Gene

KWMTBOMO12730

Pre Gene Modal

BGIBMGA007191

Annotation

PREDICTED:_TFIIH_basal_transcription_factor_complex_helicase_XPD_subunit_isoform_X1_[Papilio_xuthus]

Location

Bomo_Chr21(+):13506160-13518884      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 1.732

CDS

ATGAAGCTAACTGTCGATGGTTTATTGGTCTATTTCCCATACGATTACATTTATCCGGAACAGTATGCTTATATGTTAGAGTTAAAACGTGCATTGGACGCTAAGGGACATGGATTGTTAGAGATGCCTTCCGGAACCGGAAAAACCATATCGCTCCTGTCTTTAATCGTAGCTTATATGATACAGAACCCTCATCATGTCAGAAAGTTAATCTACTGCTCTCGTACAGTGCCAGAAATAGAAAAAGTGTTAGAAGAACTAAAGAATTTATTCAATTATTATGAGAAATCTCAAGGAGAGAAACCGAACTTAACAGGAGTTGTTCTTAGTTCCAGGAAAAACTTATGTATTCATCCTGATGTATCAAGAGAAAGAGAAGGGAAGCTTGTAGATGGCAAATGTCATGCCCTCACAGCAAGCTATATACGAGACAGGCATGAACGTGATAGCTCTGTGCCAATTTGTCAATTTTATGAGGGCTTCAATCGTGAAGGCAAAGAGTCTATGTTACCATACGGAGTCTACACTATGGATGATATGAAACAATATGGTGCTGATAGAAATTGGTGTCCATATTTTCTTGCGAGATTTGCTATAATTCACGCTGAGATAGTGGTGTACTCATATCACTATTTGCTAGATCCAAAAATAGCAGAAGTTGTCTCGAAGGAACTGAACAGGGAGGCGGTGGTCGTGTTTGATGAGGCTCACAACATAGACAACGTGTGTATAGACTCCCTTAGTGTGAAGATCACGAGGCGGACCATAGACAAGAGCTCGCAGGCATTACAGCAACTTGAGAAGACTGTTGCAGAAATTCGTGACGAAGACGCGGCTCGTCTTACGATGGAGTACGAGCAACTGGTGGCAGGGCTGAAGGACGCCGCCATACAGAGGGAGACTGATACAATACTGGGCAACCCTATTTTACCCGATGAAGTGTTGAACGAGGTTGTACCCGGTAACATCAGGAACGCCGAGCACTTTCTCAGCTTCCTGAAGCGGTTCATCGAATATGTGAAGACCAGACTGCGCATACAGCATGTGGTGCAAGAGTCTCCTGCGGGTTTCTTAAAAGACGTATCGAGTCGGGTGTGCATAGAACGGAAGCCGCTACGATTCTGCGCATCTCGCCTCGCCTCCCTGATGAGAACGCTCCAGATACCGGATCCGTCGCACTTATCATCGCTAGTCCTGATCACGCATCTCGCGACCCTGGTCTCGACCTACACCAAGGGCTTCACGATCATAATCGAGCCCTTCGACGACAAAACGCCGAATGTTTCGAATCCTATATTGCATTTTTCATGTATGGACTCCTCAATAGCGATGCGGCCGGTCTTCGCGAGGTTCCAGACCGTCATCATCACGTCAGGAACCCTCTCGCCGCTGGACATGTACCCGAAGATCCTGGACTTCAATCCGGTGATAATGAGCTCCTTCACCATGACCCTGGCCAGGCCGTGCATACTGCCCATGATAGTATCGAAGGGCAGCGATCAGGTGGCCATATCGTCCAAGTACGAGACGAGAGAGGACGTCGCCGTCATAAGGAACTACGGGCAGCTGCTGGTCGAGATGTCGGCGTGCGTGCCTGACGGCGTGGTGTGCTTCTTCACGTCGTACCTGTATCTGGAGAGCGTCGTGGGGGCCTGGTACGACCAGGGTGTAGTCGCGAGTCTGCAGCGACACAAGCTGCTGTTCATCGAGACGCAAGACTCCGCCGAGACGAGCTTCGCCCTCATCAACTACATCAAGGCAAGTGGCGCCGCCGCCCCACCAGCGGGACCCTTACATATAGAGCATCACTAG

