Silkworm Genome Informatics Database

Gene

KWMTBOMO12648

Annotation

Retrotransposable_element_Tf2_155_kDa_protein_type_1_[Papilio_machaon]

Location

Bomo_Chr21(+):10211828-10215763 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.196

CDS

ATGCTGATGAAGCTTACAGTAGAATCAGAATGGAGCAAATGGGAGAAAAATTTTTGTGAGACATTTGCAAACAAAGGATGGTCCTCCACTAGATATGCTCTTGCCTTTAAATATCAATCGGGATCCTTACTTGAGTATGCTTTAAAGAAGGAGAAATTATTGTTGGAAGTCAGGAAGACAGTGGATACCGGAACAATTATTGATCTCATAGCATTTGGTTTACCCAATTATGTGGCGGACAAGATTGACAGAGAAACATTACAAAGAACGGAAGACCTTTACAATGAGATAGGAAAATTGGAACATCTGGTTTCTGGAATCTATGACTCTGGATCTAATGTTTCTTTAATTAATGCAAGATTATTGAAAATACAAGAGAAACAGAAGACAAATGATATGCAAGTTGTAAACTTAAAAACTATTAATGGTGAGAAAAAAACGAAAGGTATGGTGACGCTAAAAATAAAAATCTACAATATTGAAAGAAATATGGATATTTTTGTGGTGGATAATGAAAATTTTAACTATGACTTCTTAATTGGTTTGGATTGTATAAAAAAATTCAAATTAATACAAAATGAAGAACTTAACATCATACAATATCCCGAAAAGAAAAGCATAATCTCAAATGAACATTGTTCTAATGAGAATAATGTAACAAATGTCGGAATTCCTGATGTACTAGGTGACAAAAATAAAGAACAAACATTTAAAGAGAGAATAGAAGAGAAAGAGAAGATAGAGATGGAACTATACTCTGAGATAGTAAAAAAGGGTACTACTATAAATACCAACAAATTGTGTGAAATTAATTTCAATGAACATGTAAACATTGATGAATTTCAAATGTCTGTAAATCATCTAGATTTATATCAGCAATCAAAAATTGAGAAGTTAGTAGATAAATACAAATCTGTTTTTGCTAAGGACAAATATGATGTTGGCTCTGTGCAGGATTATGAAGCCCATATAGACTTGATGGTAGATAAATACTGCTATAAGCGTCCGTACAGATGCACAATTGAAGACAGAACAGAAATTGAAAGTCAAATATCGAAGCTACTACAGAAAAATTTGATAGAGGAATCTTACAGCCCGTTTGCTGCTCCTGTAACTCTAGCATATAAGAAAGAAGATGATAAAAAAACAAGATTATGCATAGATTTCAGAGATTTAAACAAAATAGTAGTTCCACAATCACAACCTTTCCCACTTATAGAGGACTTAATGACCAAAACAGTAAACTGTAAGTATTATTCTACATTAGATATAAACTCAGCATTTTGGTCGATCCCATTGAAAATTCAAGATAGACATAAGACTGCTTTTGTGACACAAGAAGGACATTTTCAATGGACTTGTCTCCCATTTGGGTTAAAGACTGCACCAGCGATTTTCCAAAGAATATTGAGCAATATTATAAGAAAACACAGACTATCTAACTTTGCAGTAAACTTTATTGACGACATCTTAATTTTTTCTAAAACTTTTGAGGAACATATACAACACATATCGAGACTACTGGAAGCAATACAAAAGGAAGGGTTTAGACTGAAATTTTCAAAATGTACATTTGCAAGTCACCATGCTAAATACTTGGGTCATATAATAGAAGACAATTCAGTTAGACCTCTGAAAGATTATTTAACTGCTGTCAAAAGCTTCCCAATTCCAGAAACAAGGAAAAATATACGGCAGTTTTTGGGAAAAGTAAATTTTCATCATAAGTTTGTACCACATAGTGCAATTATCCTCGATCCATTACATAACTTATTAAGGAAAGATGCGAAATTTGTATGGACGGCAGAATGCCAGGAAGCATTTGATAAAATTAGAGCATTGCTTTGCTCAGAACCAATCCTAAAAATATTTGACCCAGATTCACCGATAAGAATTTACACAGATGCTAGTATCAAAGGAGTTGGAGCAGTGTTGAAACAAGACGATGAAAACGGCGTGAGTAAACCGGTTGCTTATTTTTCGAAGAAATTAACAGAAGCACAGAAAAAGAAGAAGGCAATATACTTAGAATGTCTGGCGATAAAAGAAGCAGTCAAATACTGGCAACATTGGCTTATGGGAAAAGAATTTATGGTATACACAGATCATAAACCCCTGGAAAATATGAACATTAAAGCTCGAACTGATGAGGAACTAGGTGATTTAACATATTATCTATCACAATATAATTTTGAAATTAAATACAACCCAGGAAAATCAAATCAAAAAGCGGACTGCTTAAGCCGAAATCCAGTCCTAGAAGCAAATGATAAAAACGACGATTTTTTAAAGGTCGTAAATTTAATCGACCTACAAGAAATAAAGAATGACCAGCTAACAAATCCAGACCTACAAAAAGAAAAGAATAAGCATATATTAGAGAATGAAGTTTATTACAAGAAAAATAAAAGAAGAAATAAGATTATACTGTCAGAAAAACTTAGCAAAGCTCTAATAAAAAAAGTCCATGACACATACTGCCATATTGGAAGAACCCAGATCACAAATAAAATAACACCATTTTCAGCCAAGAATATTACAGCAAACATTAATAAAATGTGTGATGCGTGTGAAATCTGCATTAAAAACAAGTCCAGGAGGAAGTCGAAATATGGTTTAATGTCACATTTGGGACCAGCCACACACCCGTTTGAAATTGTATCCATCGATACTATTGGGGGCTTTGGAGGATCCCGATCAACCAAAAGAGAAGGGTGTAAATTGGAAGAAGGAGATAGTGTTTATATGGAGAATGGAAATAAACTAAACAGGAAGAAAATGGATGAATTGAGAACAGGGCCATACAAAATACTAAAGAAGATTTCAGAATCGATCTATGAAGTTGACACCGGACACAAAAAAGCAGAATCAAACCTCTACCATATAACAAAGTTGTCTCCAGTGTCTATCTGA

