020091    JAB86462.1    GECZ01027810    JAS41959.1    GL438125    EFN69563.1    KQ414775    KOC61277.1    KK852954    KDR13283.1    GBYB01013738    GBYB01013739    JAG83505.1    JAG83506.1    NNAY01002165    OXU21893.1    GL447128    EFN86899.1    CP012524    ALC40862.1    FX985836    BBA93723.1    KK854263    PTY13893.1    ACPB03014607    AY382623    AAR20853.1    KK107459    EZA50345.1    AY382619    AY382620    AY382622    AY382625    AY382628    AAR20847.1    AAR20849.1    AAR20851.1    AAR20856.1    AAR20861.1    AY382627    AAR20860.1    OUUW01000001    SPP74409.1    GBBI01002751    JAC15961.1    CH963849    EDW74417.1    AF132140    AAD33587.1    CH954179    EDV55421.1    CH902619    EDV36465.2    CM000158    EDW91285.1    AE013599    AAM70857.2    CH480824    EDW56588.1    BT120038    ADA53577.1    AMQN01001753    KB305378    ELU01094.1    CM000362    CM002911    EDX08026.1    KMY95458.1    LNIX01000002    OXA59642.1    CM000071    EDY69521.1    CH479210    EDW32788.1    CH933808    EDW09975.2    JXUM01001650    KQ560125    KXJ84348.1    CH940648    EDW60997.1    JRES01001422    KNC23034.1    GDIP01078489    JAM25226.1    GBXI01007050    JAD07242.1    GDHF01012101    JAI40213.1    GAKP01007878    JAC51074.1    GEDC01005357    JAS31941.1    GDIP01205776    JAJ17626.1    GDIQ01124932    JAL26794.1    GDIQ01231000    JAK20725.1    GDIQ01002674    JAN92063.1    GDIQ01177501    GDIQ01071701    JAK74224.1    GDIQ01074544    JAN20193.1    GDIQ01267399    JAJ84325.1    GDIQ01212049    JAK39676.1    GDIP01203623    JAJ19779.1    GDIP01069595    JAM34120.1    GDIP01060392    LRGB01000868    JAM43323.1    KZS15446.1    GFAC01004843    JAT94345.1    GACK01008225    JAA56809.1    GEFH01002811    JAP65770.1    HACA01015191    CDW32552.1    GFPF01007252    MAA18398.1    GEDV01009001    JAP79556.1    CAEY01000807    AXCN02000281    AXCM01003940    DS235874    EEB19695.1   

Proteomes

UP000005204    UP000053268    UP000218220    UP000283053    UP000007151    UP000245037    + More
UP000030742    UP000235965    UP000019118    UP000271974    UP000192223    UP000007266    UP000076502    UP000242457    UP000078492    UP000005205    UP000078540    UP000053105    UP000005203    UP000075809    UP000036403    UP000007755    UP000078541    UP000078542    UP000000311    UP000053825    UP000027135    UP000215335    UP000002358    UP000008237    UP000092553    UP000015103    UP000053097    UP000268350    UP000007798    UP000008711    UP000007801    UP000192221    UP000002282    UP000000803    UP000001292    UP000014760    UP000000304    UP000198287    UP000001819    UP000008744    UP000009192    UP000069940    UP000249989    UP000095301    UP000008792    UP000037069    UP000076858    UP000095300    UP000075885    UP000015104    UP000075886    UP000075883    UP000009046   

PRIDE

H9JCE6    Q6TY75    Q6TY79    Q6TY68    Q9XYZ2    Q7KVP9    + More

Pfam

PF06733   DEAD_2        + More
PF06777   HBB
PF13307   Helicase_C_2

Interpro

IPR006555   ATP-dep_Helicase_C        + More
IPR013020   Rad3/Chl1-like       
IPR001945   RAD3/XPD       
IPR014013   Helic_SF1/SF2_ATP-bd_DinG/Rad3       
IPR006554   Helicase-like_DEXD_c2       
IPR010643   HBB       
IPR010614   DEAD_2       
IPR002464   DNA/RNA_helicase_DEAH_CS       
IPR027417   P-loop_NTPase       
IPR014001   Helicase_ATP-bd       

