SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO12679
Pre Gene Modal
BGIBMGA001591
Annotation
PREDICTED:_mucin-6-like_isoform_X2_[Papilio_xuthus]
Location
Bomo_Chr21(+):11467213-11475843      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 2.939
 

Sequence

CDS
ATGTCTGGTGGGCTCGTAGATAAAGTTTACATAGGCTTAGATAACGCACCTGCCGCATTTGACATAAAAGGAAGGATATTAGGTCCCAACGGGACTAATTTAGAGTACATAAGATCAGAAACTGGAGTAGTTGCGGTATTGAAAGGTGATAAACTTGAACCTTTACATTTGGCGCTACACCACACTAGATCAGATGCATTAGCTGCAGCGAGGTCATTGGCGCAAAATCTTATTGAGACGATACGAGCGGAACTGGCACAATGGAGCGCTGCGCAAGCTGGAGGGCCTCCGCAGGCCATGAATGTTCCACCACCGACATTAACAACAACATCGGCTCCTCAACCTGTACCACCACCAACTCCCACAGCCGCATTGGCCACTCCGCCTACTCTCACGTCTACGGTGCCTGCTGTGATTCCTCCAGTAGTCAGTGTAGCTCCTGCACCTACTCCTCTGATGACAGTTCGACAACCTACTGTTCTACAACTTTTACCCCAGCAGCAATATGTGTATAACCAAGAAAACGGGCAGCTAATACCCATTGTACAGCCAGGTGTACAGGTTTCAAATACTAATTTCACATCACTGCCCATAGCTCAACAATTAGGACTACAGCAACCAAATTATGGAGCAACACAAATAGTTGATATTTCAAGTATGCAACCTGTTAACGTGACACAATTGAGGTTAAGTGGAGTACCATCATCCATGTCAATGCTACTACCAAATGGATTTACGTTTCCTCAAGCAAGTTTATCGACAGCAGACACAACTGTCAGCTCAGCAACAGCAACTCCCGTGGTATGTGCAGCACAAGGAATAAATTCCTCACAGAAAATCCTATACAGCTCTGATAAAGATAAAGATGTAAAATATCACATACAAGGAACAGATACTGTACAATGGACCGTGCCGGGATCACAAACAATGCTAATACCATACCAACAGTTACAAGATCTCAGTTCTTGTCAACAGGGCTTATCAAATTTACAACCTCAACAGTTTGTCTCTATCGCACCAGCAGGTGGTCTTCAACAAACATTACCATTAACTGCTGCTCAATTACAGCAACTACAAACAGGAACTATAATGCAGCTAAATCAGAAGAATTCTTCAACGCCCACGAAAAACGCGGGAAATCAAGAAAGCCGAGGTCAGAAGCGATTATCTGACGGTACACCTAGTCAACTGCAATTAAGACCTATAGCACCAGCGGGGTCGCATGTAAGCCTGGACAAGAGCACGACCAGAGAGACGCGCTCGTGGACGGCGGCCGCAGGTAGAGAAAACACGGTGGTCAGCATGGGAATGAAAATCAACCCTACACACGGCACCATCATACACGTGTCTTCAGGACAGCAGACTAACGTATCAGCAACGGGAACTCAAGACGGCACCGGAATGTATATACGTCAAATCGACAAAAACTCCATACAGATTCAATCAAGCAAAGATAATCAGAAACAAGATCTAACCAAAGTACAAAGTACAGCTCAGAACGTGCAAATGATTACAGTGCCACAGGGCATGACCGTTTTGCAAAACCCGCTGAACATAAGTCAAATGCCAACTATGCTTGGACAGCCAAACAATCAAGTTTACATGATTCCCGCTAACCAGTCGAATCTAGTCCAAGGAGCATTACAGCCTGGCTTACTTGGACAACAGGTCTTGCAGTCCAGTCCGAATGTTACTGTGGTACAGCCAAATCAATTAGGCGTACCCGGAGGCGTACAGTATAATGTTCCAATAATGCCAATGAACATGCCCGCCAATTCACAATACATGCCAACTGGTTTAAGCTTAAATAATCAGCTATCGGCGCATCAGTTGAATGCGGCCTTGAGTGGCCACCAATTAAACCCTAACTTGGCTGTATCAGGAACGATACCTATCGTTCAAGCACCGCCGTCTTCGCCTTTGACGAATCCACAAATAGCGGCCGGTCACGCACCTAGTATTCCGCAAATAATGCCGCAAAACTCCTTCATTAACCCCACTTCGCAATATGGGAGTGTACAACAGCAATATATGATGCAAAATTCAGGAGCTCTCACCGTACCCAACAATAATGTGCAATATACTATTCCAAATACAAGCCCTGCGTCTGCAAATAACGGCAATGGACAAACTGTGGTGGGTGATACTGACAATACAAATGGAAGTGGCAATCAGACGACCTACATCACGTCTTCTTCTCAAGACAATGGATATTCGGTACCTGCTGGTACATTACAAGGATCGCAACAGAATTTCTCCGCCGAAGGCTCGACCGCAACGCAAGGGACGTACACTCCTGTCACACAAGCTAGTACACCGGGCTATGGTTCTACGAACGGGAATCAGGCTGGCTATATCAGTCAGACGTCAACGACGCAACCCCCAAACTATCAAACGAACGGCTCGAATCCTCCAACGCCCAATCAAAACTACACCGGCGCAACGTCGAGTCCTCAAACATCGCAATCTAACTTTTCTCCGTCAACAACGCCCGCACCCAATCAATCGTATCCAGGGCAGAATTTACAGAGCATGCAGAACGTCGGTTTTGCGCCAAATCAAAATCCTCAGAATCCTTACCCGAATGCGACGGGACAAAATTTGGCAGCTTATGCGAGTAACCAATACCAGTACACGAGCAGGCCTTGGTTCAGGCCCCGGTATGGTTCCCCCCAGGGCTCCCCGTACAGCTCGGGAGCGGGCCCCCCGCCGAACGGAGCCCCGATGCCAGTGCCACCGCCCTCCACCAACTATAACTACTGGCCGGATAGTTGA
Protein
MSGGLVDKVYIGLDNAPAAFDIKGRILGPNGTNLEYIRSETGVVAVLKGDKLEPLHLALHHTRSDALAAARSLAQNLIETIRAELAQWSAAQAGGPPQAMNVPPPTLTTTSAPQPVPPPTPTAALATPPTLTSTVPAVIPPVVSVAPAPTPLMTVRQPTVLQLLPQQQYVYNQENGQLIPIVQPGVQVSNTNFTSLPIAQQLGLQQPNYGATQIVDISSMQPVNVTQLRLSGVPSSMSMLLPNGFTFPQASLSTADTTVSSATATPVVCAAQGINSSQKILYSSDKDKDVKYHIQGTDTVQWTVPGSQTMLIPYQQLQDLSSCQQGLSNLQPQQFVSIAPAGGLQQTLPLTAAQLQQLQTGTIMQLNQKNSSTPTKNAGNQESRGQKRLSDGTPSQLQLRPIAPAGSHVSLDKSTTRETRSWTAAAGRENTVVSMGMKINPTHGTIIHVSSGQQTNVSATGTQDGTGMYIRQIDKNSIQIQSSKDNQKQDLTKVQSTAQNVQMITVPQGMTVLQNPLNISQMPTMLGQPNNQVYMIPANQSNLVQGALQPGLLGQQVLQSSPNVTVVQPNQLGVPGGVQYNVPIMPMNMPANSQYMPTGLSLNNQLSAHQLNAALSGHQLNPNLAVSGTIPIVQAPPSSPLTNPQIAAGHAPSIPQIMPQNSFINPTSQYGSVQQQYMMQNSGALTVPNNNVQYTIPNTSPASANNGNGQTVVGDTDNTNGSGNQTTYITSSSQDNGYSVPAGTLQGSQQNFSAEGSTATQGTYTPVTQASTPGYGSTNGNQAGYISQTSTTQPPNYQTNGSNPPTPNQNYTGATSSPQTSQSNFSPSTTPAPNQSYPGQNLQSMQNVGFAPNQNPQNPYPNATGQNLAAYASNQYQYTSRPWFRPRYGSPQGSPYSSGAGPPPNGAPMPVPPPSTNYNYWPDS

Summary

Uniprot
H9IWF9   A0A437BUV4   A0A212F7A0   A0A1E1VXX1   A0A2A4JNR8   A0A2H1VDS2   + More
A0A194QCF8   A0A194REV0  
Pubmed
19121390    22118469    26354079   
EMBL
BABH01006541    RSAL01000006    RVE54248.1    AGBW02009897    OWR49611.1    GDQN01011461    + More
JAT79593.1    NWSH01000885    PCG73705.1    ODYU01002009    SOQ38979.1    KQ459193    KPJ03104.1    KQ460325    KPJ15820.1   
Proteomes
UP000005204    UP000283053    UP000007151    UP000218220    UP000053268    UP000053240    + More
PRIDE
H9IWF9   
Interpro
IPR036612   KH_dom_type_1_sf        + More
IPR031121   RIK/BLOM7       
SUPFAM
SSF54791   SSF54791       
Gene 3D
3.30.1370.10    
ProteinModelPortal
H9IWF9   A0A437BUV4   A0A212F7A0   A0A1E1VXX1   A0A2A4JNR8   A0A2H1VDS2   + More
A0A194QCF8   A0A194REV0  
PDB
2YQR     E-value=0.00011691,     Score=112

Ontologies

KEGG
101745727    no KO assigned | (RefSeq) flocculation protein FLO11-like
GO
GO:0003723   GO:0005634   GO:0008270   GO:0006355   GO:0042132   GO:0042578   GO:0044249   GO:0006428   GO:0000049   GO:0006508   GO:0016286  
PANTHER
PTHR15744  

Topology

Length:
924
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00246
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00013
outside
1  -  924
 
 

Population Genetic Test Statistics

Pi
30.254445
Theta
24.651403
Tajima's D
0.825557
CLR
0.573556
CSRT
0.616819159042048
Interpretation
Uncertain
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