Gene

KWMTBOMO12702

Pre Gene Modal

BGIBMGA001598

Annotation

PREDICTED:_hemicentin-1-like_[Bombyx_mori]

Location

Bomo_Chr21(+):12208587-12224062      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 1.014 Nuclear   Reliability : 1.393

CDS

ATGGTAGTGCAAGTTCCACCAGATATCATCAGTGATGATGCATCAGGCGATGTCTCAGTGCAGGAGTTGGAGAATGCCACATTGACCTGCAAGGCGACAGGTCATCCCCCACCCAAAATAACGTGGAGAAGGGAAGACCACGAACCTATTCTGCTTAAGAAACCCATGTCGAGGGATTTTGACAAAGTTGAGAACTACGTGGGTAGTTCTTTACCTTTGTGGCGCGTGGATCGACGTCAGATGGGCGCTTTCCTCTGCATAGCTTCAAACGACGTGCCTCCAGCGGTCAGCAAGAGGATCACACTGCTAGTCAACTTCGCGCCTACCGTAAAAGTGCCAAACCAGTTATTAGGTGCACCACTAGGCACTGACGTCAAACTCAAGTGCTACGTGGAGGCCTATCCTAATACAATCAATTATTGGATCAAGAACAGGGGAGAAATGCTCTTAGATGGGCCTAAATACACCATAAGAGAAGAGAAGGCGTCCTACAAAGTATCCATGTGGCTGACAATTAGACAGTTCTCTAGGAATGACATCGGGACGTACAACTGTGTCAGCACGAATTCTCTCGGCAAAAGCGAAGGGACTCTTAGATTGTATGAAATAAAACTGAACTCGTACCAGGAGGACTTCAATCAAATCAGCGTTGCCGGAGGTCTAACGGAAGCAGCTAAAGGAGATACATCCAACTTCCTCCATTCAAACAGGATATTTTTGTGCACGTTATGTTTGTTCGCGTATTTATACATGTTTACGTAG

Protein

MVVQVPPDIISDDASGDVSVQELENATLTCKATGHPPPKITWRREDHEPILLKKPMSRDFDKVENYVGSSLPLWRVDRRQMGAFLCIASNDVPPAVSKRITLLVNFAPTVKVPNQLLGAPLGTDVKLKCYVEAYPNTINYWIKNRGEMLLDGPKYTIREEKASYKVSMWLTIRQFSRNDIGTYNCVSTNSLGKSEGTLRLYEIKLNSYQEDFNQISVAGGLTEAAKGDTSNFLHSNRIFLCTLCLFAYLYMFT

Uniprot

H9IWG6   A0A3S2NUD5   A0A2A4K566   A0A194QC96   A0A194RDC2   A0A437B3S3   + More
A0A139WN83   N6T454   U4UDP3   E1ZV74   A0A151WUH7   A0A139WNB8   A0A195CCJ1   D6WCY9   A0A158N9A5   A0A0L7RHX4   A0A026W6C5   E2BP10   A0A3L8DTW3   N6ULD4   A0A1J1J3M1   A0A067RKA0   A0A1B0GIU2   A0A336ML53   A0A1A9XQ95   A0A1B0B834   A0A1A9Z6V7   A0A0A1X2R8   A0A1W4VVW5   A0A336N405   A0A1I8PK55   A0A1B0GE93   W8AMF9   A0A453YJK6   Q7QBC5   A0A1I8MV17   A0A182USC5   A0A2C9H8C1   A0A1J1J0K1   A0A2S2PC71   J9JYG8   A0A1A9UMF1   E0VYZ0   B4KDU1   A0A1B6DBF6   A0A1I8PK30   A0A1W4XLM5   A0A2H8TU39   B4JTC2   Q9VAR6   B4QYV4   B4HZ33   B4M062   B4G4W2   B3P5N5   Q298Y7   B4PQM8   A0A1A9X1V2   A0A3B0K1B9   B3LXP5   B4N9K3   A0A1B6KXD0   Q17P54   A0A154P4K6   A0A182IP77   A0A182LCJ9   A0A0P8Y1B6   A0A0L0CNQ0   A0A0C9QQM6   D6WCY6   A0A0M3QX94   A0A212F862   A0A3S2NFW5   A0A2H8TWC3   A0A1B6L2P2   A0A2S2P3R2   A0NFK2   A0A1S4GAQ9   A0A182JAS4   E0VAF5   H9J1R2   A0A182W618   A0A1J1I9R8   A0A084VV20   A0A212F5B1   T1IV88   A0A0M4ETJ3   A0A182VVF9   B4NPW7   A0A1I8Q817   A0A0C9RVC6  