SUPFAM

SSF52540   SSF52540       

ProteinModelPortal

H9JCE6   A0A194QG75   A0A2A4JX44   A0A2H1VL16   A0A3S2NL39   A0A1Y1MAI3   + More
A0A2W1BRD1   A0A1Y1MFP7   A0A212FCN4   A0A1B6KTQ9   A0A2P8YAA0   A0A1Y1MDM5   U4U951   A0A2J7PH39   N6UAL2   A0A433T9N9   A0A2J7PH41   A0A1W4WVD2   D6WI90   A0A310SJ47   A0A154P6T6   A0A2J7PH38   A0A2A3ES94   A0A151J393   A0A158N912   A0A1W4WWM3   A0A195BVS4   A0A0M8ZYN4   A0A088AL99   A0A151WNR8   A0A0J7L1L5   F4WHJ1   A0A151K0U4   A0A151IBK0   W8AKW3   A0A1B6EVK6   E2AAG2   A0A0L7QRM5   A0A067QTE7   A0A0C9QGN2   A0A232EU60   K7IS99   E2BBM2   A0A0M4ETK6   A0A2Z5U604   A0A2R7W2D0   T1I4Q7   Q6TY75   A0A026W2N3   Q6TY79   Q6TY68   A0A3B0JLM5   A0A023F3L9   B4MQM8   Q9XYZ2   B3NJP2   B3MDT0   A0A1W4UMC7   B4P9G5   Q7KVP9   B4I7L3   D3DMG9   R7U546   B4QFN4   A0A226EPU6   B5E1L9   B4H4V2   B4KNC2   A0A182HDD5   A0A1I8N808   B4LMQ6   A0A0L0BUY2   A0A0P5X268   A0A0A1X7Y6   A0A0K8VMZ9   A0A034W8P2   A0A1B6E215   A0A0P5A007   A0A0P5PSD6   A0A0P5HMJ7   A0A0P6IRH3   A0A0P5L1M6   A0A0P6EJE5   A0A0P5G6J1   A0A0P5IMP5   A0A0P5A5X7   A0A0P5YN08   A0A0P5YAY8   A0A1E1X511   L7M137   A0A131XI43   A0A1I8Q5S7   A0A0K2U3N5   A0A224YL79   A0A131YN92   A0A182PE16   T1JW17   A0A182QZS3   A0A182LWR4   E0W239  

PDB

6O9M     E-value=2.51523e-51,     Score=504

KEGG

101742294    K10844 DNA excision repair protein ERCC-2 [EC:3.6.4.12] | (RefSeq) TFIIH basal transcription factor

PATHWAY

03022    Basal transcription factors - Bombyx mori (domestic silkworm)
03420    Nucleotide excision repair - Bombyx mori (domestic silkworm)

GO

GO:0003677   GO:0006289   GO:0005524   GO:0005634   GO:0004003   GO:0004386   GO:0006468   GO:0006366   GO:0045893   GO:0000717   GO:0045951   GO:0006979   GO:0033683   GO:0000019   GO:0009411   GO:0003684   GO:0043141   GO:0005705   GO:0051983   GO:0005700   GO:0010972   GO:0005703   GO:0001111   GO:0006974   GO:0001113   GO:0000439   GO:0006367   GO:0005737   GO:0005675   GO:0007348   GO:0007088   GO:0003676   GO:0006139   GO:0008026   GO:0016818   GO:0016286  

PANTHER

PTHR11472:SF1  

Subcellular location

Nucleus  

Length:

141

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0002

Exp number, first 60 AAs:

0.00019

Total prob of N-in:

0.06453

outside

1  -  141

 

 

Pi

13.224151

Theta

15.358922

Tajima's D

-0.373851

CLR

1.138788

CSRT

0.274936253187341

Interpretation

Uncertain