Gene

KWMTBOMO12620

Pre Gene Modal

BGIBMGA012449

Annotation

PREDICTED:_groucho_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr21(-):9396431-9461253      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.262

CDS

ATGTACTATGAAATGTCGTATGGACTCAACGTGGAAATGCACAAACAGACAGAGATAGCGAAAAGGTTAAATGCGATAATAGCACAAATATTACCCTTCCTGTCGCAAGAGCATCAGCAGCAAGTGGCCTCTGCAGTCGAGAGGGCGAAACAGGTCACCATGACTGAACTCAATGCTATTATTGGCCAACAAAGGCCAGACTTGCCGCGGCTACTGCAACAGATGCACGCGGCGCATCTTCCTACACACGGCGCGCCTCCTCTACCTCTTCTGGGGCAAGGCGCTCTACCTCCAGCGGGTCTACTCGGCCTCGGAGTACCGCATCATCCACTCTCCGTACTCGCGAAACCACCTGAACTACATCGATCGGACGATAAGGGAAACGGTATCAGTTCGGCGGAGGAGCGACATAGAAATTCCATATCGCCCGGCGAAAGGGAAAAATATAGGACGCGGAGTCCTGCCGAACCTGATCACAAGAAATTAAAAAAAGAAGAGAAAGACATGGGCCACGAACTAGTTGTGGATGACGCGAGCGAAGAACCCACTTCACCACACAATGGCGCTCCTTCACCACGAGAAAACGGACTCGATAAACTCCAACCAAAAAAAGAGCATCCTCCTCACAGCCCTAGGTCAGGGACGTCTAGCAACGCGTCAACACCATCAGCAAAGAAATTAGACGAGAAACCGAGCACGCCTATATCGAAGCCCGTGACGCCGACTTCGGGCGCGAGCGGTGCGGGCTCAGCAGGGGCTCCACTCAAGGCCGCAGTCAAACCTCCAGCACTACAGTACCCATACCTCGGGAACGGGGCCCACGACGCGTACGTCCTGGCGGGGTACTCGGCCAGGGGGGCGCTGCCTTACGAGCCGCTTCGTCCCCCTATTGGCCCTGCTGGTCTCGCGCCGATACCTGGCGGAAAACCAGCATATTCATTCCACGTATCAGCCGAGGGACAGATGCAGCCTGTCCCTTTTCCCCCAGACGCCTTGATGGGTCCTGGTATACCGAGGCATGCGAGACAAGTCTCCGCGCTAGCTCATGGTGAGGTGGTCTGCGCGGTCACTGTTTCATCGCCCACGAAGTACGTCTACACGGGAGGGAAAGGCTGCGTTAAGGTGTGGGACATCAGCCAACCTAGCAAGGCCCCAGTCAGTCAACTGGATTGTTTGCAAAGGGACAACTACATACGGTCAGTCAAACTGCTGCCCGACGGGCGGACACTGATCGTGGGCGGGGAGGCGTCCAACTTGTCTATATGGGACCTCGCCTCGCCGACTCCCAGAATCAAAGCTGAGCTCACGTCCTCGGCGCCCGCTTGCTACGCGCTTGCTATCAGCCCCGACTCTAAGGTTTGCTTTAGTTGTTGTTCTGACGGCAACATAGCAGTGTGGGATCTCCACAATCAGACTTTAGTACGACAGTTCCAAGGACACACGGACGGCGCATCCTGTATAGATATTTCAGCCGACGGCACGAAGCTATGGACCGGCGGCCTTGATAACACAGTCAGATCATGGGATTTGAGAGAAGGAAGACAGATATTGCCCTACAGGCGAATGGTTAGCGGTCGGCATGGAGAACAGCAACGTGGAGGTTCTGCACGCGGTGAAGCCGGACAAGTACCAGTTGCACTTGCACGAGTCGTGCGTCCTGTCGCTCAGGTTCGCGTCCTGCGGGAAGTGGTTCGTCTCCACCGGGAAGGATAA

Protein

MYYEMSYGLNVEMHKQTEIAKRLNAIIAQILPFLSQEHQQQVASAVERAKQVTMTELNAIIGQQRPDLPRLLQQMHAAHLPTHGAPPLPLLGQGALPPAGLLGLGVPHHPLSVLAKPPELHRSDDKGNGISSAEERHRNSISPGEREKYRTRSPAEPDHKKLKKEEKDMGHELVVDDASEEPTSPHNGAPSPRENGLDKLQPKKEHPPHSPRSGTSSNASTPSAKKLDEKPSTPISKPVTPTSGASGAGSAGAPLKAAVKPPALQYPYLGNGAHDAYVLAGYSARGALPYEPLRPPIGPAGLAPIPGGKPAYSFHVSAEGQMQPVPFPPDALMGPGIPRHARQVSALAHGEVVCAVTVSSPTKYVYTGGKGCVKVWDISQPSKAPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWDLREGRQILPYRRMVSGRHGEQQRGGSARGEAGQVPVALARVVRPVAQVRVLREVVRLHREG