Pubmed

19121390    26354079    18362917    19820115    23537049    20798317    + More
21347285    24508170    30249741    24845553    25830018    24495485    12364791    14747013    17210077    25315136    20566863    17994087    18057021    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    30688651    15632085    17550304    17510324    20966253    26108605    22118469    24438588   

EMBL

BABH01006618    RSAL01000186    RVE44806.1    NWSH01000118    PCG79381.1    KQ459193    + More
KPJ03087.1    KQ460325    KPJ15838.1    RVE44805.1    KQ971311    KYB29489.1    APGK01044470    APGK01044471    APGK01044472    APGK01044473    APGK01044474    KB741026    ENN74934.1    KB632309    ERL92094.1    GL434441    EFN74933.1    KQ982730    KYQ51496.1    KYB29490.1    KQ977935    KYM98574.1    EEZ99078.1    ADTU01009130    ADTU01009131    ADTU01009132    ADTU01009133    ADTU01009134    ADTU01009135    ADTU01009136    ADTU01009137    ADTU01009138    KQ414589    KOC70419.1    KK107373    EZA51637.1    GL449511    EFN82602.1    QOIP01000004    RLU23834.1    APGK01019171    APGK01019172    KB740092    KB632310    ENN81486.1    ERL92109.1    CVRI01000064    CRL05481.1    KK852460    KDR23453.1    AJWK01017657    UFQT01001460    SSX30660.1    JXJN01009819    GBXI01009247    JAD05045.1    UFQT01002324    SSX33218.1    CCAG010012177    CCAG010012178    GAMC01020882    GAMC01020879    JAB85673.1    APCN01002137    APCN01002138    APCN01002139    APCN01002140    APCN01002141    APCN01002142    AAAB01008879    EAA08340.4    CRL05482.1    GGMR01014375    MBY26994.1    ABLF02039711    ABLF02039721    ABLF02039724    ABLF02039727    ABLF02039728    ABLF02039730    ABLF02047045    DS235848    EEB18596.1    CH933806    EDW14938.2    KRG01288.1    KRG01289.1    GEDC01014275    GEDC01008700    JAS23023.1    JAS28598.1    GFXV01005968    MBW17773.1    CH916373    EDV95012.1    AE014297    AY060653    AAF56835.1    AAL28201.1    CM000364    EDX14773.1    CH480819    EDW53290.1    CH940650    EDW68312.2    CH479179    EDW24628.1    CH954182    EDV53285.1    CM000070    EAL27817.2    CM000160    EDW98367.1    OUUW01000013    SPP88067.1    CH902617    EDV43939.1    CH964232    EDW81679.1    GEBQ01023864    JAT16113.1    CH477194    EAT48443.1    KQ434818    KZC06875.1    KPU80550.1    JRES01000236    KNC33079.1    GBYB01006024    JAG75791.1    EEZ99076.2    CP012526    ALC45533.1    AGBW02009782    OWR49926.1    RSAL01000128    RVE46511.1    GFXV01006037    MBW17842.1    GEBQ01022000    JAT17977.1    GGMR01011502    MBY24121.1    AAAB01008973    EAU76204.3    DS235006    EEB10361.1    BABH01008159    CVRI01000044    CRK96482.1    ATLV01017146    KE525157    KFB41814.1    AGBW02010215    OWR48920.1    JH431578    CP012528    ALC48222.1    CH964291    EDW86192.2    GBYB01012835    JAG82602.1   