Protein

MKLTVDGLLVYFPYDYIYPEQYAYMLELKRALDAKGHGLLEMPSGTGKTISLLSLIVAYMIQNPHHVRKLIYCSRTVPEIEKVLEELKNLFNYYEKSQGEKPNLTGVVLSSRKNLCIHPDVSREREGKLVDGKCHALTASYIRDRHERDSSVPICQFYEGFNREGKESMLPYGVYTMDDMKQYGADRNWCPYFLARFAIIHAEIVVYSYHYLLDPKIAEVVSKELNREAVVVFDEAHNIDNVCIDSLSVKITRRTIDKSSQALQQLEKTVAEIRDEDAARLTMEYEQLVAGLKDAAIQRETDTILGNPILPDEVLNEVVPGNIRNAEHFLSFLKRFIEYVKTRLRIQHVVQESPAGFLKDVSSRVCIERKPLRFCASRLASLMRTLQIPDPSHLSSLVLITHLATLVSTYTKGFTIIIEPFDDKTPNVSNPILHFSCMDSSIAMRPVFARFQTVIITSGTLSPLDMYPKILDFNPVIMSSFTMTLARPCILPMIVSKGSDQVAISSKYETREDVAVIRNYGQLLVEMSACVPDGVVCFFTSYLYLESVVGAWYDQGVVASLQRHKLLFIETQDSAETSFALINYIKASGAAAPPAGPLHIEHH

Uniprot

A0A2A4JX44   A0A2W1BRD1   A0A2H1VL16   A0A194QG75   A0A212FCN4   A0A3S2NL39   + More
A0A1Y1MDM5   A0A1Y1MHC2   A0A0L7QRM5   A0A088AL99   A0A2A3ES94   D6WI90   A0A195BVS4   A0A0M4ETK6   A0A1W4WWM3   N6UAL2   A0A151WNR8   F4WHJ1   B4KNC2   A0A0C9QGN2   A0A1W4UMC7   A0A151IBK0   A0A151K0U4   E2AAG2   B3NJP2   A0A0L0BUY2   B4P9G5   B4J6Q4   A0A3B0JLM5   B4MQM8   B5E1L9   B4H4V2   A0A151J393   A0A2J7PH21   A0A2J7PH38   A0A2J7PH36   A0A2J7PH26   Q7KVP9   D3DMG9   A0A067QTE7   B4LMQ6   B4QFN4   A0A2J7PH37   B4I7L3   B3MDT0   A0A2Z5U604   A0A1I8N808   A0A1B6EVK6   A0A0M8ZYN4   H9JCE6   A0A0A1X7Y6   A0A0K8UIG3   A0A034W8P2   A0A0K8VMZ9   A0A1I8Q5S7   A0A1B6E215   A0A026W2N3   A0A1B0CM32   A0A182V388   A0A1Q3G257   A0A182U4Q7   A0A182LFY1   A0A182WRM9   Q7QD77   A0A182HU49   A0A1A9Y0P4   A0A1B0BNJ1   A0A182N6B5   A0A182VRF5   A0A1A9ZWC9   Q0IGE4   A0A182IS41   A0A182QZS3   K7IS99   A0A182RT65   A0A182PE16   A0A1A9V8C9   A0A182F7Z9   W5J778   A0A154P6T6   A0A232EU60   A0A1A9WIP7   A0A182LWR4   A0A182XW15   A0A336K5U7   A0A2M4BEW6   A0A182T412   A0A1B0G7Q7   A0A182K4B3   A0A158N912   U4U951   A0A1J1J477   A0A310SJ47   A0A023F3L9   Q9XYZ2   A0A1B6LG37   E2BBM2   T1I4Q7   A0A0P6ABH5   A0A0P5YAY8  

Pubmed

28756777    26354079    22118469    28004739    18362917    19820115    + More
23537049    21719571    17994087    20798317    26108605    17550304    15632085    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    24845553    22936249    26760975    25315136    19121390    25830018    25348373    24508170    20966253    12364791    14747013    17210077    17510324    20075255    20920257    23761445    28648823    25244985    21347285    25474469   

EMBL

NWSH01000508    PCG75980.1    KZ150005    PZC75236.1    ODYU01002960    SOQ41122.1    + More
KQ458981    KPJ04492.1    AGBW02009156    OWR51506.1    RSAL01000317    RVE42598.1    GEZM01036437    JAV82700.1    GEZM01036433    JAV82707.1    KQ414775    KOC61277.1    KZ288189    PBC34570.1    KQ971321    EFA00018.1    KQ976405    KYM91896.1    CP012524    ALC40862.1    APGK01042823    KB741007    KB632177    ENN75657.1    ERL89598.1    KQ982907    KYQ49458.1    GL888161    EGI66345.1    CH933808    EDW09975.2    GBYB01013738    GBYB01013739    JAG83505.1    JAG83506.1    KQ978095    KYM97017.1    KQ981229    KYN44334.1    GL438125    EFN69563.1    CH954179    EDV55421.1    JRES01001422    KNC23034.1    CM000158    EDW91285.1    CH916367    EDW00957.1    OUUW01000001    SPP74409.1    CH963849    EDW74417.1    CM000071    EDY69521.1    CH479210    EDW32788.1    KQ980290    KYN16909.1    NEVH01025150    PNF15635.1    PNF15639.1    PNF15640.1    PNF15637.1    AE013599    AAM70857.2    BT120038    ADA53577.1    KK852954    KDR13283.1    CH940648    EDW60997.1    CM000362    CM002911    EDX08026.1    KMY95458.1    PNF15641.1    CH480824    EDW56588.1    CH902619    EDV36465.2    FX985836    BBA93723.1    GECZ01027810    JAS41959.1    KQ435794    KOX73785.1    BABH01031546    BABH01031547    BABH01031548    GBXI01007050    JAD07242.1    GDHF01025986    JAI26328.1    GAKP01007878    JAC51074.1    GDHF01012101    JAI40213.1    GEDC01005357    JAS31941.1    KK107459    EZA50345.1    AJWK01018099    AJWK01018100    AJWK01018101    AJWK01018102    GFDL01001162    JAV33883.1    AAAB01008859    EAA08105.4    APCN01000606    JXJN01017417    CH477192    EAT48594.1    AXCN02000281    ADMH02002036    ETN59831.1    KQ434827    KZC07639.1    NNAY01002165    OXU21893.1    AXCM01003940    UFQS01000067    UFQT01000067    SSW98968.1    SSX19350.1    GGFJ01002431    MBW51572.1    CCAG010016890    ADTU01009023    KB632176    ERL89592.1    CVRI01000065    CRL05665.1    KQ762190    OAD56159.1    GBBI01002751    JAC15961.1    AF132140    AAD33587.1    GEBQ01017325    JAT22652.1    GL447128    EFN86899.1    ACPB03014607    GDIP01031692    JAM72023.1    GDIP01060392    LRGB01000868    JAM43323.1    KZS15446.1   

Proteomes

UP000218220    UP000053268    UP000007151    UP000283053    UP000053825    UP000005203    + More
UP000242457    UP000007266    UP000078540    UP000092553    UP000192223    UP000019118    UP000030742    UP000075809    UP000007755    UP000009192    UP000192221    UP000078542    UP000078541    UP000000311    UP000008711    UP000037069    UP000002282    UP000001070    UP000268350    UP000007798    UP000001819    UP000008744    UP000078492    UP000235965    UP000000803    UP000027135    UP000008792    UP000000304    UP000001292    UP000007801    UP000095301    UP000053105    UP000005204    UP000095300    UP000053097    UP000092461    UP000075903    UP000075902    UP000075882    UP000076407    UP000007062    UP000075840    UP000092443    UP000092460    UP000075884    UP000075920    UP000092445    UP000008820    UP000075880    UP000075886    UP000002358    UP000075900    UP000075885    UP000078200    UP000069272    UP000000673    UP000076502    UP000215335    UP000091820    UP000075883    UP000076408    UP000075901    UP000092444    UP000075881    UP000005205    UP000183832    UP000008237    UP000015103    UP000076858   

