Gene

KWMTBOMO12713  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA014402

Annotation

PREDICTED:_survival_motor_neuron_protein_[Papilio_polytes]

Location

Bomo_Chr21(-):12730877-12739691      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 4.659

CDS

ATGTCTAAAAGCGAAATTTTGTACGTTAGGGGAATGAATATATCTGAAACTGAAGAAGAAGAAGAGGAAGATGTGTGGGACGACAAGAAATTGAATGATGCGTACGACAAAGCACTGAAAATGGCAAACGCTGAAGTCGCAAAGAGAGTAGCAATGTCTACTAATACAGAGCATGGTAACAAAGGTAAACTCAAAGGCAAATCCCGCCCTACGTCTTCAAATAAGAAAGAAACTGAATGGAAAGCTGGCATGCCTTGTCGGGCCGTTTATGAAGGGGATGGACTTGAATATGAAGCTTTTATCTTGAGGGTCATAAGTGATACTGAATGTGTTGTGAGATTTTTAGGTTATGAAAATTCAGAGTTAGTGCCATTAAACGCGCTAAAACCAAGTCTGGGAAATGAGGAGAGGACCCGTCAAATAGAAGAAGCGCTGCAGGATAATGGTGACGATGGCTTTGGAAGTCAGTCTCCGGATCTTGATCGAATGCAGTTTGGAAGTGACAGGGGTGTACACAGTCCAGAGAGTACAGATAGATCTACTCCAAGAAAACCAACGAAGAAGAAGAAATCCGTGAAAAAATGTAGGAACATTGGATTTGAATTACCAGAAATACCGATGCCTAACATGGCAGCGTTGAGAAACCTGGGCGGGATGGAGATGCCCATCCCTCCTCCGCCCCCGATGAACTTCACAAGCGACAACACGGACTCGGAACAGCAAGCGATCTCCTCGATGCTCCTGAGCTGGTACATGAGCGGCTACTACACCGGCCTCTACCAGGGAATGAAAAGGTCGAAGGAAAATAACAAAAACGTGTAA

Protein

MSKSEILYVRGMNISETEEEEEEDVWDDKKLNDAYDKALKMANAEVAKRVAMSTNTEHGNKGKLKGKSRPTSSNKKETEWKAGMPCRAVYEGDGLEYEAFILRVISDTECVVRFLGYENSELVPLNALKPSLGNEERTRQIEEALQDNGDDGFGSQSPDLDRMQFGSDRGVHSPESTDRSTPRKPTKKKKSVKKCRNIGFELPEIPMPNMAALRNLGGMEMPIPPPPPMNFTSDNTDSEQQAISSMLLSWYMSGYYTGLYQGMKRSKENNKNV

Uniprot

H9JXY4   A0A0N1IIM6   A0A3S2P8Z4   A0A2A4JVI2   S4P3K8   A0A2H1V716   + More
A0A1E1WAD3   A0A1E1WD77   A0A212ERG4   A0A026WVT6   A0A067QIK5   A0A310SDJ2   A0A336N3A3   A0A2A3EKR6   E2C4Z8   A0A088A467   A0A1B0DLY7   F4WXK1   E9GUA8   A0A069DR79   A0A2R5LKB2   A0A224XN17   A0A1L8DH06   A0A0M9A5P2   R7TZS0   A0A0P4VQK8   R4FL69   A0A0L0BL49   A0A0J7L2S3   A0A1Z5KYD6   A0A0A9XKM8   A0A232EP79   K7J458   L7MJ51   A0A023F7F8   A0A1L8EBH4   A0A1L8EBS9   A0A1L8EBL0   A0A2R5LIK0   B4LB39   A0A131YS06   A0A2J7RJS3   L7M292   A0A1L8DHA3   A0A131XDM3   A0A1L8EAG1   G3MLI0   A0A131YVA8   A0A293LQ98   A0A293M376   B0WP58   U5EUW2   A0A224Z0C9   A0A0P4WI21   V5HXJ8   A0A131Y7Z8   T1I3B8   A0A023GJP0   A0A224Z2C1   Q16Y09   K1RDL1   A0A1A9X0A8   A0A023G633   A0A0A1XI90   A0A0C9R1E5   T1PHT2   A0A1I8NG22   G3MGK3   B3M4G9   A0A132A9K5   A0A2T7NGH2   L7MGN8   A0A131XD08   A0A210QDX2   A0A154NXV2   A0A0P6DMR4   A0A0L7R607   B4PKD2   A0A1S3GXK8   B3NHY5   A0A1W4UFP1  

