SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO12618
Annotation
endonuclease_and_reverse_transcriptase-like_protein_[Bombyx_mori]
Location
Bomo_Chr21(+):9379424-9384110      View in EpiBrowser
Location in the cell
Mitochondrial   Reliability : 1.443 Nuclear   Reliability : 1.361
 

Sequence

CDS
ATGCTGGGAGTCCTCAACAGAGCCAAGAGGTACTTCACGCCTGGACAAAGACTTTTGCTCTATAAAGCACAAGTCCGGCCTCGCGTGGAGTACTGCTCCCATCTCTGGGCTGGGGCTCCCAAATACCATCTTCTTCCATTTGACTCCATACAGAAGAGAGTCGTTCGGATTGTCGATAATCCCATTCTCACGGATCGTTTGGGTCTGCGGAGGGACTTCGGTTCCCTCTGTATTTTGTACCGCATGTTCCATGGGGAGTGCTCTGAGGAATTGCTCGAGATGATACCAACGTCTCGTTTTTACCATCGCACCGCCCGCCACTGGAGTAGAGTTCATCCATACTTCGGGGGTTGGTGCTTCCCGCTTCCCAATGTCAGGGGCCTACATAGCAACCTTGACGCCGTACACCACCACCTTGAGACGGCGCAGCCTGCCCTGCTTTTTTTAACGGAGACGCAGATATCTGCTCCGGACGATACCTCATACCTTGAATACCCCGGCTACGTATTGGAGCACAACTTCCTGCGTAAAGCCGGGGTGTGCGTATTCGTCCGGGCTGATGTCTGTTGTCGCCGTCTTCGGGGCCTCGAAAAACGGGACCTGTCCCTCTTGTGGCTGCGCGTAGATCACGGGGGCTGTACCCGAATCTACGCGTGCCTGTACAGGTCCCACAGCAGTGATGCAGGTTCAGCTCTGTTTGAGCATGTGCAAGAGGGGACTAACCGCGTGCTTGAGCAGTACCCATCTGCGGAGGTGGTGGTTCTTGGAGACTTTAACGCTCACCACCAAGAGTGGTTGGGGTCCAGAACCACTGACCTCCCGGGTCGGACTGCCTACGATTTCGCCTTGGCCTACGGCTTCTCCCAGCTGGTGACACAGCCCACCCGTGTCCCAGATATCGAGGGGCACGAACCTTCTTTGTTGGACCTTCTGCTGACCACGGATCCAGCCGGATACAGTGTGGTGGTCGACGCTCCGCTTGGATCGTCTGATCACTGCCTTATCCGTGCTGCCGTACCACTCTCTCGTCCTGGTCGTCGAACGACGACCGGGTATCGAAGAGTTTGGAAGTATATGTCAGCAGATTGGGATGGATTGCGTGAATTTTACGCATCCTACCCATGGGGGCGGTTCTGCTTTTCCTCTGCTGATCCTGACGTCTGTGCGGGCCGTCTTAAAGACGTGGTGCTCCAGGGGATGGAATTGTTTATTCCGTCCTCTGAAGTGCCCGTTGGGGGTCGCAGCAGACCCTGGTATAACAATGCCAGCAGGGATGCTGCACACCTCAAGCGGTCCGCATACGTGGCATGGGATAGTGCCAGGAGACGTCAGGACCCTAACATCTCAGAGGAAAGGCGGAAATATAACGCCGCTTCTAGGTCCTACAAGAAGGTTATTGCCAAGGCGAAGTCGGAGCACGTCGCTAGAGTTGGCGAGCGATTGAAGAGCTATCCCTCCGGGAGCCGTGCTTTTTGGTCGCTCGCCAAGGCTGCAGAAGGAAACTTTTGCAGGTCTAGTCTCCCACCACTGCGCAAGTCCGATGACAATCTGGCCCACAGCGCGAAAGAGAAGGCTGACCTTCTGGTCAAACTCTTCGCCTCGAACTCGACTGTGGACGACGGGGGTGCCACACCACCGAACATCCCTCGGTGTGATAGCTCCCTGCCAGATATCTGCTTCACACAGTGTGCAGTCAGGCGGGAGCTCCGACTCCTGGACGTCCATAAGTCGAGTGGGCCAGACGGCATCCCCGCAGTGGTTTTGAAAACGTGCGCCCCTGAGCTGACACCTGCGCTAACGCGTTTGTATCGCCTCTCTTATTGCACTAACAGGGTTCCGTCTTCATGGAAGACCGCCCACGTCCACCCTATCCCCAAGAAGGGTGACCGGTCGGACCCATCGAGCTACAGGCCTATCGCGATAACTTCCTTGCTTTCCAAGGTGATGGAGCGAATAATTAATACACAACTCCTGAAGTATCTTGAAGATCGCCAGCTGATCAGTGACCGACAGTACGGTTTCCGTCACGGTCGCTCAGCTGGCGATCTTCTTGTATACCTTACTCACAGGTGGGCTGAAGCCTTGGAGAGCAAGGGCGAGGCTCTTGCTGTGAGCCTTGATATCGCGAAGGCCTTCGACAGGGTCTGGCATAGGGCACTTCTATCGAAGTTACCATCTTACGGAATCCCCGAGGGTCTCTGCAAGTGGATCGCTAGCTTTTTGGATGGGCGGAGCGTCACGGTCGTTGTAGACGGTGACTGCTCTGATACCATGACCATTAACGCTGGCGTTCCACAAGGTTCGGTGCTCTCCCCCACGCTTTTCATCCTGTATATCAATGACATGCTGTCTATTGATGGCATACATTGCTATGCGGATGACAGCACGGGGGATGCGCGATATATCGGCCATCAGAGTCTCTCTCGGAGCATGGTGCAAGAGAGACGATCAAAACTTGTGTCTGAAGTGGAGAACTCTCTGGGGCGAGTCTCCGAATGGGGTGAATTGAACTTGGTTCAATTCAACCCGATAAAGACACAAGTTTGCGCGTTCACTGCGAAGAAGGACCCCTTTGTCATGGCGCCGCAATTCCAAGGAGTATCCCTGCAACCTTCCGAGAGTATCGGGATACTTGGGGTCGACATTTCGAGCGATGTCCAGTTTCGGAGTCATTTGGAAGGCAAAGCCAAGTTGGCGTCCAAAATGCTGGGAGTCCTCAACAGAGCGAAGCGGTACTTCACGCCTGGACAAAGACTTTTGCTTTATAAAGCACAAGTCCGGCCTCGCATGGAGTACTGCTCCCATCTCTGGGCCGGGGCTCCCAAATACCAGCTTCTTCCATTTGACTCCATACAGAGGAGGGCCGTTCGGATTGTCGATAATCCCATCCTCTCGGATCGTTTGGAGCCTCTGGGTCTGCGGAGGGACTTCGGTTCCCTCTGA
Protein
MLGVLNRAKRYFTPGQRLLLYKAQVRPRVEYCSHLWAGAPKYHLLPFDSIQKRVVRIVDNPILTDRLGLRRDFGSLCILYRMFHGECSEELLEMIPTSRFYHRTARHWSRVHPYFGGWCFPLPNVRGLHSNLDAVHHHLETAQPALLFLTETQISAPDDTSYLEYPGYVLEHNFLRKAGVCVFVRADVCCRRLRGLEKRDLSLLWLRVDHGGCTRIYACLYRSHSSDAGSALFEHVQEGTNRVLEQYPSAEVVVLGDFNAHHQEWLGSRTTDLPGRTAYDFALAYGFSQLVTQPTRVPDIEGHEPSLLDLLLTTDPAGYSVVVDAPLGSSDHCLIRAAVPLSRPGRRTTTGYRRVWKYMSADWDGLREFYASYPWGRFCFSSADPDVCAGRLKDVVLQGMELFIPSSEVPVGGRSRPWYNNASRDAAHLKRSAYVAWDSARRRQDPNISEERRKYNAASRSYKKVIAKAKSEHVARVGERLKSYPSGSRAFWSLAKAAEGNFCRSSLPPLRKSDDNLAHSAKEKADLLVKLFASNSTVDDGGATPPNIPRCDSSLPDICFTQCAVRRELRLLDVHKSSGPDGIPAVVLKTCAPELTPALTRLYRLSYCTNRVPSSWKTAHVHPIPKKGDRSDPSSYRPIAITSLLSKVMERIINTQLLKYLEDRQLISDRQYGFRHGRSAGDLLVYLTHRWAEALESKGEALAVSLDIAKAFDRVWHRALLSKLPSYGIPEGLCKWIASFLDGRSVTVVVDGDCSDTMTINAGVPQGSVLSPTLFILYINDMLSIDGIHCYADDSTGDARYIGHQSLSRSMVQERRSKLVSEVENSLGRVSEWGELNLVQFNPIKTQVCAFTAKKDPFVMAPQFQGVSLQPSESIGILGVDISSDVQFRSHLEGKAKLASKMLGVLNRAKRYFTPGQRLLLYKAQVRPRMEYCSHLWAGAPKYQLLPFDSIQRRAVRIVDNPILSDRLEPLGLRRDFGSL

Summary

Uniprot
Q6UV17   A0A3S2M451   A0A437B259   A0A3S2NTH0   A0A3S2LQP1   A0A437BQ08   + More
A0A3D5S1K1   T2M4I6   A0A0P4VPK5   A0A0P4VVV8   A0A0P4VX79   A0A2H9T4N9   W4XUR2  
Pubmed
30148503    24065732    29150518   
EMBL
AY359886    AAQ57129.1    RSAL01000041    RVE50934.1    RSAL01000210    RVE44225.1    + More
RSAL01000090    RVE48098.1    RSAL01000422    RVE41792.1    RSAL01000021    RVE52490.1    DPOC01000269    HCX22453.1    HAAD01000593    CDG66825.1    GDRN01111278    JAI56803.1    GDRN01111277    JAI56804.1    GDRN01111326    JAI56798.1    NSIT01000234    PJE78200.1    AAGJ04060226   
Proteomes
UP000283053    UP000007110   
PRIDE
Q6UV17   
Pfam
PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF00002   7tm_2
PF04939   RRS1
PF01585   G-patch
PF14306   PUA_2
PF01747   ATP-sulfurylase
PF02460   Patched
PF00096   zf-C2H2
Interpro
IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR000832   GPCR_2_secretin-like       
IPR017981   GPCR_2-like       
IPR028082   Peripla_BP_I       
IPR007023   Ribosom_reg       
IPR012677   Nucleotide-bd_a/b_plait_sf       
IPR000504   RRM_dom       
IPR034653   SPF45_RRM       
IPR003954   RRM_dom_euk       
IPR000467   G_patch_dom       
IPR040052   RBM17       
IPR035979   RBD_domain_sf       
IPR027417   P-loop_NTPase       
IPR002891   APS_kinase       
IPR002650   Sulphate_adenylyltransferase       
IPR025980   ATP-Sase_PUA-like_dom       
IPR014729   Rossmann-like_a/b/a_fold       
IPR024951   Sulfurylase_cat_dom       
IPR015947   PUA-like_sf       
IPR030223   Dispatched       
IPR003392   Ptc/Disp       
IPR000731   SSD       
IPR013087   Znf_C2H2_type       
IPR036236   Znf_C2H2_sf       
SUPFAM
SSF56219   SSF56219        + More
SSF53822   SSF53822       
SSF54928   SSF54928       
SSF52540   SSF52540       
SSF88697   SSF88697       
SSF57667   SSF57667       
Gene 3D
3.60.10.10     3.30.70.330     3.40.50.620    
CDD
cd12647  RRM_UHM_SPF45
 cd00517  ATPS
 cd02027  APSK
ProteinModelPortal
Q6UV17   A0A3S2M451   A0A437B259   A0A3S2NTH0   A0A3S2LQP1   A0A437BQ08   + More
A0A3D5S1K1   T2M4I6   A0A0P4VPK5   A0A0P4VVV8   A0A0P4VX79   A0A2H9T4N9   W4XUR2  
PDB
6AR3     E-value=1.05746e-05,     Score=121

Ontologies

KEGG
101736731    no KO assigned | (RefSeq) uncharacterized LOC101736731
GO
GO:0003964   GO:0004519   GO:0016021   GO:0003723   GO:0003676  
PANTHER
PTHR17602   PTHR13288   PTHR45951:SF3  

Topology

Length:
980
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00994
Exp number, first 60 AAs:
0.00039
Total prob of N-in:
0.00028
outside
1  -  980
 
 

Population Genetic Test Statistics

Pi
126.00378
Theta
25.874845
Tajima's D
0
CLR
52.328459
CSRT
0.373381330933453
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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