Uniprot

B5LBF7   A0A437BVC2   S4PDN0   A0A212FAS5   A0A194Q3V8   A0A0P4VM37   + More
A0A023FB07   E0VMA8   J9JY60   A0A2S2QRH2   A0A2H8TVP2   A0A0K8SNT9   A0A0K8SNJ1   A0A1B6DHC3   A0A1B6KTK3   A0A1B6KKI2   T1IFT0   R4WDS2   A0A1B6I5Z0   A0A1B6JW44   A0A1B6ER46   A0A0A9YUC4   A0A139WMU6   Q17BC6   B0WQA4   A0A084W6R3   U5EZL5   A0A1Q3EWV7   A0A1Q3EWS8   A0A1Q3EWU8   A0A1Q3EWZ7   A0A1I8JSJ7   A0A2M4BFG3   A0A2M4CJD8   Q7PMQ2   A0A182JZ55   A0A182W845   A0A182RWZ8   A0A2M4CJS1   A0A182YE04   A0A1L8DX46   A0A146M8P9   A0A182J938   W5JMS7   A0A131Y0H0   A0A182QLI8   A0A147BST8   B5THN7   N6TWQ7   Q7QAZ1   A0A2M4ASK2   A0A1S4FQJ2   A0A182SL31   A0A131XH38   A0A1E1XCC7   L7M9Z1   V5I1M4   A0A224YQW6   A0A131Z187   A0A224YYB3   A0A1B6FCM0   A0A224X965   A0A1I8JVM2   A0A182VI50   A0A182L6Z0   Q16T04   A0A182XCE1   A0A182H6W8   A0A1S4GL47   A0A182ID49   A0A0P4VN11   A0A182U2I4   A0A023FBU7   A0A1B6LQS6   E0VRJ3   A0A0P5J620   A0A0P5BZ52   A0A0P5Z5G6  

Pubmed

23622113    22118469    26354079    27129103    25474469    20566863    + More
23691247    25401762    18362917    19820115    17510324    24438588    12364791    14747013    17210077    25244985    26823975    20920257    23761445    29652888    23537049    28049606    28503490    25576852    25765539    28797301    26830274    20966253    26483478   

EMBL

EU649702    ACF60606.1    RSAL01000006    RVE54295.1    GAIX01003606    JAA88954.1    + More
AGBW02009427    OWR50845.1    KQ459564    KPI99694.1    GDKW01001008    JAI55587.1    GBBI01000182    JAC18530.1    DS235306    EEB14514.1    ABLF02021880    ABLF02021886    ABLF02052452    GGMS01010927    MBY80130.1    GFXV01006185    MBW17990.1    GBRD01010921    JAG54903.1    GBRD01010922    JAG54902.1    GEDC01012283    JAS25015.1    GEBQ01025229    GEBQ01025131    JAT14748.1    JAT14846.1    GEBQ01028024    JAT11953.1    ACPB03007090    ACPB03007091    ACPB03007092    ACPB03007093    AK417794    BAN21009.1    GECU01025367    JAS82339.1    GECU01004292    JAT03415.1    GECZ01029324    JAS40445.1    GBHO01029781    GBHO01008901    GBHO01008900    GBHO01008898    GBHO01008896    GBHO01008895    JAG13823.1    JAG34703.1    JAG34704.1    JAG34706.1    JAG34708.1    JAG34709.1    KQ971312    KYB29349.1    CH477323    EAT43571.1    DS232037    EDS32767.1    ATLV01020916    ATLV01020917    ATLV01020918    ATLV01020919    ATLV01020920    ATLV01020921    KE525310    KFB45907.1    GANO01000570    JAB59301.1    GFDL01015246    JAV19799.1    GFDL01015295    JAV19750.1    GFDL01015289    JAV19756.1    GFDL01015204    JAV19841.1    GGFJ01002417    MBW51558.1    GGFL01001245    MBW65423.1    AAAB01008972    EAA13394.5    GGFL01001243    MBW65421.1    GFDF01003100    JAV10984.1    GDHC01003217    JAQ15412.1    ADMH02000601    ETN65687.1    GEFM01004425    JAP71371.1    AXCN02002265    GEGO01001583    JAR93821.1    EU939763    ACH73245.1    APGK01049187    APGK01049188    APGK01049189    APGK01049190    APGK01049191    APGK01049192    APGK01049193    KB741143    ENN73720.1    AAAB01008880    EAA08623.4    GGFK01010454    MBW43775.1    GEFH01003096    JAP65485.1    GFAC01002329    JAT96859.1    GACK01005100    JAA59934.1    GANP01003145    JAB81323.1    GFPF01008169    MAA19315.1    GEDV01004037    JAP84520.1    GFPF01008167    MAA19313.1    GECZ01021820    JAS47949.1    GFTR01007529    JAW08897.1    CH477662    EAT37586.1    JXUM01115096    JXUM01115097    KQ565847    KXJ70601.1    APCN01005005    APCN01005006    GDKW01002726    JAI53869.1    GBBI01000299    JAC18413.1    GEBQ01014053    JAT25924.1    DS235478    EEB15999.1    GDIQ01210538    JAK41187.1    GDIP01193276    JAJ30126.1    GDIP01048781    JAM54934.1   

Proteomes

UP000283053    UP000007151    UP000053268    UP000009046    UP000007819    UP000015103    + More
UP000007266    UP000008820    UP000002320    UP000030765    UP000069272    UP000007062    UP000075881    UP000075920    UP000075900    UP000076408    UP000075880    UP000000673    UP000075886    UP000019118    UP000075901    UP000076407    UP000075903    UP000075882    UP000069940    UP000249989    UP000075840    UP000075902   

PRIDE

B5LBF7   

Pfam

PF03920   TLE_N        + More
PF00400   WD40

Interpro

IPR036322   WD40_repeat_dom_sf        + More
IPR019775   WD40_repeat_CS       
IPR005617   Groucho/TLE_N       
IPR001680   WD40_repeat       
IPR017986   WD40_repeat_dom       
IPR009146   Groucho_enhance       
IPR015943   WD40/YVTN_repeat-like_dom_sf       

SUPFAM

SSF50978   SSF50978       

Gene 3D

2.130.10.10    

ProteinModelPortal

B5LBF7   A0A437BVC2   S4PDN0   A0A212FAS5   A0A194Q3V8   A0A0P4VM37   + More
A0A023FB07   E0VMA8   J9JY60   A0A2S2QRH2   A0A2H8TVP2   A0A0K8SNT9   A0A0K8SNJ1   A0A1B6DHC3   A0A1B6KTK3   A0A1B6KKI2   T1IFT0   R4WDS2   A0A1B6I5Z0   A0A1B6JW44   A0A1B6ER46   A0A0A9YUC4   A0A139WMU6   Q17BC6   B0WQA4   A0A084W6R3   U5EZL5   A0A1Q3EWV7   A0A1Q3EWS8   A0A1Q3EWU8   A0A1Q3EWZ7   A0A1I8JSJ7   A0A2M4BFG3   A0A2M4CJD8   Q7PMQ2   A0A182JZ55   A0A182W845   A0A182RWZ8   A0A2M4CJS1   A0A182YE04   A0A1L8DX46   A0A146M8P9   A0A182J938   W5JMS7   A0A131Y0H0   A0A182QLI8   A0A147BST8   B5THN7   N6TWQ7   Q7QAZ1   A0A2M4ASK2   A0A1S4FQJ2   A0A182SL31   A0A131XH38   A0A1E1XCC7   L7M9Z1   V5I1M4   A0A224YQW6   A0A131Z187   A0A224YYB3   A0A1B6FCM0   A0A224X965   A0A1I8JVM2   A0A182VI50   A0A182L6Z0   Q16T04   A0A182XCE1   A0A182H6W8   A0A1S4GL47   A0A182ID49   A0A0P4VN11   A0A182U2I4   A0A023FBU7   A0A1B6LQS6   E0VRJ3   A0A0P5J620   A0A0P5BZ52   A0A0P5Z5G6  

PDB

5MWJ     E-value=3.33281e-110,     Score=1020

KEGG

100188955    K04497 groucho | (RefSeq) Gro; groucho

PATHWAY

04013    MAPK signaling pathway - fly - Bombyx mori (domestic silkworm)
04310    Wnt signaling pathway - Bombyx mori (domestic silkworm)
04330    Notch signaling pathway - Bombyx mori (domestic silkworm)

GO

GO:0006355   GO:0005634   GO:0003714   GO:0090090   GO:0005667   GO:0070491   GO:0005515   GO:0046872   GO:0003774   GO:0005524   GO:0016459   GO:0000166   GO:0004190   GO:0006508   GO:0016286  

PANTHER

PTHR10814  

Length:

570

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00468

Exp number, first 60 AAs:

0.0009

Total prob of N-in:

0.00111

outside

1  -  570

 

 

Pi

187.202703

Theta

167.674011

Tajima's D

-1.786511

CLR

107.916426

CSRT

0.0306484675766212

Interpretation

Uncertain