Pubmed

19121390    26354079    23622113    22118469    24508170    30249741    + More
24845553    20798317    21719571    21292972    26334808    23254933    27129103    26108605    28528879    25401762    26823975    28648823    20075255    25576852    25474469    17994087    26830274    28049606    22216098    28797301    25765539    17510324    22992520    25830018    26131772    25315136    26555130    28812685    17550304   

EMBL

BABH01041169    KQ459762    KPJ20120.1    RSAL01000186    RVE44795.1    NWSH01000587    + More
PCG75483.1    GAIX01006399    JAA86161.1    ODYU01001012    SOQ36640.1    GDQN01007149    JAT83905.1    GDQN01006121    JAT84933.1    AGBW02013021    OWR44088.1    KK107079    QOIP01000010    EZA60117.1    RLU17782.1    KK853510    KDR07072.1    KQ762962    OAD55177.1    UFQT01000617    UFQT01003889    SSX25813.1    SSX35347.1    KZ288219    PBC32300.1    GL452712    EFN76979.1    AJVK01073309    GL888425    EGI61071.1    GL732565    EFX77006.1    GBGD01002732    JAC86157.1    GGLE01005742    MBY09868.1    GFTR01003942    JAW12484.1    GFDF01008460    JAV05624.1    KQ435728    KOX77745.1    AMQN01011300    KB308820    ELT96430.1    GDKW01002466    JAI54129.1    GAHY01002214    JAA75296.1    JRES01001702    KNC20791.1    LBMM01001016    KMQ97067.1    GFJQ02007159    JAV99810.1    GBHO01023408    GBRD01008950    GDHC01018076    JAG20196.1    JAG56871.1    JAQ00553.1    NNAY01002980    OXU20189.1    AAZX01007148    GACK01001835    JAA63199.1    GBBI01001539    JAC17173.1    GFDG01002785    JAV16014.1    GFDG01002786    JAV16013.1    GFDG01002787    JAV16012.1    GGLE01005142    MBY09268.1    CH940647    EDW68603.1    GEDV01007876    JAP80681.1    NEVH01002988    PNF41093.1    GACK01007786    JAA57248.1    GFDF01008293    JAV05791.1    GEFH01003268    JAP65313.1    GFDG01003078    JAV15721.1    JO842731    AEO34348.1    GEDV01006716    JAP81841.1    GFWV01004280    MAA29010.1    GFWV01010465    MAA35194.1    DS232020    EDS32103.1    GANO01002152    JAB57719.1    GFPF01012170    MAA23316.1    GDRN01049533    JAI66545.1    GANP01005195    JAB79273.1    GEFM01000447    JAP75349.1    ACPB03021650    GBBM01002468    JAC32950.1    GFPF01012169    MAA23315.1    CH477528    EAT39494.1    JH818267    EKC39390.1    GBBM01006154    JAC29264.1    GBXI01003657    JAD10635.1    GBZX01001935    JAG90805.1    KA648244    AFP62873.1    JO841004    AEO32621.1    CH902618    EDV40463.1    JXLN01011788    KPM07676.1    PZQS01000013    PVD20256.1    GACK01001904    JAA63130.1    GEFH01003732    JAP64849.1    NEDP02004063    OWF46950.1    KQ434772    KZC03858.1    GDIQ01089960    JAN04777.1    KQ414648    KOC66305.1    CM000159    EDW94830.1    CH954178    EDV52071.1   

Proteomes

UP000005204    UP000053240    UP000283053    UP000218220    UP000007151    UP000053097    + More
UP000279307    UP000027135    UP000242457    UP000008237    UP000005203    UP000092462    UP000007755    UP000000305    UP000053105    UP000014760    UP000037069    UP000036403    UP000215335    UP000002358    UP000008792    UP000235965    UP000002320    UP000015103    UP000008820    UP000005408    UP000091820    UP000095301    UP000007801    UP000245119    UP000242188    UP000076502    UP000053825    UP000002282    UP000085678    UP000008711    UP000192221   

PRIDE

H9JXY4   

Pfam

PF06003   SMN        + More
PF00567   TUDOR

Interpro

IPR002999   Tudor        + More
IPR010304   Survival_motor_neuron       

ProteinModelPortal

H9JXY4   A0A0N1IIM6   A0A3S2P8Z4   A0A2A4JVI2   S4P3K8   A0A2H1V716   + More
A0A1E1WAD3   A0A1E1WD77   A0A212ERG4   A0A026WVT6   A0A067QIK5   A0A310SDJ2   A0A336N3A3   A0A2A3EKR6   E2C4Z8   A0A088A467   A0A1B0DLY7   F4WXK1   E9GUA8   A0A069DR79   A0A2R5LKB2   A0A224XN17   A0A1L8DH06   A0A0M9A5P2   R7TZS0   A0A0P4VQK8   R4FL69   A0A0L0BL49   A0A0J7L2S3   A0A1Z5KYD6   A0A0A9XKM8   A0A232EP79   K7J458   L7MJ51   A0A023F7F8   A0A1L8EBH4   A0A1L8EBS9   A0A1L8EBL0   A0A2R5LIK0   B4LB39   A0A131YS06   A0A2J7RJS3   L7M292   A0A1L8DHA3   A0A131XDM3   A0A1L8EAG1   G3MLI0   A0A131YVA8   A0A293LQ98   A0A293M376   B0WP58   U5EUW2   A0A224Z0C9   A0A0P4WI21   V5HXJ8   A0A131Y7Z8   T1I3B8   A0A023GJP0   A0A224Z2C1   Q16Y09   K1RDL1   A0A1A9X0A8   A0A023G633   A0A0A1XI90   A0A0C9R1E5   T1PHT2   A0A1I8NG22   G3MGK3   B3M4G9   A0A132A9K5   A0A2T7NGH2   L7MGN8   A0A131XD08   A0A210QDX2   A0A154NXV2   A0A0P6DMR4   A0A0L7R607   B4PKD2   A0A1S3GXK8   B3NHY5   A0A1W4UFP1  

PDB

4V98     E-value=1.78951e-06,     Score=122

KEGG

101743786    K13129 survival motor neuron protein | (RefSeq) survival motor neuron protein

PATHWAY

03013    RNA transport - Bombyx mori (domestic silkworm)

GO

GO:0006397   GO:0003723   GO:0005634   GO:0005737   GO:0002164   GO:0005886   GO:0007417   GO:0051393   GO:0000387   GO:0097113   GO:1990194   GO:0060079   GO:0042802   GO:0031594   GO:0072089   GO:0008345   GO:0017145   GO:0030240   GO:0034730   GO:0045175   GO:0033962   GO:0035154   GO:0072553   GO:0009792   GO:0098794   GO:0015030   GO:0034718   GO:0032797   GO:0051276   GO:0007274   GO:0071254   GO:0048601   GO:0030018   GO:0007528   GO:0048863   GO:0097504   GO:0032224   GO:0016021   GO:0009156   GO:0044249   GO:0003677   GO:0004879   GO:0003707   GO:0016286  

Length:

273

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.65984

Exp number, first 60 AAs:

0

Total prob of N-in:

0.06447

outside

1  -  273

 

 

Pi

3.06037

Theta

5.99708

Tajima's D

-1.699468

CLR

300.405042

CSRT

0.0337983100844958

Interpretation

Possibly Positive selection