Proteomes

UP000005204    UP000283053    UP000218220    UP000053268    UP000053240    UP000007266    + More
UP000019118    UP000030742    UP000000311    UP000075809    UP000078542    UP000005205    UP000053825    UP000053097    UP000008237    UP000279307    UP000183832    UP000027135    UP000092461    UP000092443    UP000092460    UP000092445    UP000192221    UP000095300    UP000092444    UP000075840    UP000007062    UP000095301    UP000075903    UP000076407    UP000007819    UP000078200    UP000009046    UP000009192    UP000192223    UP000001070    UP000000803    UP000000304    UP000001292    UP000008792    UP000008744    UP000008711    UP000001819    UP000002282    UP000091820    UP000268350    UP000007801    UP000007798    UP000008820    UP000076502    UP000075880    UP000075882    UP000037069    UP000092553    UP000007151    UP000075920    UP000030765   

PRIDE

H9IWG6    Q9VAR6    H9J1R2   

Pfam

PF07679   I-set        + More
PF00047   ig
PF07686   V-set

Interpro

IPR003599   Ig_sub        + More
IPR007110   Ig-like_dom       
IPR013783   Ig-like_fold       
IPR013098   Ig_I-set       
IPR003598   Ig_sub2       
IPR036179   Ig-like_dom_sf       
IPR013106   Ig_V-set       
IPR013151   Immunoglobulin       

SUPFAM

SSF48726   SSF48726       

Gene 3D

2.60.40.10    

ProteinModelPortal

H9IWG6   A0A3S2NUD5   A0A2A4K566   A0A194QC96   A0A194RDC2   A0A437B3S3   + More
A0A139WN83   N6T454   U4UDP3   E1ZV74   A0A151WUH7   A0A139WNB8   A0A195CCJ1   D6WCY9   A0A158N9A5   A0A0L7RHX4   A0A026W6C5   E2BP10   A0A3L8DTW3   N6ULD4   A0A1J1J3M1   A0A067RKA0   A0A1B0GIU2   A0A336ML53   A0A1A9XQ95   A0A1B0B834   A0A1A9Z6V7   A0A0A1X2R8   A0A1W4VVW5   A0A336N405   A0A1I8PK55   A0A1B0GE93   W8AMF9   A0A453YJK6   Q7QBC5   A0A1I8MV17   A0A182USC5   A0A2C9H8C1   A0A1J1J0K1   A0A2S2PC71   J9JYG8   A0A1A9UMF1   E0VYZ0   B4KDU1   A0A1B6DBF6   A0A1I8PK30   A0A1W4XLM5   A0A2H8TU39   B4JTC2   Q9VAR6   B4QYV4   B4HZ33   B4M062   B4G4W2   B3P5N5   Q298Y7   B4PQM8   A0A1A9X1V2   A0A3B0K1B9   B3LXP5   B4N9K3   A0A1B6KXD0   Q17P54   A0A154P4K6   A0A182IP77   A0A182LCJ9   A0A0P8Y1B6   A0A0L0CNQ0   A0A0C9QQM6   D6WCY6   A0A0M3QX94   A0A212F862   A0A3S2NFW5   A0A2H8TWC3   A0A1B6L2P2   A0A2S2P3R2   A0NFK2   A0A1S4GAQ9   A0A182JAS4   E0VAF5   H9J1R2   A0A182W618   A0A1J1I9R8   A0A084VV20   A0A212F5B1   T1IV88   A0A0M4ETJ3   A0A182VVF9   B4NPW7   A0A1I8Q817   A0A0C9RVC6  

PDB

6EFY     E-value=8.62474e-57,     Score=555

KEGG

101746439    no KO assigned | (RefSeq) hemicentin-1-like

GO

GO:0016021   GO:0007529   GO:0032589   GO:1904396   GO:0072499   GO:0050808   GO:0005887   GO:0005515   GO:0043401   GO:0003700   GO:0005634   GO:0008270   GO:0043565   GO:0003677   GO:0004879   GO:0003707   GO:0016286  

Length:

253

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

7.23621

Exp number, first 60 AAs:

0

Total prob of N-in:

0.19001

outside

1  -  253

 

 

Pi

21.409496

Theta

15.615084

Tajima's D

-1.877655

CLR

13.915124

CSRT

0.0206489675516224

Interpretation

Uncertain