PRIDE

Q7KVP9    H9JCE6    Q9XYZ2   

Pfam

PF06777   HBB        + More
PF06733   DEAD_2
PF13307   Helicase_C_2
PF00397   WW

Interpro

IPR014013   Helic_SF1/SF2_ATP-bd_DinG/Rad3        + More
IPR027417   P-loop_NTPase       
IPR002464   DNA/RNA_helicase_DEAH_CS       
IPR006554   Helicase-like_DEXD_c2       
IPR006555   ATP-dep_Helicase_C       
IPR013020   Rad3/Chl1-like       
IPR010643   HBB       
IPR010614   DEAD_2       
IPR001945   RAD3/XPD       
IPR014001   Helicase_ATP-bd       
IPR001202   WW_dom       
IPR036020   WW_dom_sf       

SUPFAM

SSF52540   SSF52540        + More
SSF51045   SSF51045       

CDD

cd00201  WW

ProteinModelPortal

A0A2A4JX44   A0A2W1BRD1   A0A2H1VL16   A0A194QG75   A0A212FCN4   A0A3S2NL39   + More
A0A1Y1MDM5   A0A1Y1MHC2   A0A0L7QRM5   A0A088AL99   A0A2A3ES94   D6WI90   A0A195BVS4   A0A0M4ETK6   A0A1W4WWM3   N6UAL2   A0A151WNR8   F4WHJ1   B4KNC2   A0A0C9QGN2   A0A1W4UMC7   A0A151IBK0   A0A151K0U4   E2AAG2   B3NJP2   A0A0L0BUY2   B4P9G5   B4J6Q4   A0A3B0JLM5   B4MQM8   B5E1L9   B4H4V2   A0A151J393   A0A2J7PH21   A0A2J7PH38   A0A2J7PH36   A0A2J7PH26   Q7KVP9   D3DMG9   A0A067QTE7   B4LMQ6   B4QFN4   A0A2J7PH37   B4I7L3   B3MDT0   A0A2Z5U604   A0A1I8N808   A0A1B6EVK6   A0A0M8ZYN4   H9JCE6   A0A0A1X7Y6   A0A0K8UIG3   A0A034W8P2   A0A0K8VMZ9   A0A1I8Q5S7   A0A1B6E215   A0A026W2N3   A0A1B0CM32   A0A182V388   A0A1Q3G257   A0A182U4Q7   A0A182LFY1   A0A182WRM9   Q7QD77   A0A182HU49   A0A1A9Y0P4   A0A1B0BNJ1   A0A182N6B5   A0A182VRF5   A0A1A9ZWC9   Q0IGE4   A0A182IS41   A0A182QZS3   K7IS99   A0A182RT65   A0A182PE16   A0A1A9V8C9   A0A182F7Z9   W5J778   A0A154P6T6   A0A232EU60   A0A1A9WIP7   A0A182LWR4   A0A182XW15   A0A336K5U7   A0A2M4BEW6   A0A182T412   A0A1B0G7Q7   A0A182K4B3   A0A158N912   U4U951   A0A1J1J477   A0A310SJ47   A0A023F3L9   Q9XYZ2   A0A1B6LG37   E2BBM2   T1I4Q7   A0A0P6ABH5   A0A0P5YAY8  

PDB

6O9M     E-value=0,     Score=2203

KEGG

101742294    K10844 DNA excision repair protein ERCC-2 [EC:3.6.4.12] | (RefSeq) TFIIH basal transcription factor

GO

GO:0005524   GO:0006289   GO:0004003   GO:0003677   GO:0005634   GO:0004386   GO:0006468   GO:0006366   GO:0045893   GO:0000717   GO:0045951   GO:0006979   GO:0033683   GO:0000019   GO:0009411   GO:0003684   GO:0043141   GO:0000439   GO:0005703   GO:0005737   GO:0007348   GO:0005675   GO:0007088   GO:0051983   GO:0005705   GO:0010972   GO:0005700   GO:0006367   GO:0006974   GO:0001113   GO:0001111   GO:0016818   GO:0003676   GO:0008026   GO:0003707   GO:0016286  

PANTHER

PTHR11472:SF1  

Subcellular location

Nucleus  

Length:

603

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.02424

Exp number, first 60 AAs:

0.40531

Total prob of N-in:

0.01748

outside

1  -  603

 

 

Pi

18.290555

Theta

22.039107

Tajima's D

-0.941648

CLR

1.305272

CSRT

0.147642617869107

Interpretation

Uncertain