Gene

KWMTBOMO12701

Annotation

endonuclease-reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr21(-):12192684-12195726      View in EpiBrowser

Full name

Integrin beta       + More
Sodium/hydrogen exchanger      

Location in the cell

Mitochondrial   Reliability : 2.185 Nuclear   Reliability : 1.536

CDS

ATGCAACGGCCCCCAGTACCCGGCAGCTCTACTATTCCTGGCCACGGTGGCGGTCACGGTAACGGTAGGGCAGGGGGTGCGAAGAATCCCCGGTCGGCAGGCCACCATAAACAACTGACCATTGGCACGTTTAACACCCGGACTTTGAGGCGAGATGAGGATGTGGAAGAGCTGGAAGTAGAATTGAGGTCCATTAAATGGCATATCCTTGGGCTTTCGGAGGTCCGTAGAGAGGGTGAGGACACCGTCATCCTCGAGTCTGGAAACCTCTTCTACTACCGTAAAGGAGACCAGCTCTCTCAAGGCGGTGTTGGGTTCATCGTTCACAAAGCCATCGCTAACAACGTCTTGGAGCTATCGAGTGTGTCGTCGCGGGTGGTGTACATTATAGTTAAAATCTCAGAGAGATATTTACTCAAGGTCGTGCAAGTGTATGCACCAACGGCGACACACCCTGATTGTGAGGTTGAGGCCTTATATGAAGACATCTTTAAGGCCATTCATAACACCACCAAGACCCACTTCACCGTTGTAGTTGGCGACTTCAACGCCAAAGTGGGAATACAAGGGGAAGACGAATCCATAATTGGACGGTATGGTTTGGGGACGAGAAACCACAGAGGACAAATGCTTGTTAATTTTCTGCAGATGGAGGGACTCTATTTGATGAACTCGTTTTTCAAAAAGAAGCCCCAAAGGAGATGGACTTGGCAAAGTGCCGACAAAGTGACACGGAACGAGATCGATTTCATCATGGCGGATAAGAAGCGAATATTTACGGATGTCTCAGTGGTCAACAGGTTTAGTGCCGGTAGTGACCACCGACTTATTCGAGGAACCCTAAATATCGACATAAGGCTTGAAAGAACCCGGTTGATGAGATCGACTCTGCGCCCGTCTCTTCCCCAAATCATCCAAGTTTCCGAGAAGTTCCAATTGGAACTTCAAAATCGATTCAGTCTGCTGGATCCCACTGAGGACGTGAACGACGTGGTGGAGAACATGGCGGCGACACTACGTGAAGTTGGCGGAAGATACTTTGGATCACAGCGGAGAGTTCGTGAAGCCAAGCTAACCCCTGAGACTCTGGCATTAATGAGGAAACGACGAGAAGCCACTCCATCCACAAGAGCTACAGCAGAGTACGCAACCTTAAATAAGGACGTCCGGAGGATGGTGAGGCGTGACTACCGTAACTTTAATGCTAAACGCATTGAAGCTGCGATAGAGCGCAATAAAGGCCTTAAAGCCCTTGTACGGACGTCTAAAAGTGCTCCTCTGCTTAAGCTTAAGCGAGAAGATGGTTCTATAGTTACTTCCAAGCCAGAAATCTTAGGCGAGGTCGAAAAATATTATGGCAAACTCTACGCAATGCACACTTCTCTACCTACACCCGCCAACCGAGCTAGTGACAGCCGAGCACCGCTTACTCGGCATTACTCGGATGATGTCCCGGACATCAGCATCGGGGAGATTCGGATGGCCCTGGAACAGCTCAAAAATGGTAGAGCGCCTGGTGAAGATGGAATTACTACGGAGCTGCTGAAATCCGGAGGGGTTCCTATCCTGAAGGAATTACGGAGCCTGTACAATTCCGTCATACACAATGGGAATACACCATTGGCGTGGACAAGGAGTCGGGTCATGTTGTTCTTCAAGAAAGGTGATAAAACTTTGTTGAAGAACTATAGACCGATATCTCTTTTGAGCCACGTCTACAAGGTCTTTTCTAGGGTCATTACTAATCGTCTCGCCCGAAGGCTTGATGAATGCCAGCCACCGGAGCAGGCTGGGTTTCGAAAGGGTTACAATACCGTAGACCATATTCACACCCTCAGACAGATTATAGAAAAGTCTACAGAATATAATCTGCCACTTTGCGTGGCTTTCGTGGACTACGAGAAAGCCTTTGACTCTATCGAGACCTGGTCAGTTCTGGAATCCTTACAGCGATGCCAGATAGACTATCGCTATATCGAGGTGTTGAAAAGTCTATACGAAGCCGCGACGATGACCGTACAAATCCAGGATTGCCAGTCTAGACCTATCAAGCTGCAGCGGGGTGTCCGACAGGGAGATATTACATCTCCGAAACTGTTCACCGCTGCACTTGAAGATGTCTTCAAGACGCTGGACTGGAAAACATGTGGAATCAACGTCAACGGAGAGTACATGTCACACCTTCGATTTGTCGATGACATAGTCTTAATGTCGGAATCGCTGGAGGACCTCAGTCGTATGCTCAACGATCTCAATGCTGCTTCCCGATGCGTGGGACTGCGGATGAACCTTGACAAGACGAAAGTCATGTTCAATGATAAAATCGTCCCGGGCCAAGTTACCATCTCGAATGCAGTCATTGAAGAGGTAAAAGACTTTGTCTACCTCGGTCAGGCTATCCAGCTTGGCCGGGGTAACTTCAATACAGAGATTGAGAAACGCATACGACTGGGTTGGTCGGCATTTGGGAAATTCCGTGCAATCCTCACCTCGCAAATTCCTCAATGCCTGAAGACAAAAGTCTTTAACCAGTGCATTCTCCCCGCTATGACCTACGGCGCGGAAACCTGGACACTGACGGCAGGGCTGGCCCATAAGTTAAGAGTCGCACAGCGGGCGATGGAGAGAGCTATGCTAGGTATTTCTCTAAGGGACAAAATCCGGAACGAAGAAATTCGACAGAGAACCAAAGTCGACGACATAGCTCTCAAAGCTAGCAGGCTGAAGTGGCAATGGGCCGGACACATCATTTCAATCAATCAAGTCAGCGGTAGTACAGGAAACCGAAACCGGTTTAGTGGTGCTTAA

Protein

MQRPPVPGSSTIPGHGGGHGNGRAGGAKNPRSAGHHKQLTIGTFNTRTLRRDEDVEELEVELRSIKWHILGLSEVRREGEDTVILESGNLFYYRKGDQLSQGGVGFIVHKAIANNVLELSSVSSRVVYIIVKISERYLLKVVQVYAPTATHPDCEVEALYEDIFKAIHNTTKTHFTVVVGDFNAKVGIQGEDESIIGRYGLGTRNHRGQMLVNFLQMEGLYLMNSFFKKKPQRRWTWQSADKVTRNEIDFIMADKKRIFTDVSVVNRFSAGSDHRLIRGTLNIDIRLERTRLMRSTLRPSLPQIIQVSEKFQLELQNRFSLLDPTEDVNDVVENMAATLREVGGRYFGSQRRVREAKLTPETLALMRKRREATPSTRATAEYATLNKDVRRMVRRDYRNFNAKRIEAAIERNKGLKALVRTSKSAPLLKLKREDGSIVTSKPEILGEVEKYYGKLYAMHTSLPTPANRASDSRAPLTRHYSDDVPDISIGEIRMALEQLKNGRAPGEDGITTELLKSGGVPILKELRSLYNSVIHNGNTPLAWTRSRVMLFFKKGDKTLLKNYRPISLLSHVYKVFSRVITNRLARRLDECQPPEQAGFRKGYNTVDHIHTLRQIIEKSTEYNLPLCVAFVDYEKAFDSIETWSVLESLQRCQIDYRYIEVLKSLYEAATMTVQIQDCQSRPIKLQRGVRQGDITSPKLFTAALEDVFKTLDWKTCGINVNGEYMSHLRFVDDIVLMSESLEDLSRMLNDLNAASRCVGLRMNLDKTKVMFNDKIVPGQVTISNAVIEEVKDFVYLGQAIQLGRGNFNTEIEKRIRLGWSAFGKFRAILTSQIPQCLKTKVFNQCILPAMTYGAETWTLTAGLAHKLRVAQRAMERAMLGISLRDKIRNEEIRQRTKVDDIALKASRLKWQWAGHIISINQVSGSTGNRNRFSGA

Similarity

Belongs to the integrin beta chain family.
Belongs to the monovalent cation:proton antiporter 1 (CPA1) transporter (TC 2.A.36) family.

Feature

chain  Integrin beta

Uniprot

D7F160   D7F157   D7F165   D7F166   D7F164   D7F159   + More
D7F158   A0A437BHD1   A0A437B0R4   A0A3S2N805   A0A2H1VS24   A0A2W1BZV1   A0A1S3HCU5   A0A0K0FAW8   A0A0N5C0B1   A0A016S1D2   A0A016SG46   A0A016TK11   A0A016W4R1   D7F176   A0A016WPY4   A0A016V419   A0A016WCB8   A0A016ULU9   A0A023EXV2   D7F179   D7F177   A0A016V4Q8   D7F178   A0A016V9Q8   A0A016T7J7   A0A023EWU8   A0A0P4VWD0   A0A016WA79   A0A016S795   A0A016S5B2   A0A016VVN3   A0A016SVA2   A0A016U3L3   A0A016U352   A0A016U784   A0A016VEC1   A0A016T590   A0A016VCD9   A0A016SW37   A0A016THC6   A0A016T9D3   A0A016T9A5   E3NC15   A0A016WE57   A0A016S403   A0A016VCU3   A0A016V6A2   A0A016VBP7   E3MH09   A0A2W5U8K4   A0A2H1WF27   A0A016UN79   A0A2H2JFN0   A0A016T8K0   A0A069DZM5   A0A016RUR3   A0A016WEQ1   A0A016U420   A0A016RV73   A0A016SPR9   A0A016U4G3   K7IG35   K7IG36   K7ICT1   A0A016UY78   K7ICT2   A0A016VGA0   A0A016SLV8   K7I2A3   A0A016RRX8   A0A016VT25   K7I2A1   K7I2A2   A0A016T4C4   A0A016RY50   A0A016SY13   A0A016U6B7   A0A016WYN9   A0A016WUN2   A0A016W1X2   A0A016X207   A0A016V007   A0A016SCL7   A0A016VLP0   A0A069DX96  

Pubmed

20470440    28756777    25730766    25474469    27129103    26334808    + More

EMBL

FJ265545    ADI61813.1    FJ265542    ADI61810.1    FJ265550    ADI61818.1    + More
FJ265551    ADI61819.1    FJ265549    ADI61817.1    FJ265544    ADI61812.1    FJ265543    ADI61811.1    RSAL01000057    RVE49824.1    RSAL01000220    RVE44071.1    RSAL01001818    RVE40675.1    ODYU01004088    SOQ43598.1    KZ149907    PZC78256.1    JARK01001655    EYB84321.1    JARK01001565    EYB89683.1    JARK01001676    JARK01001446    JARK01001433    EYB83199.1    EYC01126.1    EYC02928.1    JARK01001337    EYC34625.1    FJ265561    ADI61829.1    JARK01000173    EYC41342.1    JARK01001354    EYC21986.1    JARK01000388    EYC37469.1    JARK01001370    EYC16150.1    GBBI01004876    JAC13836.1    FJ265564    ADI61832.1    FJ265562    ADI61830.1    EYC21713.1    FJ265563    ADI61831.1    JARK01001351    EYC23458.1    JARK01001736    JARK01001462    JARK01001379    JARK01001338    EYB80775.1    EYB98943.1    EYC13646.1    EYC33347.1    GBBI01004877    JAC13835.1    GDKW01001596    JAI54999.1    JARK01000460    EYC36749.1    JARK01001621    EYB86109.1    JARK01001626    EYB85833.1    JARK01001340    EYC30828.1    JARK01001505    EYB94618.1    JARK01001395    EYC09730.1    EYC09729.1    JARK01001389    EYC11015.1    JARK01001348    EYC25048.1    JARK01001473    EYB97806.1    EYC25050.1    EYB94617.1    JARK01001438    EYC02111.1    JARK01001459    EYB99276.1    EYB99275.1    DS268591    EFO92565.1    JARK01000343    EYC38099.1    JARK01001639    EYB85201.1    EYC25046.1    JARK01001353    EYC22263.1    EYC25049.1    DS268444    EFP01729.1    QFQQ01000179    PZR20596.1    ODYU01008249    SOQ51673.1    EYC16376.1    EYB98944.1    GBGD01000380    JAC88509.1    JARK01001711    EYB81734.1    JARK01000347    EYC38051.1    EYC09726.1    JARK01001700    JARK01001393    EYB82228.1    EYC10181.1    JARK01001531    EYB92324.1    EYC09727.1    JARK01001359    EYC20105.1    JARK01001346    EYC26445.1    JARK01001543    EYB91356.1    JARK01001730    EYB81048.1    EYC30744.1    JARK01001475    EYB97550.1    JARK01001683    EYB82909.1    JARK01001497    EYB95322.1    EYC10874.1    JARK01000063    EYC44387.1    JARK01000109    EYC42952.1    EYC33297.1    JARK01000008    EYC46079.1    JARK01001357    EYC20551.1    JARK01001628    JARK01001583    JARK01001528    JARK01001506    JARK01001470    JARK01001467    JARK01001463    JARK01001457    JARK01001432    JARK01001420    JARK01001403    JARK01001371    JARK01001369    JARK01001360    JARK01001349    JARK01000603    JARK01000080    EYB85741.1    EYB88438.1    EYB92544.1    EYB94540.1    EYB98080.1    EYB98468.1    EYB98899.1    EYB99568.1    EYC03088.1    EYC05014.1    EYC08153.1    EYC15852.1    EYC16408.1    EYC19456.1    EYC22445.1    EYC24734.1    EYC24778.1    EYC24866.1    EYC33488.1    EYC35672.1    EYC43798.1    JARK01001344    EYC28216.1    GBGD01000453    JAC88436.1   

Proteomes

UP000283053    UP000085678    UP000035680    UP000046392    UP000024635    UP000008281    + More
UP000005237   

PRIDE

D7F160    D7F157    D7F165    D7F166    D7F164    D7F159    + More
D7F158    D7F176    D7F179    D7F177    D7F178   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF00362   Integrin_beta
PF13520   AA_permease_2
PF10328   7TM_GPCR_Srx
PF00999   Na_H_Exchanger
PF03372   Exo_endo_phos

Interpro

IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR032695   Integrin_dom_sf       
IPR036465   vWFA_dom_sf       
IPR015812   Integrin_bsu       
IPR002035   VWF_A       
IPR002369   Integrin_bsu_VWA       
IPR020846   MFS_dom       
IPR002293   AA/rel_permease1       
IPR016186   C-type_lectin-like/link_sf       
IPR016187   CTDL_fold       
IPR001507   ZP_dom       
IPR029052   Metallo-depent_PP-like       
IPR019430   7TM_GPCR_serpentine_rcpt_Srx       
IPR017452   GPCR_Rhodpsn_7TM       
IPR018422   Cation/H_exchanger_CPA1       
IPR006153   Cation/H_exchanger       
IPR004709   NaH_exchanger       
IPR004835   Chitin_synth       
IPR029044   Nucleotide-diphossugar_trans       

SUPFAM

SSF56219   SSF56219        + More
SSF53300   SSF53300       
SSF69179   SSF69179       
SSF56436   SSF56436       
SSF53448   SSF53448       

Gene 3D

3.60.10.10     3.40.50.410     3.10.100.10     3.60.21.10     3.90.550.10    

CDD

cd06174  MFS

ProteinModelPortal

D7F160   D7F157   D7F165   D7F166   D7F164   D7F159   + More
D7F158   A0A437BHD1   A0A437B0R4   A0A3S2N805   A0A2H1VS24   A0A2W1BZV1   A0A1S3HCU5   A0A0K0FAW8   A0A0N5C0B1   A0A016S1D2   A0A016SG46   A0A016TK11   A0A016W4R1   D7F176   A0A016WPY4   A0A016V419   A0A016WCB8   A0A016ULU9   A0A023EXV2   D7F179   D7F177   A0A016V4Q8   D7F178   A0A016V9Q8   A0A016T7J7   A0A023EWU8   A0A0P4VWD0   A0A016WA79   A0A016S795   A0A016S5B2   A0A016VVN3   A0A016SVA2   A0A016U3L3   A0A016U352   A0A016U784   A0A016VEC1   A0A016T590   A0A016VCD9   A0A016SW37   A0A016THC6   A0A016T9D3   A0A016T9A5   E3NC15   A0A016WE57   A0A016S403   A0A016VCU3   A0A016V6A2   A0A016VBP7   E3MH09   A0A2W5U8K4   A0A2H1WF27   A0A016UN79   A0A2H2JFN0   A0A016T8K0   A0A069DZM5   A0A016RUR3   A0A016WEQ1   A0A016U420   A0A016RV73   A0A016SPR9   A0A016U4G3   K7IG35   K7IG36   K7ICT1   A0A016UY78   K7ICT2   A0A016VGA0   A0A016SLV8   K7I2A3   A0A016RRX8   A0A016VT25   K7I2A1   K7I2A2   A0A016T4C4   A0A016RY50   A0A016SY13   A0A016U6B7   A0A016WYN9   A0A016WUN2   A0A016W1X2   A0A016X207   A0A016V007   A0A016SCL7   A0A016VLP0   A0A069DX96  

KEGG

101746439    no KO assigned | (RefSeq) hemicentin-1-like

GO

GO:0003964   GO:0004519   GO:0016021   GO:0016758   GO:0006885   GO:0015385  

PANTHER

PTHR10082   PTHR10110   PTHR22914  

Subcellular location

Membrane  

Length:

935

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.05716

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00011

outside

1  -  935

 

 

Pi

6.652401

Theta

19.041412

Tajima's D

-1.690795

CLR

214.883343

CSRT

0.0356482175891205

Interpretation

Uncertain