SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO12628  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA001558
Annotation
PREDICTED:_isoleucine--tRNA_ligase?_cytoplasmic_[Papilio_polytes]
Location in the cell
Cytoplasmic   Reliability : 3.106
 

Sequence

CDS
ATGGCAAATAAAGTAGAAAGAGTGCCGGAAAGTATTAACTTTCCAGCCGAAGAGGACAAAATCTTAGAATTTTGGAAAAAAATCGATGCTTTCCAGACTTGTTTAAAACAATCCAAAAGCAGACCAAAGTACTCATTTTATGATGGACCACCATTTGCAACAGGACTGCCTCATTATGGTCACATACTTGCAGGCACCATAAAGGATGTGGTCACGAGATATGCTCATCAACAGGGCTATCATGTAGAAAGAAGATTTGGTTGGGATTGTCATGGACTTCCTGTAGAATTTGAGATTGACAAAACTTTGGGCATTAAAGGTCCAGAAGATGTACATAAATTGGGTATTGACAAATACAATGCAGAATGCCGAAAAATTGTGATGAAGTATGCTGCTGACTGGGAGAATATTATCACTCGTATGGGTCGATGGATTGACTTTAAAAATGATTATAAAACTTTATACCCATGGTTTATGGAATCCATTTGGTGGGTTTTCAAGGAACTGTACAACAAAGGCTTGGTGTATCAAGGAGTGAAGGTGATGCCTTATTCTACGGCATGTTCAACTCCATTATCTAACTTTGAATCTGGACAGAACTATAAAGAAGTTGTAGATCCAGCTGTTGTTGTTTCTTTTCCTACTGATAAAGGATATTCCTTACTTGCTTGGACTACCACACCTTGGACATTGCCTAGTAATTTAGCTCTTTGTGTAAATCCCAAATTGATATATATCAAGATTCAAGAAAATAAAACTGGTACATGTTATGTCATTCAAGAGTCTAGGTTTCCTGTTATCTTCAAAAACACTACAGACTTCATGATTCTTGAGAAATTTCCTGGTGAAAAACTAAAGGGCATTAAATACACCCCTGTATTTGATTACTTTGTGGGACAGTGTCCTACTGCTTACCAAGTCTTGACTGATGGTTATGTCACTGATGATTCTGGTACAGGGGTTGTACATCAAGCTCCATATTTTGGAGAAGATGATTTCCGGGTATGTCTGGCTGCAGGACTAATCACCAAAGACCAGGAAATTATTTGTCCTGTTGATTCTAGTGGTCGATTTACAGAGCCTGTCAAAGATTTTTTAGGTCAACATGTGAAAGATGCAGATAAAAACATCATTGCCAATTTAAAAGCCCGCAACCGTTTAGTGCAGCTTGGACAAGTAAAGCATAGCTACCCATTTTGCTGGAGATCAGAAACACCTCTGATTTATAAAGCTGTGCCTTCATGGTTTGTTAGGGTGGAGCAAATGAGCCTTGACTTGTTAAAATCAAGCGAAGCAACAAATTGGGTTCCAGAATATGTAAAGGAAAAGCGGTTCGGAAATTGGTTGAAAGAAGCTAGAGATTGGGCTATTAGTCGCAATAGATATTGGGGTACACCAATTCCTTTGTGGATTTCTACTGATAAACAAGAAGTGGTTTGTATTGGAAGTATTGCAGAGTTGCAGGCTTTAACAGGAAAAGAAATTACTGATCTACACAGAGAAAGCATTGATCACTTGGAAATACCTTCAATGAGGCCTGGACAACCTCCCCTGAGGAGAGTATCTGAAGTTTTTGATTGTTGGTTTGAGTCTGGTTCAATGCCTTACGCGCAATGTCATTATCCATTTGAGAATAAAAAGGAATTTGAAGAAATATTCCCTGCTAATTTTATTGCTGAAGGTATAGATCAAACAAGGGGCTGGTTTTATACTTTAATAGTGTTGTCAACAGCTTTATTCAAGAAGCCACCATTCAAAAACTTGATTGCAAATGGTTTGGTTTTAGCATCTGATGGACAAAAAATGTCGAAGCGAAAGAAAAATTATCCTGATCCACTTGAAGTAGTAATAAAATATGGTGCTGATGCGTTACGTTTGTATTTAATCAATTCACCTGTAGTGAAAGCTGAAAATCTTAGATTTAAAGAGGAGGGTGTCAGAGATATAGTAAAAGATGTGTTTTTGCCATGGTATAATGCTTTTAGATTTTTGATGCAAAATGTTGAAAGATTAGTTCAAGAAGATCATGTTGATTACCGATTCAATGAGAAGGCAATTCGCGAAAATGTTATGGATAAATGGATAACCTCATTTACCCAGTCTTTGATACAATTTGTGAAGAAAGAGATGGCTGCTTATAGATTGTACACAGTTGTGCCACGTCTAACCAAGTTTATCGATCATCTCACAAACTGGTATGTGAGAATGAATAGAAAAAGACTAAAGGGCGACAATGGTGTACAAGATTGCCAAGTAGCTCTCGACACATTGTTTGGGGTCTTGTTTGACATGGTCAGAGTTATGGCACCATTTACACCTTTCCTCACTGAATTTATGTATAAAACTTTACGAAAATTACTGCCTGGAGATTCGCTTGATAGTGTACATTTTAACATGATACCTGATCCGAGAATCGAACTAGTCGACACTAATATTGAAAGAGCAGTCCAGAGAATGCAGTCTGTTATAGAATTGGGAAGAGTTCTGAGAGATAGAAAAACGATTCCTATAAAATATCCATTGCCCGAAATGATAGTTATTCACCGAGATACGACTTACTTAGATGATGTGAAATCTTTAGAAAAATATGTTCTTGAAGAGATGAACGTAAAAAAATTGGAATTGACAAGCGACAAAGAAAAACATGGTATTACTCTAAGAGCCGAGCCAGATCACAAGATACTAGGGGCGCGTTTGAAAGGTGACTTCAAAGCTGTCACGCAGGCATTAAAATCACTCGATAATAATCAGTGCGAAAAGATTATAACTAATGGTTTTGTAGAGCTTGTTGGTCAAAAAATTGATGTGTCTGAAATTAGACTTATTTTCCAAGCTACAGGCAGTGACCAGTATGAAGCGCACAGCGACAATGATGTACTTATTTTATTAAATGTAACCCCCGATCAGGACATGCTTGATGAAGGTTTCTCTAGAGAAATTATTAACAGAGTACAGAAACTAAGGAAGAAAGCACATCTTGTACCAACGGACGAGGTAGATGTGTATTTTTCAGTGGCCAAAACGAGTGATATTCTGCGCATTATAAACTTACATCGCGAATTTATAGAAAGTACAGTGCGAGCGCCCCTCATACCCATCGAACAGTTGTCACCAACGAAACCGCTCATTGTCGAAGAGGCCCAAGAATTAAAGGGCTCCCAACTAAAGTTAGTGATAACGTGGAGGAAAGATGTGGAATTACCTTCAAATCAATGGGCGAATATAGTACTACAAGGTTTGACTCCTAGATTTGGCGTCACTAGCAACCAAGCAAGTATTATTTTAAAAGATAACGAGAATAAATTTATATCTTTGAATAAACTCTATGACGAAGTGAACGTTTTGTTCGGTCTTTACGGCTTAAAATATACATTGTGGTGCGATGGTTCTGAGGTAAAAGATACGAACAATTTAAATACGAAAACAATAATTGCTTCAGCCGCAGCGCCCACTCCGCACGATTCAAAAACGGTTCCAGCTTGTAAGTTCGTTAATGTTGCTAATGGTACCAAATCATTTACGTTATTTTTAGAAAATCCACTGGGAAAAGAAACTTTGGATCGTGCAAATGCCGTAAAATTTGTTACTCAATACTTAGAAATTAATCCTGTAGATGTAGAGAAGCAAATTTTCAAATAA
Protein
MANKVERVPESINFPAEEDKILEFWKKIDAFQTCLKQSKSRPKYSFYDGPPFATGLPHYGHILAGTIKDVVTRYAHQQGYHVERRFGWDCHGLPVEFEIDKTLGIKGPEDVHKLGIDKYNAECRKIVMKYAADWENIITRMGRWIDFKNDYKTLYPWFMESIWWVFKELYNKGLVYQGVKVMPYSTACSTPLSNFESGQNYKEVVDPAVVVSFPTDKGYSLLAWTTTPWTLPSNLALCVNPKLIYIKIQENKTGTCYVIQESRFPVIFKNTTDFMILEKFPGEKLKGIKYTPVFDYFVGQCPTAYQVLTDGYVTDDSGTGVVHQAPYFGEDDFRVCLAAGLITKDQEIICPVDSSGRFTEPVKDFLGQHVKDADKNIIANLKARNRLVQLGQVKHSYPFCWRSETPLIYKAVPSWFVRVEQMSLDLLKSSEATNWVPEYVKEKRFGNWLKEARDWAISRNRYWGTPIPLWISTDKQEVVCIGSIAELQALTGKEITDLHRESIDHLEIPSMRPGQPPLRRVSEVFDCWFESGSMPYAQCHYPFENKKEFEEIFPANFIAEGIDQTRGWFYTLIVLSTALFKKPPFKNLIANGLVLASDGQKMSKRKKNYPDPLEVVIKYGADALRLYLINSPVVKAENLRFKEEGVRDIVKDVFLPWYNAFRFLMQNVERLVQEDHVDYRFNEKAIRENVMDKWITSFTQSLIQFVKKEMAAYRLYTVVPRLTKFIDHLTNWYVRMNRKRLKGDNGVQDCQVALDTLFGVLFDMVRVMAPFTPFLTEFMYKTLRKLLPGDSLDSVHFNMIPDPRIELVDTNIERAVQRMQSVIELGRVLRDRKTIPIKYPLPEMIVIHRDTTYLDDVKSLEKYVLEEMNVKKLELTSDKEKHGITLRAEPDHKILGARLKGDFKAVTQALKSLDNNQCEKIITNGFVELVGQKIDVSEIRLIFQATGSDQYEAHSDNDVLILLNVTPDQDMLDEGFSREIINRVQKLRKKAHLVPTDEVDVYFSVAKTSDILRIINLHREFIESTVRAPLIPIEQLSPTKPLIVEEAQELKGSQLKLVITWRKDVELPSNQWANIVLQGLTPRFGVTSNQASIILKDNENKFISLNKLYDEVNVLFGLYGLKYTLWCDGSEVKDTNNLNTKTIIASAAAPTPHDSKTVPACKFVNVANGTKSFTLFLENPLGKETLDRANAVKFVTQYLEINPVDVEKQIFK

Summary

Similarity
Belongs to the class-I aminoacyl-tRNA synthetase family.
EMBL
BABH01006370    ODYU01005827    SOQ47100.1    NWSH01006385    PCG63472.1    KQ460325    + More
KPJ15775.1    RSAL01000006    RVE54288.1    AGBW02012716    OWR44567.1    KQ459564    KPI99707.1    GAIX01003837    JAA88723.1    JTDY01002530    KOB71235.1    PYGN01002057    PSN31656.1    NEVH01012098    PNF30329.1    GEDC01008657    JAS28641.1    GFDL01001244    JAV33801.1    CH477192    EAT48591.1    KQ971307    EFA11240.1    UFQT01000006    SSX17423.1    GGFM01001240    MBW21991.1    GGFM01001220    MBW21971.1    AXCN02000280    GGFM01001243    MBW21994.1    GEZM01055731    JAV72960.1    GGFK01000969    MBW34290.1    GGFJ01000850    MBW49991.1    ATLV01000772    ATLV01000773    KE523906    KFB34758.1    APCN01002016    GGFK01000941    MBW34262.1    ADMH02001754    ETN61170.1    GANO01002198    JAB57673.1    AXCM01010462    AAAB01008987    EAA01000.3    GL732538    EFX82992.1    GDIP01069685    JAM34030.1    GDIP01109825    GDIP01043682    LRGB01002860    JAL93889.1    KZS05870.1    GDIP01235562    JAI87839.1    GDIP01141270    JAL62444.1    GGFJ01001021    MBW50162.1    KQ414596    KOC69966.1    GDIP01097685    JAM06030.1    KZ288292    PBC29146.1    DS232574    EDS43597.1    GDIQ01025951    JAN68786.1    GL449017    EFN83482.1    GEFM01002785    JAP73011.1    GANP01003968    JAB80500.1    CM004473    OCT83213.1    BC127373    AAI27374.1    BC064686    AAH64686.1    GGLE01003301    MBY07427.1    KA647089    AFP61718.1    AFYH01006027    AFYH01006028    AFYH01006029    AFYH01006030    AFYH01006031    AFYH01006032    AFYH01006033    AFYH01006034    AFYH01006035    AFYH01006036    GFPF01009205    MAA20351.1    GCES01013875    JAR72448.1    GFXV01002051    MBW13856.1    GCES01143699    JAQ42623.1    AGTP01019376    AGTP01019377    AERX01033943    GEDV01009854    JAP78703.1    GACK01005345    JAA59689.1    CM004472    OCT85597.1    KU866198    AOW69633.1    APGK01039167    KB740967    KB632399    ENN76881.1    ERL94631.1    JRES01001310    KNC23675.1    GFAC01003750    JAT95438.1    AABR07072539    CH473977    EDL98104.1    GBYB01007019    JAG76786.1    GFFV01000441    JAV39504.1    GGMR01001704    MBY14323.1   
Pfam
PF08264   Anticodon_1        + More
PF00133   tRNA-synt_1
PF00128   Alpha-amylase
Interpro
IPR002300   aa-tRNA-synth_Ia        + More
IPR014729   Rossmann-like_a/b/a_fold       
IPR001412   aa-tRNA-synth_I_CS       
IPR009008   Val/Leu/Ile-tRNA-synth_edit       
IPR002301   Ile-tRNA-ligase       
IPR033709   Anticodon_Ile_ABEc       
IPR013155   M/V/L/I-tRNA-synth_anticd-bd       
IPR023586   Ile-tRNA-ligase_type2       
IPR009080   tRNAsynth_Ia_anticodon-bd       
IPR017853   Glycoside_hydrolase_SF       
IPR006047   Glyco_hydro_13_cat_dom       
SUPFAM
SSF47323   SSF47323        + More
SSF50677   SSF50677       
SSF51445   SSF51445       
Gene 3D
PDB
1JZS     E-value=1.51332e-166,     Score=1509

Ontologies

Topology

Length:
1212
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.02013
Exp number, first 60 AAs:
0.00742
Total prob of N-in:
0.00067
outside
1  -  1212
 
 

Population Genetic Test Statistics

Pi
156.898305
Theta
209.286459
Tajima's D
-0.854197
CLR
20.59755
CSRT
0.167741612919354
Interpretation
Uncertain
Peptides ×
Source Sequence Identity Evalue
25044914 VSETIIIGWVSGK 100.00 9e-15
26822097 DVFIPWYNAFR 95.45 2e-09
26822097 SSEATNWVPEYVK 100.00 0.001
25044914 TIIAHAIAGK 100.00 0.001
28556443 EVVDPAVVVSFPTDK 100.00 0.003
26822097 FIMQNVER 100.00 0.005
25044914 DQEETYDMVSQIR 100.00 0.005
28467696 DQEGQDVIIFIDNIFR 100.00 0.005
26822097 YAADWENIITR 100.00 0.012
28556443 VLMILDSK 100.00 0.012
26822097 FGVTSNQASIIIK 100.00 0.042
25044914 SSDVDIVKPIK 100.00 0.042
28556443 ILEFWK 100.00 0.042
Copyright@ 2018-2023    Any Comments and suggestions mail to:zhuzl@cqu.edu.cn   渝ICP备19006517号

渝公网安备 50010602502065号