Protein

MLMKLTVESEWSKWEKNFCETFANKGWSSTRYALAFKYQSGSLLEYALKKEKLLLEVRKTVDTGTIIDLIAFGLPNYVADKIDRETLQRTEDLYNEIGKLEHLVSGIYDSGSNVSLINARLLKIQEKQKTNDMQVVNLKTINGEKKTKGMVTLKIKIYNIERNMDIFVVDNENFNYDFLIGLDCIKKFKLIQNEELNIIQYPEKKSIISNEHCSNENNVTNVGIPDVLGDKNKEQTFKERIEEKEKIEMELYSEIVKKGTTINTNKLCEINFNEHVNIDEFQMSVNHLDLYQQSKIEKLVDKYKSVFAKDKYDVGSVQDYEAHIDLMVDKYCYKRPYRCTIEDRTEIESQISKLLQKNLIEESYSPFAAPVTLAYKKEDDKKTRLCIDFRDLNKIVVPQSQPFPLIEDLMTKTVNCKYYSTLDINSAFWSIPLKIQDRHKTAFVTQEGHFQWTCLPFGLKTAPAIFQRILSNIIRKHRLSNFAVNFIDDILIFSKTFEEHIQHISRLLEAIQKEGFRLKFSKCTFASHHAKYLGHIIEDNSVRPLKDYLTAVKSFPIPETRKNIRQFLGKVNFHHKFVPHSAIILDPLHNLLRKDAKFVWTAECQEAFDKIRALLCSEPILKIFDPDSPIRIYTDASIKGVGAVLKQDDENGVSKPVAYFSKKLTEAQKKKKAIYLECLAIKEAVKYWQHWLMGKEFMVYTDHKPLENMNIKARTDEELGDLTYYLSQYNFEIKYNPGKSNQKADCLSRNPVLEANDKNDDFLKVVNLIDLQEIKNDQLTNPDLQKEKNKHILENEVYYKKNKRRNKIILSEKLSKALIKKVHDTYCHIGRTQITNKITPFSAKNITANINKMCDACEICIKNKSRRKSKYGLMSHLGPATHPFEIVSIDTIGGFGGSRSTKREGCKLEEGDSVYMENGNKLNRKKMDELRTGPYKILKKISESIYEVDTGHKKAESNLYHITKLSPVSI

Uniprot

A0A2S2NJQ2 A0A0K8TMU5 A0A2S2PQS7 A0A2R7W771 A0A2R7WSP7 A0A3S3P5T4 + More
L7MA76 A0A443QKN0 L7LVQ9

Pubmed

26369729 25576852

EMBL

GGMR01004768 MBY17387.1 GDAI01002358 JAI15245.1 GGMR01019146 MBY31765.1 + More
KK854406 PTY15552.1 KK855443 PTY22588.1 NCKU01008895 RWS01610.1 GACK01004074 JAA60960.1 NCKU01006363 RWS03567.1 GACK01009357 JAA55677.1

Proteomes

UP000285301

Pfam

PF17921   Integrase_H2C2        + More
PF17919   RT_RNaseH_2
PF00078   RVT_1
PF00665   rve
PF17917   RT_RNaseH
PF00098   zf-CCHC

Interpro

IPR000477   RT_dom        + More
IPR041588   Integrase_H2C2
IPR036397   RNaseH_sf
IPR001584   Integrase_cat-core
IPR041577   RT_RNaseH_2
IPR012337   RNaseH-like_sf
IPR041373   RT_RNaseH
IPR021109   Peptidase_aspartic_dom_sf
IPR001969   Aspartic_peptidase_AS
IPR001878   Znf_CCHC
IPR036875   Znf_CCHC_sf

SUPFAM

SSF53098   SSF53098        + More
SSF50630   SSF50630
SSF57756   SSF57756

Gene 3D

3.30.420.10 2.40.70.10

ProteinModelPortal

A0A2S2NJQ2 A0A0K8TMU5 A0A2S2PQS7 A0A2R7W771 A0A2R7WSP7 A0A3S3P5T4 + More
L7MA76 A0A443QKN0 L7LVQ9

PDB

4OL8 E-value=4.84043e-71, Score=684

KEGG

101736213 no KO assigned | (RefSeq) sphingomyelin phosphodiesterase 4-like

GO

GO:0003676 GO:0015074 GO:0004190 GO:0016021

Length:

970

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00759

Exp number, first 60 AAs:

0.00038

Total prob of N-in:

0.00011

outside

1 - 970

Pi

312.36379

Theta

198.00363

Tajima's D

1.998928

CLR

21.143132

CSRT

0.88085595720214

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree