Silkworm Genome Informatics Database

Gene

KWMTBOMO12689

Pre Gene Modal

BGIBMGA001391

Annotation

PREDICTED:_steroid_receptor_seven-up?_isoform_A-like?_partial_[Plutella_xylostella]

Location

Bomo_Chr21(-):11719994-11784322 View in EpiBrowser

Transcription factor

RXR-like

Location in the cell

Nuclear Reliability : 3.762

CDS

ATGTATTCACTAATTCTTGATAAAGATCGTCTTAAAGTCCATAAAACATCTCGTAATAATTCAACACGTAAATATGTTGCGCGTCGCGCGTCTTCTCGCCCCGTGACCGCAACCGGCATCATCACGCACGGAGCGCTAGTTTACGGCGGGGTCGGAGGCCCGGGGCTTTGCCCTCCGAGAGGCCCTGACCACCCGCCCCTCGAACTCGGCTTTCGCGGTAGTTGGAGGGAAGATGAGCATTTGCCTTCGACTCCCGCGAGTCAGGCCGCGTCGACGCAGAGCGGTTCCTCCGCGACGGATAAAGGCCAGAATGTGGAGTGCGTGGTCTGCGGTGACAAGTCCTCCGGGAAACACTACGGCCAGTTCACTTGTGAGGGCTGCAAATCGTTTTTCAAGAGATCCGTCCGGAGAAACCTGACGTATTCGTGCAGAGGAAACAGGAGCTGCCCCATTGACCAGCACCATAGAAACCAGTGTCAGTTCTGCAGACTAAGGAAATGTCTCAAAATGGGCATGAGAAGAGAAGCTGTCCAAAGAGGTCGAGTGCCTCCATCGCAGCCGCCCGGCCTGGGACTCCCTGGCCAGTTCACCCTAGGCAACGGTGACCCCGGCGCCGGACTCAACAATCATCCATATCTCTCGTCGTACATATCGCTGCTACTGCGGGCGGAGCCCTACCCCGCCTCGAGATACAGTCCATGCGTCCAACCAACGAACGTCATGGGCATAGACAACATCTGCGAGCTCGCTGCCAGACTGCTTTTCTCCGCCGTCGAATGGGCGAGAAACATCCCCTTCTTCCCCGAACTGCAAGTTACGGACCAAGTCGCCTTACTGAGGCTCGTCTGGTCGGAACTGTTCGTGTTAAACGCCTCTCAGTGCTCCATGCCCCTCCACGTGGCCCCCTTACTGGCCGCCGCGGGACTGCACGCGTCCCCCATGGCGGCCGACCGAGTGGTCGCCTTCATGGACCACATCCGCATCTTCCAAGAGCAGGTGGAGAAGCTGAAGGCGCTCCACGTGGACTCCGCGGAGTACTCCTGTCTGAAGGCGATCGTCCTCTTCACGACAGGTAAAATTTTGGATAGCCTTTTCGGGGAAGCGCGGTTGTTGCTTTACAGGGTGGCGGGCGCTGGGGTCGCGGTGACCAACTACACGGAGCTTATCACGTTGGTACGCACGCACCTAGACGTGTATACTGACGCGACACGAGTACCGCAGACGCCGGCGCCGCCCCCACCCTCCGCGGCCTCGTCCGGGTACTATTCCTCTCTGGACGCATCGCTCGGCGTCAACTCCTCACTGTCTTACGGCAGTTTCCTATCGACTCCTTCCCGACTGCCTTCTAATTATACGAGCAGCCCTCGCGTCCCGGAAGCGAGTACGTCGTCACCATTTAAGCCTTGGGATTGTAAAGTGCCGAAGACAGACCAGGGGGGTTGA

Protein

MYSLILDKDRLKVHKTSRNNSTRKYVARRASSRPVTATGIITHGALVYGGVGGPGLCPPRGPDHPPLELGFRGSWREDEHLPSTPASQAASTQSGSSATDKGQNVECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGNRSCPIDQHHRNQCQFCRLRKCLKMGMRREAVQRGRVPPSQPPGLGLPGQFTLGNGDPGAGLNNHPYLSSYISLLLRAEPYPASRYSPCVQPTNVMGIDNICELAARLLFSAVEWARNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKILDSLFGEARLLLYRVAGAGVAVTNYTELITLVRTHLDVYTDATRVPQTPAPPPPSAASSGYYSSLDASLGVNSSLSYGSFLSTPSRLPSNYTSSPRVPEASTSSPFKPWDCKVPKTDQGG

Similarity

Belongs to the nuclear hormone receptor family.

Uniprot

A0A3S2LHZ0

EMBL

RSAL01000006 RVE54243.1

Proteomes

UP000283053

Pfam

PF00105 zf-C4 + More
PF00104 Hormone_recep

Interpro

IPR013088   Znf_NHR/GATA        + More
IPR000536   Nucl_hrmn_rcpt_lig-bd
IPR001628   Znf_hrmn_rcpt
IPR035500   NHR-like_dom_sf
IPR001723   Nuclear_hrmn_rcpt

SUPFAM

SSF48508 SSF48508

Gene 3D

1.10.565.10 3.30.50.10

ProteinModelPortal

A0A3S2LHZ0

PDB

3CJW E-value=4.74019e-76, Score=725

KEGG

692505 K14032 nuclear receptor subfamily 2 group F member 3 | (RefSeq) steroid receptor seven-up, isoforms

GO

GO:0046872 GO:0005634 GO:0003677 GO:0006355 GO:0043401 GO:0003700 GO:0008270 GO:0043565 GO:0004879 GO:0003707 GO:0016286

Subcellular location

Nucleus

Length:

480

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

3.07683

Exp number, first 60 AAs:

2.6478

Total prob of N-in:

0.12483

outside

1 - 480

Pi

24.034395

Theta

21.581487

Tajima's D

0.09686

CLR

1.124228

CSRT

0.410529473526324

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics