Gene
KWMTBOMO12699
Annotation
PREDICTED:_limbic_system-associated_membrane_protein-like_[Amyelois_transitella]
Full name
DNA-directed RNA polymerase subunit
Location in the cell
Mitochondrial Reliability : 1.287 Nuclear Reliability : 1.837
Sequence
CDS
ATGACTACAAAGAAGTTTTCCGAAGAGCCAGAATTCGAGCGGCCAATTGGGAATCACACGTTTTTCCTTGGACGAGAAGCAGTTTTGGGTTGCGCTGTCACTAATCTTGGAAAACATAAGGGACAACAGTCAGCAACCGTGAGGCCCGCCACCGGCCCCATGCCGCGGCCCCACCTCTACAAACCAGAGGAGGAGCCGCGGCACTAG
Protein
MTTKKFSEEPEFERPIGNHTFFLGREAVLGCAVTNLGKHKGQQSATVRPATGPMPRPHLYKPEEEPRH
Summary
Description
DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
Catalytic Activity
a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate + RNA(n+1)
Similarity
Belongs to the RNA polymerase beta' chain family.
Uniprot
EC Number
2.7.7.6
EMBL
Proteomes
Pfam
Interpro
IPR003598
Ig_sub2
+ More
IPR006592 RNA_pol_N
IPR007083 RNA_pol_Rpb1_4
IPR036179 Ig-like_dom_sf
IPR042102 RNA_pol_Rpb1_3_sf
IPR015699 DNA-dir_RNA_pol1_lsu
IPR007110 Ig-like_dom
IPR003599 Ig_sub
IPR007080 RNA_pol_Rpb1_1
IPR007081 RNA_pol_Rpb1_5
IPR007066 RNA_pol_Rpb1_3
IPR013783 Ig-like_fold
IPR000722 RNA_pol_asu
IPR013098 Ig_I-set
IPR038120 Rpb1_funnel_sf
IPR006592 RNA_pol_N
IPR007083 RNA_pol_Rpb1_4
IPR036179 Ig-like_dom_sf
IPR042102 RNA_pol_Rpb1_3_sf
IPR015699 DNA-dir_RNA_pol1_lsu
IPR007110 Ig-like_dom
IPR003599 Ig_sub
IPR007080 RNA_pol_Rpb1_1
IPR007081 RNA_pol_Rpb1_5
IPR007066 RNA_pol_Rpb1_3
IPR013783 Ig-like_fold
IPR000722 RNA_pol_asu
IPR013098 Ig_I-set
IPR038120 Rpb1_funnel_sf
SUPFAM
SSF48726
SSF48726
Gene 3D
ProteinModelPortal
PDB
6NS1
E-value=0.00380152,
Score=88
Ontologies
PANTHER
Topology
Length:
68
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.09134
Exp number, first 60 AAs:
0.09134
Total prob of N-in:
0.36962
outside
1 - 68
Population Genetic Test Statistics
Pi
15.33006
Theta
14.123001
Tajima's D
-0.906122
CLR
1.02539
CSRT
0.155892205389731
Interpretation
Uncertain
