Gene

KWMTBOMO12682  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA001593

Annotation

NADH_dehydrogenase_(ubiquinone)_1_alpha_subcomplex?_13_[Bombyx_mori]

Location

Bomo_Chr21(+):11484283-11486693      View in EpiBrowser

Full name

Tetraspanin      

Location in the cell

Mitochondrial   Reliability : 2.395

CDS

ATGGCTGAAGCTTTTCAGGTGGCTAAAAAACAAGATTTGCCCCCTCCGGGGGGCTACAAGCCAATTCCATTTAAAAGGATCCCCGCTAAATCTTATTTCAGCGGATATACTATGTTTGCGGGGTTCATTGGAATGACAATTGGTTCTATATATCTCTATAACATAACTTACAAGAGAATTCTTAAGGATGAGATTGAGATGAGATCCGCTAAAATGGCGATATACCCTGCTCTACTGGCAGAAAGAGATAGGGAATACCTAAAGCAGCTCCGTAGGAACAGGGATGCTGAGGCAGAGCTGATGCGAGACGTTCCCGGGTGGGAGGTCGGTACTTACTACGGAGAACGCGTCTACAAACTTATTCCCCCCGACCAGTTGGTCGAACCAATCTTCCAAGAGTACTATGCACACAGTGACATCAAAGAGTGGAACAAACGTGCTAACATCAAGCTTCTTTCATAA

Protein

MAEAFQVAKKQDLPPPGGYKPIPFKRIPAKSYFSGYTMFAGFIGMTIGSIYLYNITYKRILKDEIEMRSAKMAIYPALLAERDREYLKQLRRNRDAEAELMRDVPGWEVGTYYGERVYKLIPPDQLVEPIFQEYYAHSDIKEWNKRANIKLLS

Similarity

Belongs to the tetraspanin (TM4SF) family.

Uniprot

H9IWG1   Q2F619   A0A194RDA7   A0A194QI25   A0A3S2TSV2   S4PE34   + More
A0A1E1WET0   F6K7D6   A0A2A4JPG5   A0A212F799   A0A0L7LFZ7   A0A2H1VDX6   B4JNZ0   B3MXY3   A0A0M4F9J2   W8CD05   A0A182RGQ5   B4L2G8   B4MSK9   A0A034WSG1   A0A0K8VPW8   A0A182MHG7   B4M7X6   A0A182NAX6   B4H2K0   A0A3B0J6Q7   Q29II9   A0A182Y8B1   A0A3Q7YJD4   A0A1W4VSE5   A0A2M4ADV2   B4NU29   B4I0B5   B3NXR9   A0A182WZD7   A0A182UQH9   A0A182L670   A0A182U0U1   A0A182ICT0   A0A182JNR4   A0A182PKV4   Q7Q1S2   Q9W402   A0A3Q7YJ70   A0A3Q7YJ95   Q6XHS6   A0A0L0BQL2   T1DNI6   A0A2M3ZGI3   W5J3C0   A0A182F4D1   B4PYS0   T1PF79   A0A2M4C2Q1   A0A1L8EF53   A0A084VWC2   A0A1B0DHE8   A0A0K8TR63   A0A1I8PY64   A0A336MTR1   A0A182VTW8   D6WAR0   A0A1L8EEU7   A0A2P8XBG2   A0A1B6E8A5   A0A182J2U6   U5EGY7   A0A1A9XLM9   V5I9I8   A0A1Y1NI59   A0A1A9VUD7   A0A1A9ZED1   A0A1W4WWH2   A0A023EH04   Q179C9   A0A1A9W301   A0A1L8E181   A0A1Q3FKX2   A0A1L8E0S9   A0A1B6GM73   A0A1J1IQI0   B0W1E7   A0A1B6HBG0   A0A1B0GB42   A0A0P4W606   A0A1B6L6Q6   I4DJG3   A0A0T6AT68   A0A067RBS9   A0A1B0CY68   A0A0U3YCU4   A0A0V0G4Q5   R4FLV9   A0A0P4VQ94   A0A224XVM8   N6TXF8   A0A2R7X8X6   A0A0K8THU9   A0A146KMU9   A0A146L0Y0  

Pubmed

19121390    26354079    23622113    22118469    26227816    17994087    + More
18057021    24495485    25348373    15632085    23185243    25244985    20966253    12364791    14747013    17210077    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    14525923    26108605    20920257    23761445    17550304    25315136    24438588    26369729    18362917    19820115    29403074    28004739    24945155    26483478    17510324    22651552    24845553    27129103    23537049    26823975   

EMBL

BABH01006541    DQ311253    ABD36198.1    KQ460325    KPJ15823.1    KQ459193    + More
KPJ03101.1    RSAL01000006    RVE54247.1    GAIX01003351    JAA89209.1    GDQN01005542    JAT85512.1    HM369463    ADM64320.1    NWSH01000885    PCG73708.1    PCG73709.1    AGBW02009897    OWR49614.1    JTDY01001347    KOB74126.1    ODYU01002009    SOQ38976.1    CH916371    EDV92433.1    CH902630    EDV38598.1    KPU77481.1    CP012528    ALC49225.1    GAMC01002788    GAMC01002786    JAC03770.1    CH933810    EDW06844.1    CH963851    EDW75098.1    KRF98196.1    GAKP01001705    GAKP01001703    JAC57247.1    GDHF01011383    JAI40931.1    AXCM01001829    CH940653    EDW62893.1    CH479204    EDW30567.1    OUUW01000003    SPP77717.1    CH379063    EAL32664.1    KRT06228.1    GQ315666    ADF66348.1    GGFK01005561    MBW38882.1    CH983576    EDX16476.1    CH480819    EDW52946.1    CH954180    EDV47370.1    APCN01005756    AAAB01008980    EAA13833.1    AE014298    AY071078    AAF46158.1    AAL48700.1    AHN59414.1    ALI51144.1    GQ315665    GQ315667    GQ315668    GQ315669    GQ315670    GQ315671    GQ315672    GQ315673    GQ315674    GQ315675    GQ315676    GQ315677    GQ315678    GQ315679    ADF66347.1    ADF66349.1    ADF66350.1    ADF66351.1    ADF66352.1    ADF66353.1    ADF66354.1    ADF66355.1    ADF66356.1    ADF66357.1    ADF66358.1    ADF66359.1    ADF66360.1    ADF66361.1    GQ315649    GQ315650    GQ315651    GQ315652    GQ315653    GQ315654    GQ315655    GQ315656    GQ315657    GQ315658    GQ315659    GQ315660    GQ315661    GQ315662    GQ315663    GQ315664    ADF66331.1    ADF66332.1    ADF66333.1    ADF66334.1    ADF66335.1    ADF66336.1    ADF66337.1    ADF66338.1    ADF66339.1    ADF66340.1    ADF66341.1    ADF66342.1    ADF66343.1    ADF66344.1    ADF66345.1    ADF66346.1    AY232107    GQ315634    GQ315635    GQ315636    GQ315637    GQ315638    GQ315639    GQ315640    GQ315641    GQ315642    GQ315643    GQ315644    GQ315645    GQ315646    GQ315647    GQ315648    AAR10130.1    ADF66316.1    ADF66317.1    ADF66318.1    ADF66319.1    ADF66320.1    ADF66321.1    ADF66322.1    ADF66323.1    ADF66324.1    ADF66325.1    ADF66326.1    ADF66327.1    ADF66328.1    ADF66329.1    ADF66330.1    JRES01001612    KNC21509.1    GAMD01002840    JAA98750.1    GGFM01006905    MBW27656.1    ADMH02002138    GGFL01004972    ETN58336.1    MBW69150.1    CM000162    EDX01006.2    KA647344    AFP61973.1    GGFJ01010300    MBW59441.1    GFDG01001580    JAV17219.1    ATLV01017552    KE525174    KFB42266.1    AJVK01061020    GDAI01000734    JAI16869.1    UFQT01001748    SSX31647.1    KQ971312    EEZ99191.1    GFDG01001579    JAV17220.1    PYGN01004286    PSN29341.1    GEDC01003130    JAS34168.1    GANO01003245    JAB56626.1    GALX01002860    JAB65606.1    GEZM01002484    JAV97228.1    JXUM01106288    GAPW01005489    KQ565042    JAC08109.1    KXJ71416.1    CH477355    CH477347    EAT42790.1    EAT42791.1    EAT42966.1    GFDF01001829    JAV12255.1    GFDL01006785    JAV28260.1    GFDF01001828    JAV12256.1    GECZ01015645    GECZ01006230    JAS54124.1    JAS63539.1    CVRI01000054    CRL00761.1    DS231821    EDS45017.1    GECU01035706    JAS72000.1    CCAG010006535    GDRN01069479    JAI64035.1    GEBQ01020574    JAT19403.1    AK401431    BAM18053.1    LJIG01022859    KRT78352.1    KK852805    KDR16119.1    AJWK01035505    AJWK01035506    KU365859    ALX72357.1    GECL01003099    JAP03025.1    ACPB03003576    GAHY01001233    JAA76277.1    GDKW01001958    JAI54637.1    GFTR01002528    JAW13898.1    APGK01010162    APGK01010922    KB738342    KB738132    KB632363    ENN82650.1    ENN82763.1    ERL93536.1    KK861888    PTY28228.1    GBRD01000835    JAG64986.1    GDHC01021574    JAP97054.1    GDHC01017224    JAQ01405.1   

Proteomes

UP000005204    UP000053240    UP000053268    UP000283053    UP000218220    UP000007151    + More
UP000037510    UP000001070    UP000007801    UP000092553    UP000075900    UP000009192    UP000007798    UP000075883    UP000008792    UP000075884    UP000008744    UP000268350    UP000001819    UP000076408    UP000192221    UP000000304    UP000001292    UP000008711    UP000076407    UP000075903    UP000075882    UP000075902    UP000075840    UP000075881    UP000075885    UP000007062    UP000000803    UP000037069    UP000000673    UP000069272    UP000002282    UP000095301    UP000030765    UP000092462    UP000095300    UP000075920    UP000007266    UP000245037    UP000075880    UP000092443    UP000078200    UP000092445    UP000192223    UP000069940    UP000249989    UP000008820    UP000091820    UP000183832    UP000002320    UP000092444    UP000027135    UP000092461    UP000015103    UP000019118    UP000030742   

PRIDE

H9IWG1    Q2F619    Q9W402   

Pfam

PF06212   GRIM-19        + More
PF00335   Tetraspanin
PF02136   NTF2
PF03943   TAP_C
PF09162   Tap-RNA_bind
PF00474   SSF

Interpro

IPR009346   GRIM-19        + More
IPR008952   Tetraspanin_EC2_sf       
IPR000301   Tetraspanin       
IPR018499   Tetraspanin/Peripherin       
IPR035979   RBD_domain_sf       
IPR001611   Leu-rich_rpt       
IPR018222   Nuclear_transport_factor_2_euk       
IPR009060   UBA-like_sf       
IPR032675   LRR_dom_sf       
IPR032710   NTF2-like_dom_sf       
IPR002075   NTF2       
IPR038377   Na/Glc_symporter_sf       
IPR012677   Nucleotide-bd_a/b_plait_sf       
IPR001734   Na/solute_symporter       
IPR015245   Tap_RNA-bd       
IPR018212   Na/solute_symporter_CS       
IPR005637   TAP_C_dom       

SUPFAM

SSF48652   SSF48652        + More
SSF54928   SSF54928       
SSF46934   SSF46934       
SSF54427   SSF54427       

Gene 3D

1.10.1450.10     1.20.1730.10     3.30.70.330     3.80.10.10    

CDD

cd14342  UBA_TAP-C
cd00780  NTF2

ProteinModelPortal

H9IWG1   Q2F619   A0A194RDA7   A0A194QI25   A0A3S2TSV2   S4PE34   + More
A0A1E1WET0   F6K7D6   A0A2A4JPG5   A0A212F799   A0A0L7LFZ7   A0A2H1VDX6   B4JNZ0   B3MXY3   A0A0M4F9J2   W8CD05   A0A182RGQ5   B4L2G8   B4MSK9   A0A034WSG1   A0A0K8VPW8   A0A182MHG7   B4M7X6   A0A182NAX6   B4H2K0   A0A3B0J6Q7   Q29II9   A0A182Y8B1   A0A3Q7YJD4   A0A1W4VSE5   A0A2M4ADV2   B4NU29   B4I0B5   B3NXR9   A0A182WZD7   A0A182UQH9   A0A182L670   A0A182U0U1   A0A182ICT0   A0A182JNR4   A0A182PKV4   Q7Q1S2   Q9W402   A0A3Q7YJ70   A0A3Q7YJ95   Q6XHS6   A0A0L0BQL2   T1DNI6   A0A2M3ZGI3   W5J3C0   A0A182F4D1   B4PYS0   T1PF79   A0A2M4C2Q1   A0A1L8EF53   A0A084VWC2   A0A1B0DHE8   A0A0K8TR63   A0A1I8PY64   A0A336MTR1   A0A182VTW8   D6WAR0   A0A1L8EEU7   A0A2P8XBG2   A0A1B6E8A5   A0A182J2U6   U5EGY7   A0A1A9XLM9   V5I9I8   A0A1Y1NI59   A0A1A9VUD7   A0A1A9ZED1   A0A1W4WWH2   A0A023EH04   Q179C9   A0A1A9W301   A0A1L8E181   A0A1Q3FKX2   A0A1L8E0S9   A0A1B6GM73   A0A1J1IQI0   B0W1E7   A0A1B6HBG0   A0A1B0GB42   A0A0P4W606   A0A1B6L6Q6   I4DJG3   A0A0T6AT68   A0A067RBS9   A0A1B0CY68   A0A0U3YCU4   A0A0V0G4Q5   R4FLV9   A0A0P4VQ94   A0A224XVM8   N6TXF8   A0A2R7X8X6   A0A0K8THU9   A0A146KMU9   A0A146L0Y0  

PDB

5LNK     E-value=2.28952e-16,     Score=203

KEGG

692866    K11353 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 13 | (RefSeq) Ndufa13; NADH dehydr

PATHWAY

00190    Oxidative phosphorylation - Bombyx mori (domestic silkworm)
01100    Metabolic pathways - Bombyx mori (domestic silkworm)

GO

GO:0016021   GO:0008137   GO:0005747   GO:0006120   GO:0022857   GO:0005634   GO:0005737   GO:0006406   GO:0003723  

PANTHER

PTHR12966  

Subcellular location

Membrane  

Length:

153

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

22.26072

Exp number, first 60 AAs:

22.2552

Total prob of N-in:

0.22550

POSSIBLE N-term signal

sequence

outside

1  -  32

TMhelix

33  -  55

inside

56  -  153

 

 

Pi

21.888014

Theta

21.116557

Tajima's D

-0.47825

CLR

0.340485

CSRT

0.251037448127594

Interpretation

Uncertain