Silkworm Genome Informatics Database

Gene

KWMTBOMO12658

Pre Gene Modal

BGIBMGA001407

Annotation

PREDICTED:_uncharacterized_protein_LOC106129086_[Amyelois_transitella]

Location

Bomo_Chr21(-):10937491-10940799 View in EpiBrowser

Full name

T-complex protein 1 subunit gamma

Location in the cell

Nuclear Reliability : 3.062

CDS

ATGTTGCAATACCCCATCGACTTAACTTACGTCGCTAAGATGAAGAACATCAAGACAATAATCTTTTGGTGCGCTGTTTTGATGACAGGTGTGTCTTCATTGGAACTGCCGCATGACTTTAATAAGAAAACAGAGGATAATGCTGATTCGGAAACGGCTAGAGATCGTCGCGGTGTCATTGAAGAAGAGAAGTTTTACAACATACAAGCAGATCGACAGCAGAATGTAAACCAACCTACACCCTGGCTGCCGGGCCCTTTGCTGCCCGAAGAAGATCCAACAACAAAAATATCCTTAACCAATGAAGTTAAAGATGTGTTCCCGTCATACCAGACTACTGAGAAAGCTACTGATAGACCAACTGGCCGAGGAGCCAGAGCTTCTAACGAGAACTGGGTTAAACTACCGTATCCTAACCGTGAAGATTCACACAGAGACGATATCCTTACACCGCCACAGCCGTCAGGAGAACTTATCAACTCTAGAATGCCTAGAGTTAATTTCGTTACTCAAAACAGGGGCATAGAAGCATCGGAGTCGCGTCACGATAAGGAGATAATACAACGTGCAACAAGAAAAGATGATCTTAGAACTGAATTCGTGAGGCCTGACGAGCAGGATAGAAATTTCAAACCGGTGTATCCCAGACAAGCTGTTTACTATCCTGAAGAATCGAGACGGCCATACTACGAGGACCGTTACAATGATGATTTGTACAGGCGCGATCCATACTATGATACGTATGAGCGACGGCGTTACCCTGGATATGGACCCAGGATAGACAGATACGATGAGGTTTACGACAACTACGTGCCAAGGAAGCCGAAAAGGATCATCTATTACGCTCATCTCCCTGAAGTAGTTCGAACACCACCGAACGTTGATTTAAGGTACAGATACTCAGTAGATCCATATAGACGTTATGATGATGACGTCTATGCGAGAAACGGAAGGTATGACTACAGATTTAGAAACAGATACCCGTACGCACCTTTAAGGAAAGACGAAAGGAATTTCAGGGATTTAGCTCCCGCTGGAACCGATCATAGGGAAAAGAAAGTCGACGAAAAAGTAACGCCTGCTGCCGTGCTTCCTCAAAAAGAAGACAAACCGAAGAGTAACCAGGACAACCGGAATGTTAACAGGAACGTGATCAACAGTCACCAGTACCACGACAGTGCAGACTCGTACAGTAAGCCCACTCACAAGACCTTCCAAGATGTCGTCAGACCTGCTGAAGGGTATTTCAGATTTGAGGAGCCGCTATTCCAAAGCTCAGTGGATGATCCGTATCAAAGAAAGTATTAA

Protein

MLQYPIDLTYVAKMKNIKTIIFWCAVLMTGVSSLELPHDFNKKTEDNADSETARDRRGVIEEEKFYNIQADRQQNVNQPTPWLPGPLLPEEDPTTKISLTNEVKDVFPSYQTTEKATDRPTGRGARASNENWVKLPYPNREDSHRDDILTPPQPSGELINSRMPRVNFVTQNRGIEASESRHDKEIIQRATRKDDLRTEFVRPDEQDRNFKPVYPRQAVYYPEESRRPYYEDRYNDDLYRRDPYYDTYERRRYPGYGPRIDRYDEVYDNYVPRKPKRIIYYAHLPEVVRTPPNVDLRYRYSVDPYRRYDDDVYARNGRYDYRFRNRYPYAPLRKDERNFRDLAPAGTDHREKKVDEKVTPAAVLPQKEDKPKSNQDNRNVNRNVINSHQYHDSADSYSKPTHKTFQDVVRPAEGYFRFEEPLFQSSVDDPYQRKY

Similarity

Belongs to the TCP-1 chaperonin family.

Uniprot

H9IVX6 A0A3S2M911 A0A2A4K686 A0A2H1VUT5 A0A0L7L5E9 A0A194RE98 + More
A0A212F3Q9 A0A194QC65

Pubmed

19121390 26227816 26354079 22118469

EMBL

BABH01006486 RSAL01000006 RVE54269.1 NWSH01000099 PCG79579.1 ODYU01004392 + More
SOQ44222.1 JTDY01002900 KOB70519.1 KQ460325 KPJ15794.1 AGBW02010504 OWR48378.1 KQ459193 KPJ03128.1

Proteomes

UP000005204 UP000283053 UP000218220 UP000037510 UP000053240 UP000007151 + More
UP000053268

PRIDE

H9IVX6

Pfam

PF00118 Cpn60_TCP1

Interpro

IPR002423   Cpn60/TCP-1        + More
IPR027410   TCP-1-like_intermed_sf
IPR017998   Chaperone_TCP-1
IPR002194   Chaperonin_TCP-1_CS
IPR027409   GroEL-like_apical_dom_sf
IPR012719   Chap_CCT_gamma
IPR027413   GROEL-like_equatorial_sf

SUPFAM

SSF54849   SSF54849        + More
SSF48592   SSF48592
SSF52029   SSF52029

Gene 3D

1.10.560.10 3.30.260.10 3.50.7.10

CDD

cd03337 TCP1_gamma

ProteinModelPortal

H9IVX6 A0A3S2M911 A0A2A4K686 A0A2H1VUT5 A0A0L7L5E9 A0A194RE98 + More
A0A212F3Q9 A0A194QC65

KEGG

101744418 no KO assigned | (RefSeq) uncharacterized LOC101744418

GO

GO:0051082 GO:0005524 GO:0006457 GO:0005737

Subcellular location

Cytoplasm

Length:

435

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

6.4466

Exp number, first 60 AAs:

6.4466

Total prob of N-in:

0.35409

outside

1 - 435

Pi

23.736247

Theta

19.357521

Tajima's D

0.485459

CLR

0.16824

CSRT

0.522773861306935

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics