Gene

KWMTBOMO12729

Pre Gene Modal

BGIBMGA007176

Annotation

PREDICTED:_zinc_finger_protein_2_homolog_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr21(-):13493059-13505689      View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear   Reliability : 4.786

CDS

ATGTACAGTTTAAAGTTTTATCCATTGGAGACCTATTATGAAGATATCGTAGAAGTTAACCCCGAATGTTCTCCAGATCTACCACAGTGTGTATGTTATCTTTGTGCAGGATTATTGAAAAAGTATAGCAGATTTAAAAGTAAATGCTTAGTTGCACAATCCTTATTTTATAAAATACTAAAGTCTGGTAAAAAGGTCAATATTGAATCAGTAAAATCATTAGATAAACACTATTTGAAAAAATCATTGACTATTTATACTGAAACGGATGTCACACCAACAGACTTATTCCACAACGATTCTCCTACAGAATATTTGGACATTCCAGCTGATGATAATATTATTATAGAAAATGAAGACTCATTAGAAATAAATGAAACAAATTCAGAAGACTATTGCAATATTGAATACCTAAGCGATGAAGATTATAGTGACTTACAATCTCAGTTGGATTCTAAAGAACTATCGTTGGTACATTTACAAGAAGAAATTAATACCAATAGTAATCTGAGCGAAAATGACATCAAAATTGAGGCTGTATCGAGTAGAGAATTCCAATTTGTTGATACAATCGATGATATATCGTCATCACCATCAGAGAAAATTGGAGTTAAACAACCGAAGCGGATTAGTAAATCTAATATTTCTAAAACAGATTCTGAATATCCTATGGAAAAAATTAGAAGGACCACACTTGAAGTATCAGAAGATGAAATTAATCTAAACGAATGTTGTACCATACAGATTTTAAGCAAAGAAAAGCAGTTAGAAGAGATAATGAAACGGAAATATTCTAAAAACTACAAAAACTCTCCGCACAAGTGTCAGCTCTGCTACAAAGGTTTCTTGAACAACGATGCTTGGAACCATCACTTGTCCAAACATTCATCTAGCGCGGGCAGCTTGCAGTGCCCGGTGTGCAAGCTCCGGTTCAAGACCAGACAGAACCTGTACCGCCACGGGATCAACCACGAGAGGAAGTACATCTGTAAGCGGTGCAACCACGTCGCCACCACGGCTAATCAAGCGAAGATGCACCAGAGATGGCACAGAGGGATCACGTACACGTGTCACCTCTGCGGCGAAGTGTCCACGAAGTACACGTCACACCTGAGTCACGTGCGCATCAAGCACCCGTCGCAGTTCGTGTGCGGCGCGTGCGGCTCTTCCTTCGTGAGCCGCCTGGGTCTGGCCATGCACCGCGCCGTCATGCACAAGCACCGCCCCGAGGCGGCGGAAGGCGGGCCGTACTGCGCGGAGTGCGACCTGCGGTTCGCGTCGCGTGCCGCCTACTCCAAGCACCTGCTCACGTCCGTCAGGCACGTCGATGACGTCAACAACAAGTGCCGCATCTGCGACGGGTCCTTCGAGTCGAGCCAAGCGCTGCAGGACCACGTGGCGCAGTGCCGCCGCGGGCTCCCCGAGAGGCCGGCGCCGCGGCCGCGGGGGGGCCGCCCCGCCCCCGCCCCGGACCAGAGCTGGCCGATTATATGTGAACAGTGTCCGGAGCAGGTGGGCAGCGCGCGCGACTACTGGAACCACTTCCGGCGCGCGCACCCCGACCAGCCCTACCCCGCGCAGAGCAATCACGTGTGCGACGTGTGCGGCCGCGGGTTCAGGCGTAAGTCGATGTTGGTCTACCACAAGTGGAGTCACTCTGACGAACCCAAGTTCAAGTGTGAGACGTGCGGCAAGGCGTTCCAGCATCCCAACGGACTCTATTTCCACCGGAGATGGCACACCGACCTAAGGCCGTTCTCCTGTCCCGTCTGTCCCAAGGCCTTCCTGGACAAGTTTGGGCTCGAGAGGCATTTGAGGTGTCACACAGGGGAGAAGCCGTACCGCTGCCAGCTGTGCGACCGGGCGTTCAGCCAGTCCAACAGCCTCAAGGGACACATCCAGAGCGTCCACTTGAAGAAGCCCTACCCCAAGCGCGCGCGCAGGCGCCGCCCCCGCCCCGACCCCCGCGCCCCCGCCTCGCCCCCCGCCTCGCCCCCCGCCGCGACCAACAAAAAACGGCTCAGTCGATGA

Protein

MYSLKFYPLETYYEDIVEVNPECSPDLPQCVCYLCAGLLKKYSRFKSKCLVAQSLFYKILKSGKKVNIESVKSLDKHYLKKSLTIYTETDVTPTDLFHNDSPTEYLDIPADDNIIIENEDSLEINETNSEDYCNIEYLSDEDYSDLQSQLDSKELSLVHLQEEINTNSNLSENDIKIEAVSSREFQFVDTIDDISSSPSEKIGVKQPKRISKSNISKTDSEYPMEKIRRTTLEVSEDEINLNECCTIQILSKEKQLEEIMKRKYSKNYKNSPHKCQLCYKGFLNNDAWNHHLSKHSSSAGSLQCPVCKLRFKTRQNLYRHGINHERKYICKRCNHVATTANQAKMHQRWHRGITYTCHLCGEVSTKYTSHLSHVRIKHPSQFVCGACGSSFVSRLGLAMHRAVMHKHRPEAAEGGPYCAECDLRFASRAAYSKHLLTSVRHVDDVNNKCRICDGSFESSQALQDHVAQCRRGLPERPAPRPRGGRPAPAPDQSWPIICEQCPEQVGSARDYWNHFRRAHPDQPYPAQSNHVCDVCGRGFRRKSMLVYHKWSHSDEPKFKCETCGKAFQHPNGLYFHRRWHTDLRPFSCPVCPKAFLDKFGLERHLRCHTGEKPYRCQLCDRAFSQSNSLKGHIQSVHLKKPYPKRARRRRPRPDPRAPASPPASPPAATNKKRLSR

Uniprot

A0A2A4JVY9   A0A194QHT0   A0A437BE19   A0A2A4JVX9   A0A2A4JW96   A0A0N1PFS3   + More
A0A2A4JSJ1   A0A437BB57   A0A437BB58   A0A2A4JMX7   H9IWW1   A0A194Q527   A0A194Q632   A0A2A4JTI5   A0A2A4K8P9   A0A2W1BE97   A0A212F5H6   A0A0N1IE84   A0A2H1WS93   A0A2H1WDF0   H9IWV3   A0A2H1V264   A0A3S2P4F7   A0A2A4K5S6   A0A437AWX8   A0A2A4K4E2   A0A2W1BCB5   A0A2W1BWP0   A0A3S2NNE3   A0A2W1BJE6   A0A2H1WD86   A0A2A4K524   A0A437AWP2   A0A139WA24   A0A1E1W0D9   A0A437BK49  

Pubmed

26354079    19121390    28756777    22118469    18362917    19820115    + More

EMBL

NWSH01000508    PCG75979.1    KQ458981    KPJ04495.1    RSAL01000080    RVE48654.1    + More
PCG75969.1    PCG75968.1    KQ460882    KPJ11499.1    NWSH01000652    PCG75007.1    RSAL01000098    RVE47650.1    RVE47649.1    NWSH01000946    PCG73425.1    BABH01021020    BABH01021021    BABH01021022    BABH01021023    KQ459463    KPJ00464.1    KPJ00465.1    PCG75008.1    NWSH01000027    PCG80587.1    KZ150164    PZC72671.1    AGBW02010195    OWR48987.1    KQ458725    KPJ05381.1    ODYU01010673    SOQ55945.1    ODYU01007811    SOQ50892.1    BABH01020992    BABH01020993    ODYU01000342    SOQ34930.1    RSAL01000025    RVE52099.1    NWSH01000141    PCG79123.1    RSAL01000313    RVE42651.1    PCG79125.1    KZ150504    PZC70656.1    KZ149937    PZC77096.1    RVE52097.1    KZ150257    PZC71783.1    ODYU01007868    SOQ51021.1    PCG79126.1    RSAL01000318    RVE42575.1    KQ971689    KYB24764.1    GDQN01010599    JAT80455.1    RSAL01000042    RVE50776.1   

Proteomes

UP000218220    UP000053268    UP000283053    UP000053240    UP000005204    UP000007151    + More
UP000007266   

PRIDE

H9IWW1    H9IWV3   

Pfam

PF00096   zf-C2H2        + More
PF07776   zf-AD
PF05485   THAP

Interpro

IPR013087   Znf_C2H2_type        + More
IPR036236   Znf_C2H2_sf       
IPR012934   Znf_AD       
IPR038441   THAP_Znf_sf       
IPR006612   THAP_Znf       

SUPFAM

SSF57667   SSF57667       

Gene 3D

3.30.40.180    

ProteinModelPortal

A0A2A4JVY9   A0A194QHT0   A0A437BE19   A0A2A4JVX9   A0A2A4JW96   A0A0N1PFS3   + More
A0A2A4JSJ1   A0A437BB57   A0A437BB58   A0A2A4JMX7   H9IWW1   A0A194Q527   A0A194Q632   A0A2A4JTI5   A0A2A4K8P9   A0A2W1BE97   A0A212F5H6   A0A0N1IE84   A0A2H1WS93   A0A2H1WDF0   H9IWV3   A0A2H1V264   A0A3S2P4F7   A0A2A4K5S6   A0A437AWX8   A0A2A4K4E2   A0A2W1BCB5   A0A2W1BWP0   A0A3S2NNE3   A0A2W1BJE6   A0A2H1WD86   A0A2A4K524   A0A437AWP2   A0A139WA24   A0A1E1W0D9   A0A437BK49  

PDB

5V3M     E-value=3.06468e-24,     Score=279

KEGG

101742150    no KO assigned | (RefSeq) zinc finger protein 2 homolog

GO

GO:0003676   GO:0008270   GO:0005634   GO:0003677   GO:0046872   GO:0046416   GO:0016020   GO:0009156   GO:0044249   GO:0004879   GO:0003707   GO:0016286  

Length:

676

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0085

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00013

outside

1  -  676

 

 

Pi

18.07317

Theta

17.608949

Tajima's D

0.254262

CLR

0.622317

CSRT

0.449127543622819

Interpretation

Uncertain