Gene

KWMTBOMO12637

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr21(-):9973130-9973797      View in EpiBrowser

Full name

Probable RNA-directed DNA polymerase from transposon X-element      

Alternative Name

Reverse transcriptase

Location in the cell

Mitochondrial   Reliability : 2.02 Nuclear   Reliability : 1.949

CDS

ATGTCTCTTCGGAACAAGGTGACACTTTACAAAACTTGCATAAGGCCCGTCATGACTTACGCGAGTGTGGTGCTCGCTCACGCGGCCCGCACGCACATAGACACCCTCCAATCTCTACAATCCCGCTTTTACAGGTTAGCCGGCGGAGCTCCGTGGTTCGTGAGGAACGTTGACCTACACGACGACCTGGGCCTCGAATCTATCCAGAAATACATGAAGTCCGCGTCGGAACGGTACTTCGATAAGGCTATGCGTCATGATAATCGCCTTATCGTTGCCGCCGCTGACTACTCCCCGAATCCTGATCACGCAGGAGCCAGTCACCGTCGATGCCCTAGACACGTCCTTACGGATCCATCAGATCCAATAACATTTGCATTAGACGCCTTCAGCTCTAACACTAGGAGCAGGCTTAGGGACCCCGGTAACCGTACTCGTCGAGCTCGACAAAATTTCATGGCTTTTAAAATCACATTGGTGCTATAG

Protein

MSLRNKVTLYKTCIRPVMTYASVVLAHAARTHIDTLQSLQSRFYRLAGGAPWFVRNVDLHDDLGLESIQKYMKSASERYFDKAMRHDNRLIVAAADYSPNPDHAGASHRRCPRHVLTDPSDPITFALDAFSSNTRSRLRDPGNRTRRARQNFMAFKITLVL

Catalytic Activity

a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1)

Cofactor

Mg(2+)
Mn(2+)

Miscellaneous

At least 30 copies of X-element are present in the genome and some elements are polymorphic between different strains.

Keywords

Nucleotidyltransferase   RNA-directed DNA polymerase   Transferase   Transposable element  

Feature

chain  Probable RNA-directed DNA polymerase from transposon X-element

Uniprot

K9N5J5   Q93137   Q9XXW0   Q9BPQ0   O96544   O96546   + More
A0A194Q1H8   A0A0N0PA09   A0A0N1PFV1   Q4W4D1   V5I850   A0A139W9I1   V5GNJ2   A0A1Y1NA23   V5GNF3   N6U832   A0A139WA11   U4UPN3   U4UPV3   U4TWP1   U4U2B8   N6UKN2   N6T207   U4UBL3   N6THY2   A0A2S2PUU9   U4U8W9   N6TWS8   U4UQE1   U4UPG5   X1X5Q5   D6WI77   X1WL30   Q9NBX4   A0A2S2PJ38   A0A2S2Q383   X1WV94   X1X2Z6  

EC Number

2.7.7.49

Pubmed

23652563    10333566    10380107    26354079    18362917    19820115    + More
28004739    23537049    11405632   

EMBL

KC165845    AFY12622.1    U07847    AAA17752.1    AB018558    BAA76304.1    + More
AB055391    BAB21761.1    AF081101    AAC72919.1    AF081103    AAC72921.1    KQ459580    KPI99178.1    KQ459259    KPJ02068.1    KQ459265    KPJ02064.1    AF530471    AAQ09230.1    GALX01005300    JAB63166.1    KQ972260    KYB24567.1    GALX01005299    JAB63167.1    GEZM01008457    JAV94772.1    GALX01005359    JAB63107.1    APGK01045324    KB741033    ENN74747.1    KQ971729    KYB24751.1    KI209428    ERL96034.1    KB632390    ERL94528.1    KB631769    ERL86004.1    KB631186    ERL84155.1    APGK01020047    KB740155    ENN81216.1    APGK01055369    APGK01055370    KB741264    ENN71543.1    KB632006    ERL87986.1    APGK01025990    KB740608    KB631796    ENN80014.1    ERL86200.1    GGMR01020489    MBY33108.1    KB631813    ERL86370.1    APGK01048945    KB741135    ENN73750.1    KB632317    ERL92255.1    KB632307    ERL91910.1    ABLF02041993    KQ971321    EFA00722.1    ABLF02035143    AF237761    AAF81411.1    GGMR01016834    MBY29453.1    GGMS01002992    MBY72195.1    ABLF02063647    ABLF02038769   

Proteomes

UP000053268    UP000007266    UP000019118    UP000030742    UP000007819   

PRIDE

K9N5J5    Q93137    Q9XXW0    Q9BPQ0    Q9NBX4   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF03372   Exo_endo_phos
PF07530   PRE_C2HC

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR006579   Pre_C2HC_dom       

SUPFAM

SSF56219   SSF56219       

Gene 3D

3.60.10.10    

ProteinModelPortal

K9N5J5   Q93137   Q9XXW0   Q9BPQ0   O96544   O96546   + More
A0A194Q1H8   A0A0N0PA09   A0A0N1PFV1   Q4W4D1   V5I850   A0A139W9I1   V5GNJ2   A0A1Y1NA23   V5GNF3   N6U832   A0A139WA11   U4UPN3   U4UPV3   U4TWP1   U4U2B8   N6UKN2   N6T207   U4UBL3   N6THY2   A0A2S2PUU9   U4U8W9   N6TWS8   U4UQE1   U4UPG5   X1X5Q5   D6WI77   X1WL30   Q9NBX4   A0A2S2PJ38   A0A2S2Q383   X1WV94   X1X2Z6  

KEGG

101737297    no KO assigned | (RefSeq) esterase FE4-like

GO

GO:0003964   GO:0004519   GO:0016021   GO:0006313  

Length:

161

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.36439

Exp number, first 60 AAs:

1.36439

Total prob of N-in:

0.27517

outside

1  -  161

 

 

Pi

140.214033

Theta

139.307299

Tajima's D

0.020453

CLR

0

CSRT

0.372381380930953

Interpretation

Uncertain